Nucleotide Global Alignment

Description

• Query: ccsbBroad304_15683
• Subject: NM_001297613.1
• Aligned Length: 1429
• Identities: 850
• Gaps: 515

Alignment

Query    1  ----------------------------------ATGGAG-------------GAG--------------AAGG  13
                                              |.||||             |||              |.||
Sbjct    1  ATGAAGTCCAAGGAGGAAGAGACTGCTGTCGATAAGGGAGACCTGGTGGCCCTGAGCCTCCCCGCCGGCCATGG  74

Query   14  TG------------------GCCT--ACCAGTCCTATGAGAGGGCACGGGACATCCAG------GAGGCCG---  58
            ||                  ||||  ||..|.||.|||   ||||||.||||..||||      .||||||   
Sbjct   75  TGACACCGACGGCCCCATCAGCCTGGACGTGCCCGATG---GGGCACCGGACCCCCAGCGGACCAAGGCCGCCA  145

Query   59  -TGGAGTCCTG-----------CCTGACCCGGGTCAC---------CAAGCTGGAGCTGCAG------------  99
             ||....||||           |||||   .|.||||         ||||.|.||||.|.||            
Sbjct  146  TTGACCACCTGCACCAGAAGATCCTGA---AGATCACCGAGCAGATCAAGATTGAGCAGGAGGCTCGCGACGAC  216

Query  100  --------------------------CAGCAAC-------AGCAGCAGGTGGTAC-------------------  121
                                      ||.||||       |||||||||||..||                   
Sbjct  217  AATGTGGCAGAGTATCTGAAACTGGCCAACAACGCGGACAAGCAGCAGGTGTCACGCATCAAGCAAGTGTTCGA  290

Query  122  -----------------------------------------------AGCTGGAG----------GGCG-----  133
                                                           ||||||||          ||||     
Sbjct  291  GAAGAAGAACCAGAAGTCAGCCCAGACCATCGCCCAGCTGCACAAGAAGCTGGAGCACTACCGCCGGCGCCTGA  364

Query  134  TGGAGAATG---CCAACG------CGCGG------------GCGCTGCTGGGC---------------AAGTTC  171
            .|||||.||   ..||||      |||||            |.|||||.||.|               |||..|
Sbjct  365  AGGAGATTGAGCAGAACGGGCCCTCGCGGCAGCCCAAGGACGTGCTGCGGGACATGCAGCAGGGGCTGAAGGAC  438

Query  172  AT------CAACGTGCGCGCAGGCATCAGCGGCTTTGGGGGCGGCGTGGTGGAGGGCGTCAAGGGCAGCCTCTC  239
            .|      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  439  GTGGGCGCCAACGTGCGCGCAGGCATCAGCGGCTTTGGGGGCGGCGTGGTGGAGGGCGTCAAGGGCAGCCTCTC  512

Query  240  TGGCCTCTCACAGGCCACCCACACCGCCGTGGTGTCCAAGCCCCGGGAGTTTGCCAGCCTCATCCGCAACAAGT  313
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  513  TGGCCTCTCACAGGCCACCCACACCGCCGTGGTGTCCAAGCCCCGGGAGTTTGCCAGCCTCATCCGCAACAAGT  586

Query  314  TTGGCAGTGCTGACAACATCGCCCACCTGAAGGACCCCCTGGAAGATGGGCCCCCTGAGGAGGCAGCCCGGGCA  387
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  587  TTGGCAGTGCTGACAACATCGCCCACCTGAAGGACCCCCTGGAAGATGGGCCCCCTGAGGAGGCAGCCCGGGCA  660

Query  388  CTGAGCGGCAGTGCCACACTCGTCTCCAGCCCCAAGTATGGCAGCGATGATGAGTGCTCCAGCGCCAGCGCCAG  461
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  661  CTGAGCGGCAGTGCCACACTCGTCTCCAGCCCCAAGTATGGCAGCGATGATGAGTGCTCCAGCGCCAGCGCCAG  734

Query  462  CTCAGCCGGGGCAGGCAGCAACTCTGGGGCTGGGCCTGGTGGGGCGCTGGGGAGCCCTAAGTCCAATGCACTGT  535
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  735  CTCAGCCGGGGCAGGCAGCAACTCTGGGGCTGGGCCTGGTGGGGCGCTGGGGAGCCCTAAGTCCAATGCACTGT  808

Query  536  ATGGTGCTCCTGGAAACCTGGATGCTCTGCTGGAAGAGCTACGGGAGATCAAGGAGGGACAGTCTCACCTGGAG  609
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  809  ATGGTGCTCCTGGAAACCTGGATGCTCTGCTGGAAGAGCTACGGGAGATCAAGGAGGGACAGTCTCACCTGGAG  882

Query  610  GACTCCATGGAAGACCTGAAGACTCAGCTGCAGAGGGACTACACCTACATGACCCAGTGCCTGCAGGAGGAGCG  683
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  883  GACTCCATGGAAGACCTGAAGACTCAGCTGCAGAGGGACTACACCTACATGACCCAGTGCCTGCAGGAGGAGCG  956

Query  684  CTACAGGTACGAGCGGCTGGAGGAGCAGCTCAACGACCTGACTGAGCTTCATCAGAACGAGATGACGAACCTGA  757
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  957  CTACAGGTACGAGCGGCTGGAGGAGCAGCTCAACGACCTGACTGAGCTTCATCAGAACGAGATGACGAACCTGA  1030

Query  758  AGCAGGAGCTGGCCA-----------------------CACTTC-------------------TCCAGGAGGGA  789
            |||||||||||||||                       ||.|.|                   |||||||||  
Sbjct 1031  AGCAGGAGCTGGCCAGCATGGAGGAGAAGGTGGCCTACCAGTCCTATGAGAGGGCACGGGACATCCAGGAGG--  1102

Query  790  CCCTTGGACTTCT---------------------------------------------TTGTGTGTCCAGTT--  816
             ||.||||.|.||                                             ..||| ||.|||.|  
Sbjct 1103  -CCGTGGAGTCCTGCCTGACCCGGGTCACCAAGCTGGAGCTGCAGCAGCAACAGCAGCAGGTG-GTACAGCTGG  1174

Query  817  ------TGG-------------------CCTCCTGCCCAAACTGTCCAT--------TCCAGCAGCTCCTGCCC  857
                  |||                   .||.|||..|||   ||.|||        |||.|..||||.||.||
Sbjct 1175  AGGGCGTGGAGAATGCCAACGCGCGGGCGCTGCTGGGCAA---GTTCATCAACGTGATCCTGGCGCTCATGGCC  1245

Query  858  --CCTTCT-CTGTACTTG--------------CTTCTGTC----------TGA---------------------  883
              .||.|| .|||.|.||              |||| .||          |||                     
Sbjct 1246  GTGCTGCTGGTGTTCGTGTCCACCATCGCCAACTTC-ATCACGCCCCTCATGAAGACACGCCTGCGCATCACCA  1318

Query  884  ----CACCTTC----TC-----CCTGTTGGCCT------GAAG----GGAGCTTAGAATGCAGC-CCTA---CC  930
                ||||.||    ||     ||||||  |||      ||||    ||      ||.|.|..| ||||   ||
Sbjct 1319  GCACCACCCTCCTGGTCCTCGTCCTGTT--CCTCCTCTGGAAGCACTGG------GACTCCCTCACCTACCTCC  1384

Query  931  TGGAGA-----------------  936
            |||||.                 
Sbjct 1385  TGGAGCACGTGTTGCTGCCCAGC  1407