Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15515
Subject:
XM_017314337.1
Aligned Length:
3119
Identities:
1124
Gaps:
1855

Alignment

Query    1  ATGTTTCATTTAAGGACTTGTGCTGCTAAGTTGAGGCCATTGACGGCTTCCCAGACTGTTAAGACATTTTCACA  74
            ||||||||||||||||||||||||||||||||.|||||||||||.||.||||||||||||||||||||||||||
Sbjct    1  ATGTTTCATTTAAGGACTTGTGCTGCTAAGTTAAGGCCATTGACAGCCTCCCAGACTGTTAAGACATTTTCACA  74

Query   75  AAACAGACCAGCAGCAGCTAGGACATTTCAACAGATTCGGTGCTATTCTGCACCTGTTGCTGCTGAGCCCTTTC  148
            |||||.||||||||||..||||||.||||||||||||||||||||||||||||||||.||||||||.||.||||
Sbjct   75  AAACAAACCAGCAGCAATTAGGACGTTTCAACAGATTCGGTGCTATTCTGCACCTGTAGCTGCTGAACCATTTC  148

Query  149  TCAGTGGGACTAGTTCGAACTATGTGGAGGAGATGTACTGTGCTTGGCTGGAAAACCCCAAAAGTGTACATAAG  222
            |.|||||||||||||||||||||||||||||.|||||||||||.|||.||||.||.||||||||||||||||||
Sbjct  149  TTAGTGGGACTAGTTCGAACTATGTGGAGGAAATGTACTGTGCCTGGTTGGAGAATCCCAAAAGTGTACATAAG  222

Query  223  TCATGGGACATTTTTTTTCGCAACACGAATGCCGGAGCCCCACCGGGCACTGCCTACCAGAGTCCCCTTCCCCT  296
            |||||||||||||||||.||.|||||.|||||.|||||||||||||||||||||||||||||.||||||.||||
Sbjct  223  TCATGGGACATTTTTTTCCGAAACACCAATGCTGGAGCCCCACCGGGCACTGCCTACCAGAGCCCCCTTTCCCT  296

Query  297  GAGCCGAGGCTCCCTGGCTGCTGTGGCCCATGCACAGTCCCTGGTAGAAGCACAGCCCAACGTGGACAAGCTCG  370
            |||.|||.|||||||||||.|..||||||||||||||||||||||.||||||||.||.|||||.|||||.||||
Sbjct  297  GAGTCGAAGCTCCCTGGCTACCATGGCCCATGCACAGTCCCTGGTGGAAGCACAACCTAACGTCGACAAACTCG  370

Query  371  TGGAGGACCACCTGGCAGTGCAGTCGCTCATCAGGGCATATCAGATACGAGGGCACCATGTAGCACAGCTGGAC  444
            |||||||||||.||||.||||||||.||||||||||||||||||.|..|.||.|||||..|.|||.|.||.||.
Sbjct  371  TGGAGGACCACTTGGCGGTGCAGTCTCTCATCAGGGCATATCAGGTCAGGGGTCACCACATTGCAAAACTTGAT  444

Query  445  CCCCTGGGGAT------------TTTGGATGCTGATCTGG--AC----TCCTC---CGTGCCCGCTGACATTAT  497
            ||.||.||.||            |||.||||.||.||.||  ||    ||.||   ||||           .||
Sbjct  445  CCTCTCGGAATTAGTTGTGTAAATTTTGATGATGCTCCGGTAACTGTTTCTTCAAACGTG-----------GAT  507

Query  498  CT--CA---TCCACAGACAAACTT------------------GGGTTCTATGGCCTGGATGAGTCTGACCTCGA  548
            ||  ||   |.||..||...||||                  ||||||||||||||..|.|||||||||||.||
Sbjct  508  CTTGCAGTTTTCAAGGAACGACTTCGAATGCTAACAGTAGGAGGGTTCTATGGCCTACACGAGTCTGACCTTGA  581

Query  549  CAAGGTCTTCCACTTGCCCACCACCACTTTCATCGGGGGACAGGAATCAGCACTTCCTCTGCGGGAGATCATCC  622
            |||||||||||||||.|||||||||||||||||||||||||||||..|||||||||||||.|||||||||||||
Sbjct  582  CAAGGTCTTCCACTTACCCACCACCACTTTCATCGGGGGACAGGAGCCAGCACTTCCTCTTCGGGAGATCATCC  655

Query  623  GTCGGCTGGAGATGGCCTACTGCCAGCATATTGGGGTGGAGTTCATGTTCATCAATGACCTGGAGCAGTGCCAG  696
            ||||||||||||||||||||||||||||.|||||.|||||||||||||||||.|||||..||||.||.||||||
Sbjct  656  GTCGGCTGGAGATGGCCTACTGCCAGCACATTGGTGTGGAGTTCATGTTCATTAATGATTTGGAACAATGCCAG  729

Query  697  TGGATCCGGCAGAAGTTTGAGACCCCTGGGATCATGCAGTTCACAAATGAGGAGAAACGGACCCTGCTGGCCAG  770
            ||||||||.||||||||||||||||||||.||||||||||||||.|||||||||||.||||||.||||||||||
Sbjct  730  TGGATCCGACAGAAGTTTGAGACCCCTGGAATCATGCAGTTCACCAATGAGGAGAAGCGGACCTTGCTGGCCAG  803

Query  771  GCTTGTGCGGTCCACCAGGTTTGAGGAGTTCCTACAGCGGAAGTGGTCCTCTGAGAAGCGCTTTGGTCTAGAAG  844
            ||||||.||.|||||||||||||||||||||||||||||.|||||||||||.||||||||.||||||||.||||
Sbjct  804  GCTTGTACGATCCACCAGGTTTGAGGAGTTCCTACAGCGAAAGTGGTCCTCGGAGAAGCGTTTTGGTCTGGAAG  877

Query  845  GCTGCGAGGTACTGATCCCTGCCCTCAAGACCATCATTGACAAGTCTAGTGAGAATGGCGTGGACTACGTGATC  918
            ||||.|||||.||||||||||||||||||||.||||||||.|.|||.||||..|||||.||||||||.||||||
Sbjct  878  GCTGTGAGGTGCTGATCCCTGCCCTCAAGACAATCATTGATATGTCAAGTGCAAATGGAGTGGACTATGTGATC  951

Query  919  ATGGGCATGCCACACAGAGGGCGGCTGAACGTGCTTGCAAATGTCATCAGGAAGGAGCTGGAACAGATCTTCTG  992
            |||||.||||||||||||||.|||||||||||||||||||||||||||||||||||||||||.||.||.|||||
Sbjct  952  ATGGGGATGCCACACAGAGGACGGCTGAACGTGCTTGCAAATGTCATCAGGAAGGAGCTGGAGCAAATATTCTG  1025

Query  993  TCAATTCGATTCAAAGCTGGAGGCAGCTGATGAGGGCTCCGGAGATGTGAAGTACCACCTGGGCATGTATCACC  1066
            |||.||.||.||||||||||||||||||||||||||.||.||.||..|||||||||||||||||||||||||||
Sbjct 1026  TCAGTTTGACTCAAAGCTGGAGGCAGCTGATGAGGGTTCTGGGGACATGAAGTACCACCTGGGCATGTATCACC  1099

Query 1067  GCAGGATCAATCGTGTCACCGACAGGAACATTACCTTGTCCTTGGTGGCCAACCCTTCCCACCTTGAGGCCGCT  1140
            ||||||||||.|||||.||||||||.|||||.||.||||||||||||||.|||||||||||.||.|||||.|||
Sbjct 1100  GCAGGATCAACCGTGTGACCGACAGAAACATCACTTTGTCCTTGGTGGCTAACCCTTCCCATCTAGAGGCTGCT  1173

Query 1141  GACCCCGTGGTGATGGGCAAGACCAAAGCCGAACAGTTTTACTGTGGCGACACTGAAGGGAAAAAGGTAAGGCC  1214
            |||||.||.||||||||.|||||||||||.||||||||.||||||||.||||||||||||||||||||.|.|.|
Sbjct 1174  GACCCTGTCGTGATGGGAAAGACCAAAGCTGAACAGTTCTACTGTGGAGACACTGAAGGGAAAAAGGTGATGTC  1247

Query 1215  ----------CAGAGAGAGGC-----GTGCAAGGCAG---ATCGTCA----AGGCC--CCATGTTCCAGCATGG  1264
                      ||..|.||.||     .|||..|.|||   ||||| |    ||.||  ||||.|  ||||   |
Sbjct 1248  TATCCTGCTGCATGGGGATGCTGCTTTTGCTGGCCAGGGCATCGT-ATATGAGACCTTCCATCT--CAGC---G  1315

Query 1265  AGTT-CCG--CT-CAC---------------------------CAACA--------------------------  1281
            |.|| |||  || |||                           |||||                          
Sbjct 1316  ACTTGCCGTCCTACACAACCCATGGCACTGTTCATGTGGTTGTCAACAACCAGATTGGCTTCACCACAGACCCT  1389

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 1390  CGGATGGCCCGCTCCTCTCCCTACCCCACTGATGTGGCCCGAGTGGTGAATGCCCCCATTTTCCATGTCAACTC  1463

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 1464  AGATGACCCTGAAGCTGTCATGTATGTATGCAAGGTGGCAGCTGAGTGGAGAAACACCTTCCACAAGGATGTTG  1537

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 1538  TAGTTGATCTGGTGTGTTATCGACGAAATGGCCACAATGAGATGGACGAACCTATGTTTACACAGCCACTCATG  1611

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 1612  TACAAGCAGATCCGCAAGCAGAAGCCTGTACTGCAGAAGTATGCAGAATTGCTAGTCTCCCAGGGTGTCGTCAA  1685

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 1686  TCAGCCTGAGTACGAGGAGGAAATCTCCAAGTATGATAAGATCTGTGAGGAAGCATTTACCAGATCCAAAGATG  1759

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 1760  AGAAGATCTTGCACATCAAGCACTGGCTGGATTCCCCCTGGCCTGGCTTTTTCACCCTGGATGGACAGCCCAGG  1833

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 1834  AGCATGACCTGCCCCTCCACTGGCCTGGAGGAGGATGTCTTGTTCCACATTGGAAAGGTGGCCAGCTCTGTACC  1907

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 1908  TGTGGAGAACTTTACTATCCATGGAGGGCTGAGCCGGATCTTGAAGACCCGCAGAGAGCTTGTGACGAACCGGA  1981

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 1982  CTGTGGACTGGGCCCTGGCAGAGTACATGGCATTTGGCTCACTGCTGAAGGAAGGCATCCATGTGCGGCTGAGT  2055

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2056  GGCCAGGATGTGGAGCGGGGCACCTTCAGCCATCGCCACCATGTGCTCCATGATCAGAATGTTGACAAAAGAAC  2129

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2130  CTGCATCCCCATGAACCACCTTTGGCCAAATCAGGCCCCTTACACTGTATGCAACAGCTCGCTGTCTGAGTACG  2203

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2204  GTGTCCTGGGCTTTGAGCTGGGCTTTGCCATGGCTAGCCCTAATGCTCTGGTTCTCTGGGAGGCCCAGTTTGGT  2277

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2278  GACTTCAACAACATGGCACAGTGCATCATTGACCAGTTCATCTGCCCAGGACAGGCAAAGTGGGTGCGGCAGAA  2351

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2352  TGGCATTGTGCTCCTGCTGCCTCATGGCATGGAAGGCATGGGTCCCGAGCATTCCTCTGCCCGCCCAGAGCGGT  2425

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2426  TTCTGCAGATGTGCAATGATGACCCAGATGTCCTGCCTGACCTGCAGGAAGAAAACTTTGACATCAATCAGCTC  2499

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2500  TATGACTGCAACTGGATTGTTGTCAACTGTTCCACCCCTGGCAACTTCTTCCATGTGCTGCGACGACAGATCTT  2573

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2574  GCTGCCCTTCCGGAAGCCGTTAATCGTCTTCACTCCCAAATCCCTCCTGCGCCACCCTGAGGCAAGAACTAGCT  2647

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2648  TTGACGAGATGCTGCCAGGAACGCACTTCCAGCGTGTGATCCCAGAAAATGGACCTGCAGCTCAGGACCCACAC  2721

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2722  AAAGTCAAGAGACTTCTCTTCTGCACTGGGAAGGTGTACTATGACCTCACCCGAGAGCGCAAAGCCAGGAACAT  2795

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2796  GGAGGAGGAGGTGGCTATTACAAGGATTGAGCAGCTATCACCATTCCCCTTTGACCTCCTGCTGAAAGAGGCAC  2869

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2870  AGAAGTATCCCAATGCTGAGCTGGCCTGGTGCCAGGAAGAGCACAAGAACCAAGGCTACTATGACTATGTCAAG  2943

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 2944  CCAAGACTTCGTACCACCATTGACCGTGCTAAGCCTGTCTGGTATGCTGGCCGAGACCCGGCAGCTGCTCCAGC  3017

Query 1282  --------------------------------------------------------------------------  1281
                                                                                      
Sbjct 3018  CACTGGCAACAAGAAAACACACCTGACAGAGCTGCAGCGCTTTCTGGACACAGCCTTTGACCTGGACGCATTCA  3091

Query 1282  -----------  1281
                       
Sbjct 3092  AGAAATTCTCT  3102

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