Nucleotide Global Alignment

Description

• Query: ccsbBroad304_15683
• Subject: NM_001297611.1
• Aligned Length: 1474
• Identities: 850
• Gaps: 560

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGAACCAGGTTGTTCAGCCCTTAATGAGCAGACACTCTGCATGTAGAGGCAGCCAGGCCCACCTCTCATGGGT  74

Query    1  -----ATGGAG-------------GAG--------------AAGGTG------------------GCCT--ACC  22
                 |.||||             |||              |.||||                  ||||  ||.
Sbjct   75  CGATAAGGGAGACCTGGTGGCCCTGAGCCTCCCCGCCGGCCATGGTGACACCGACGGCCCCATCAGCCTGGACG  148

Query   23  AGTCCTATGAGAGGGCACGGGACATCCAG------GAGGCCG----TGGAGTCCTG-----------CCTGACC  75
            .|.||.|||   ||||||.||||..||||      .||||||    ||....||||           |||||  
Sbjct  149  TGCCCGATG---GGGCACCGGACCCCCAGCGGACCAAGGCCGCCATTGACCACCTGCACCAGAAGATCCTGA--  217

Query   76  CGGGTCAC---------CAAGCTGGAGCTGCAG--------------------------------------CAG  102
             .|.||||         ||||.|.||||.|.||                                      ||.
Sbjct  218  -AGATCACCGAGCAGATCAAGATTGAGCAGGAGGCTCGCGACGACAATGTGGCAGAGTATCTGAAACTGGCCAA  290

Query  103  CAAC-------AGCAGCAGGTGGTAC------------------------------------------------  121
            ||||       |||||||||||..||                                                
Sbjct  291  CAACGCGGACAAGCAGCAGGTGTCACGCATCAAGCAAGTGTTCGAGAAGAAGAACCAGAAGTCAGCCCAGACCA  364

Query  122  ------------------AGCTGGAG----------GGCG-----TGGAGAATG---CCAACG------CGCGG  153
                              ||||||||          ||||     .|||||.||   ..||||      |||||
Sbjct  365  TCGCCCAGCTGCACAAGAAGCTGGAGCACTACCGCCGGCGCCTGAAGGAGATTGAGCAGAACGGGCCCTCGCGG  438

Query  154  ------------GCGCTGCTGGGC---------------AAGTTCAT------CAACGTGCGCGCAGGCATCAG  194
                        |.|||||.||.|               |||..|.|      |||||||||||||||||||||
Sbjct  439  CAGCCCAAGGACGTGCTGCGGGACATGCAGCAGGGGCTGAAGGACGTGGGCGCCAACGTGCGCGCAGGCATCAG  512

Query  195  CGGCTTTGGGGGCGGCGTGGTGGAGGGCGTCAAGGGCAGCCTCTCTGGCCTCTCACAGGCCACCCACACCGCCG  268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  513  CGGCTTTGGGGGCGGCGTGGTGGAGGGCGTCAAGGGCAGCCTCTCTGGCCTCTCACAGGCCACCCACACCGCCG  586

Query  269  TGGTGTCCAAGCCCCGGGAGTTTGCCAGCCTCATCCGCAACAAGTTTGGCAGTGCTGACAACATCGCCCACCTG  342
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  587  TGGTGTCCAAGCCCCGGGAGTTTGCCAGCCTCATCCGCAACAAGTTTGGCAGTGCTGACAACATCGCCCACCTG  660

Query  343  AAGGACCCCCTGGAAGATGGGCCCCCTGAGGAGGCAGCCCGGGCACTGAGCGGCAGTGCCACACTCGTCTCCAG  416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  661  AAGGACCCCCTGGAAGATGGGCCCCCTGAGGAGGCAGCCCGGGCACTGAGCGGCAGTGCCACACTCGTCTCCAG  734

Query  417  CCCCAAGTATGGCAGCGATGATGAGTGCTCCAGCGCCAGCGCCAGCTCAGCCGGGGCAGGCAGCAACTCTGGGG  490
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  735  CCCCAAGTATGGCAGCGATGATGAGTGCTCCAGCGCCAGCGCCAGCTCAGCCGGGGCAGGCAGCAACTCTGGGG  808

Query  491  CTGGGCCTGGTGGGGCGCTGGGGAGCCCTAAGTCCAATGCACTGTATGGTGCTCCTGGAAACCTGGATGCTCTG  564
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  809  CTGGGCCTGGTGGGGCGCTGGGGAGCCCTAAGTCCAATGCACTGTATGGTGCTCCTGGAAACCTGGATGCTCTG  882

Query  565  CTGGAAGAGCTACGGGAGATCAAGGAGGGACAGTCTCACCTGGAGGACTCCATGGAAGACCTGAAGACTCAGCT  638
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  883  CTGGAAGAGCTACGGGAGATCAAGGAGGGACAGTCTCACCTGGAGGACTCCATGGAAGACCTGAAGACTCAGCT  956

Query  639  GCAGAGGGACTACACCTACATGACCCAGTGCCTGCAGGAGGAGCGCTACAGGTACGAGCGGCTGGAGGAGCAGC  712
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  957  GCAGAGGGACTACACCTACATGACCCAGTGCCTGCAGGAGGAGCGCTACAGGTACGAGCGGCTGGAGGAGCAGC  1030

Query  713  TCAACGACCTGACTGAGCTTCATCAGAACGAGATGACGAACCTGAAGCAGGAGCTGGCCA--------------  772
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||              
Sbjct 1031  TCAACGACCTGACTGAGCTTCATCAGAACGAGATGACGAACCTGAAGCAGGAGCTGGCCAGCATGGAGGAGAAG  1104

Query  773  ---------CACTTC-------------------TCCAGGAGGGACCCTTGGACTTCT----------------  802
                     ||.|.|                   |||||||||   ||.||||.|.||                
Sbjct 1105  GTGGCCTACCAGTCCTATGAGAGGGCACGGGACATCCAGGAGG---CCGTGGAGTCCTGCCTGACCCGGGTCAC  1175

Query  803  -----------------------------TTGTGTGTCCAGTT--------TGG-------------------C  820
                                         ..||| ||.|||.|        |||                   .
Sbjct 1176  CAAGCTGGAGCTGCAGCAGCAACAGCAGCAGGTG-GTACAGCTGGAGGGCGTGGAGAATGCCAACGCGCGGGCG  1248

Query  821  CTCCTGCCCAAACTGTCCAT--------TCCAGCAGCTCCTGCCC--CCTTCT-CTGTACTTG-----------  872
            ||.|||..|||   ||.|||        |||.|..||||.||.||  .||.|| .|||.|.||           
Sbjct 1249  CTGCTGGGCAA---GTTCATCAACGTGATCCTGGCGCTCATGGCCGTGCTGCTGGTGTTCGTGTCCACCATCGC  1319

Query  873  ---CTTCTGTC----------TGA-------------------------CACCTTC----TC-----CCTGTTG  899
               |||| .||          |||                         ||||.||    ||     |||||| 
Sbjct 1320  CAACTTC-ATCACGCCCCTCATGAAGACACGCCTGCGCATCACCAGCACCACCCTCCTGGTCCTCGTCCTGTT-  1391

Query  900  GCCT------GAAG----GGAGCTTAGAATGCAGC-CCTA---CCTGGAGA-----------------  936
             |||      ||||    ||      ||.|.|..| ||||   |||||||.                 
Sbjct 1392  -CCTCCTCTGGAAGCACTGG------GACTCCCTCACCTACCTCCTGGAGCACGTGTTGCTGCCCAGC  1452