Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15487
Subject:
XR_002957600.1
Aligned Length:
3270
Identities:
161
Gaps:
3084

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGAGCTGAGATTGCACCACTGTACTCCAGCCTGGGCGACAGAGCGAGACTGTCTTAAAAAAAAAAAAGAGAAG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TGGGGGAAGGCCCACCCAGGAGCTGCTCTGCCAGGCCACAGCCATGTCTAGGGTGGGCTGGACATGGCAGCCGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCCCCCTGCACAGGGTGGAATTTCCTTACTTGCCTTTGGTCAGGGGTTTACTCCCAAACGTCCCATCTTTTCTT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CTGCGTCTTTTCTACTTCATCACTTCTCCCTCCCAGGATGATGTCTATAAACTAAGCACTGACAGCTCACAGCA  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTGCTGCCCCAGCTGCAGGGATGGGTCCCAGCCTCTCTTGCCTGCTTCTTGGCTACAGGACGGACTCCACTGGC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CCCCGTGGGATGATCGAATCTTAAAAGGGAAGGCAGTTCTGACACCTGCTCCAGCACGGATGAACCTCGAAAAC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ACAATGCCAATGCAGGAAGCCTGTCACGAGACCACGTGCTGTCCGGCTGCACTTGCATGGAGCTCCCAGGACAG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GAAGAGTCACAGGTAGGGAAAGGGGAGGCAGGCTGCTGGGGGTGGGGGCTGACTGCTCATGGGTAGGGTTTCCT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  TTTGGGGTGAGGGAACTGTTCTGGAATTGGATAGTGGTGACGGGCACAGAACTTTGTGCTTCTATTAAAAGCCA  666

Query    1  -----------------------------------------------------------------ATGCAGTGG  9
                                                                             .||||||||
Sbjct  667  CTGAATTTATTTATTTTATTTTAATTTTTGAGAGACAAGAGACTCACTCTGTCGCCCAGGCTGGAGTGCAGTGG  740

Query   10  CGCCATCTCAGCTCACTGCAACCTCCATCTCCCAGGTTCAAGCGATTCTCGTGCCTCGGCCTCCTGAGTAGCTG  83
            .||.|||||.|||||||||||||||...|||||.||||||||.|||||||.||||||.||||.|||||||||||
Sbjct  741  TGCGATCTCGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGTGATTCTCCTGCCTCAGCCTTCTGAGTAGCTG  814

Query   84  GGATTAC-AGGCGTGTGCCACTACACTCAACTAATTTTTGTATTTTTAGGAGAGACGGGGTTTCACCCTGTTGG  156
            ||||||| |||||||.||.||.||.|.||.|||||||||||||||||||.||||||.||||||||||.||||||
Sbjct  815  GGATTACAAGGCGTGCGCTACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACTGGGTTTCACCATGTTGG  888

Query  157  CCAGGCTGGTCTCGAACTCCTGACCTCAAG--------------------------------------------  186
            .|||||||.|||||||||||||||.|||.|                                            
Sbjct  889  TCAGGCTGCTCTCGAACTCCTGACTTCATGATCCGCCTGCCTCAGCCTCGGCCTCCCAAAGTGCTGGGATTACA  962

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct  963  GGCATGAGGTACTGCGCCTATCAGGCCGAACTGTACACTTTTAGAGGGAATTTTATGGCATGTAAATTACATCT  1036

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1037  CAATTTAAAAAACAGGAAGGCTTAGGGGGACTGATTTGAGTAATAATAAAACTCCAGTTTCCTGCAAAACAAAA  1110

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1111  ACAAAAAGACAAGGCCGGCGAGCTCTCTAAGCACTGACTATGCCAGGAAGGCTGCCCAGCCAGGACCCCGTGGC  1184

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1185  CCACGGGGCGTCGTCCTGTTCCTGCAGTGGCACATGCAGTTGTGGGAGAGCCAGTGCCCCCACGCCGTGTCATG  1258

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1259  CAGCCTGTTTGTGAGTGTCCGCGTAACCTTTAATTCTGAGCTGATTTTGCTTTGACAGAATTTCAAACGTAAAG  1332

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1333  AAGAGTTGCAAAAATGGGTCAGGAACCCCCCGCCCCATTCTGTGTCAGAACTAAGCTTCTGAGAAGCATCTGGC  1406

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1407  CCGCTTGAGGCCAGGAACGTATAAATACTGCCTTGGGAGGCCACATCCCTTTTGTGGCTGGTTCCCTTCCCCAC  1480

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1481  CAGTGTCCCCAGCAGTGACTGTGCCCCTAGTCAGGAGCCACAGGAAGGTCGGGGCCCTGGGCTTCCTCCGTCCT  1554

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1555  GTTGGCTGGAGAGAGGCTGGGCTGGAAGGCTCGGAAGCAGGTGGAACCGGTCAAGCAGCGTGTTTTTGTTGGGG  1628

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1629  TGACGTTATGTAGGGGCTGCACAGTCATGGGGACATCGTGAAGCTGGCAGGAGGGTGGCTGTGGACAGCCCAGC  1702

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1703  GGTGGGCGGGGCCCCAGCAGGCCTGGGAGAGCCTCACGCGGCTTAAGCACGGGAGTCGGAATCACTTCAGAGCC  1776

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1777  CGCCTGCCGCTTTCTTTTCAAAATTCGGGCCTTTAGATTGGATCCAGGAAAGGAAGTCATTTCCCCAGGAAAGC  1850

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1851  ACATCTGACCCCTAACCTTGCATGTGGTCACGGTGGCCGTGGGGCCCCCTCCCTTCCCCTGGCCCGCAAGGCTG  1924

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1925  GACTGTGCTGTCATCCCGCAGCAGTCACTGGGCTGGGCACAGCTGGGGGATTCAGGGAGGGTGTCCTAAGGCTT  1998

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 1999  CTGTGTCCCTGGGTATCGGGGAGTGTGGGCTTCACTGAAAAGGCCAACGGGGTGGAAGCTGAGGGGGAGTCATT  2072

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2073  GCACAAATCAGATTTGCACGAAGCCTGGCACGGAGGACGCTGGAGAATGAGGGCGGCTCCCGTCCCGTTCCTGA  2146

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2147  GCACGCTCGAGTCCCGCCTCCACCTCACAGCAGCTCTTCCGTGCGGTAAGCGGGAGACTCCCATTTTCAAGGCC  2220

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2221  AACTCCTGTCCTCCCGGCTTCTGGCTGTCTCCAGGCTCATCCCCAAGACCAGCCGCAGGGACTCAGGCACCTGA  2294

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2295  CAAGAGGGTGCCCTCCCCTGGGCTGCAGGGACAAAAATGCCTGTGGCGTGAGCAGACCCCAGCTGGGCTCTCAG  2368

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2369  GAGACCCCTCACCCTCCACCCGACACGGAGGCTCAGGAGACCCCTCACCCTCCACCCAGCACTGAAGCTCAGGC  2442

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2443  AGGCACAGCACACCCTGGGTCCTGGGGATGACGCTGACCTGAGGGTGGCAGAGGTGAGGTTCCCAGCCACACCG  2516

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2517  CTGCTGGCAGGTCAGGCCCGTGAGGAGGTGGCTGGCTGGGCCTGTGGGTCCAGGGCCTGGGGTCCGGCCCTGTG  2590

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2591  TGGGAAGTGAGCCTAGCAGATGTGCTCGGAGGTGCCACCGATGAAAAAATACTGCCACTCTGTTCACGTGGAGT  2664

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2665  TTAAGACAACGTGGGAATCGCATGTTGACACCAGGGAATTAGTTTAAAAGTTAAGGAGCTACTGAGAAACATCT  2738

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2739  CTCCTCCTCACAGCTCACAGTTTAAAACTACGTGAACTTTTAACACCTGAGAGACCCAGGCAGGCATGCTCTGA  2812

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2813  ACGCTTTAGTCCAATGCAGGGAACCCTCGTTTCACAGACAGAGCGTACAGGCTCACGGGGCCGCGCCAGGAGCA  2886

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2887  TACCTGGCCTGGCGGCGGGGCACCCGGGGAAAGGCTGTGCTGCCCTCCCTGCGTTGCTGGCTCTGTGGACTCTG  2960

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 2961  GGCTTGGCAGCTGTGCGGAACGTGGGCCGGCATCGCTGTGCTCAGCCAGCGACCCCTGGGGGCCTAGCTCTGCT  3034

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3035  GAGGGCCGGCTGCCTGGTGGTGGGGTTCGTACCCTCCCACCCCTCCTGCTGTCAGCTGAGCCCAGCCTCACTTC  3108

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3109  CCCCTCCCTGTTCTGGAAGGAGCGAGGGCAATCAGGGTGAGAAGGAGGGAGACGCAATGGTAGGAACAGCGCAA  3182

Query  187  --------------------------------------------------------------------------  186
                                                                                      
Sbjct 3183  GAGGCGGCCACTGCCCCACCTCAACGGAAAGCTGTCCCACACAAAGCAGGGGCCGCCCACCTGCCCAGACCCCA  3256

Query  187  --------------  186
                          
Sbjct 3257  CGGAAGGGGTGGCC  3270

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