Nucleotide Global Alignment

Description

• Query: ccsbBroad304_15683
• Subject: NM_001331034.1
• Aligned Length: 1564
• Identities: 850
• Gaps: 650

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCGGCTGCAGAGTCTGGGAACTCAGGCACACCTGCTCGCAGCCCAGTGCTGCCCAGGGTCTGTGACCCCGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGGCCTGACACAGTCCGCAGACAGCTGGGGCCTCAGAGCCCCGGGTACCTCATCGCCGGCACGGCTTCGGGAAA  148

Query    1  ---------------------ATGGAG-------------GAG--------------AAGGTG-----------  15
                                 |.||||             |||              |.||||           
Sbjct  149  CAGTGCCCACACAGGTCGATAAGGGAGACCTGGTGGCCCTGAGCCTCCCCGCCGGCCATGGTGACACCGACGGC  222

Query   16  -------GCCT--ACCAGTCCTATGAGAGGGCACGGGACATCCAG------GAGGCCG----TGGAGTCCTG--  68
                   ||||  ||..|.||.|||   ||||||.||||..||||      .||||||    ||....||||  
Sbjct  223  CCCATCAGCCTGGACGTGCCCGATG---GGGCACCGGACCCCCAGCGGACCAAGGCCGCCATTGACCACCTGCA  293

Query   69  ---------CCTGACCCGGGTCAC---------CAAGCTGGAGCTGCAG-------------------------  99
                     |||||   .|.||||         ||||.|.||||.|.||                         
Sbjct  294  CCAGAAGATCCTGA---AGATCACCGAGCAGATCAAGATTGAGCAGGAGGCTCGCGACGACAATGTGGCAGAGT  364

Query  100  -------------CAGCAAC-------AGCAGCAGGTGGTAC--------------------------------  121
                         ||.||||       |||||||||||..||                                
Sbjct  365  ATCTGAAACTGGCCAACAACGCGGACAAGCAGCAGGTGTCACGCATCAAGCAAGTGTTCGAGAAGAAGAACCAG  438

Query  122  ----------------------------------AGCTGGAG----------GGCG-----TGGAGAATG---C  143
                                              ||||||||          ||||     .|||||.||   .
Sbjct  439  AAGTCAGCCCAGACCATCGCCCAGCTGCACAAGAAGCTGGAGCACTACCGCCGGCGCCTGAAGGAGATTGAGCA  512

Query  144  CAACG------CGCGG------------GCGCTGCTGGGC---------------AAGTTCAT------CAACG  178
            .||||      |||||            |.|||||.||.|               |||..|.|      |||||
Sbjct  513  GAACGGGCCCTCGCGGCAGCCCAAGGACGTGCTGCGGGACATGCAGCAGGGGCTGAAGGACGTGGGCGCCAACG  586

Query  179  TGCGCGCAGGCATCAGCGGCTTTGGGGGCGGCGTGGTGGAGGGCGTCAAGGGCAGCCTCTCTGGCCTCTCACAG  252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  587  TGCGCGCAGGCATCAGCGGCTTTGGGGGCGGCGTGGTGGAGGGCGTCAAGGGCAGCCTCTCTGGCCTCTCACAG  660

Query  253  GCCACCCACACCGCCGTGGTGTCCAAGCCCCGGGAGTTTGCCAGCCTCATCCGCAACAAGTTTGGCAGTGCTGA  326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  661  GCCACCCACACCGCCGTGGTGTCCAAGCCCCGGGAGTTTGCCAGCCTCATCCGCAACAAGTTTGGCAGTGCTGA  734

Query  327  CAACATCGCCCACCTGAAGGACCCCCTGGAAGATGGGCCCCCTGAGGAGGCAGCCCGGGCACTGAGCGGCAGTG  400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  735  CAACATCGCCCACCTGAAGGACCCCCTGGAAGATGGGCCCCCTGAGGAGGCAGCCCGGGCACTGAGCGGCAGTG  808

Query  401  CCACACTCGTCTCCAGCCCCAAGTATGGCAGCGATGATGAGTGCTCCAGCGCCAGCGCCAGCTCAGCCGGGGCA  474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  809  CCACACTCGTCTCCAGCCCCAAGTATGGCAGCGATGATGAGTGCTCCAGCGCCAGCGCCAGCTCAGCCGGGGCA  882

Query  475  GGCAGCAACTCTGGGGCTGGGCCTGGTGGGGCGCTGGGGAGCCCTAAGTCCAATGCACTGTATGGTGCTCCTGG  548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  883  GGCAGCAACTCTGGGGCTGGGCCTGGTGGGGCGCTGGGGAGCCCTAAGTCCAATGCACTGTATGGTGCTCCTGG  956

Query  549  AAACCTGGATGCTCTGCTGGAAGAGCTACGGGAGATCAAGGAGGGACAGTCTCACCTGGAGGACTCCATGGAAG  622
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  957  AAACCTGGATGCTCTGCTGGAAGAGCTACGGGAGATCAAGGAGGGACAGTCTCACCTGGAGGACTCCATGGAAG  1030

Query  623  ACCTGAAGACTCAGCTGCAGAGGGACTACACCTACATGACCCAGTGCCTGCAGGAGGAGCGCTACAGGTACGAG  696
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031  ACCTGAAGACTCAGCTGCAGAGGGACTACACCTACATGACCCAGTGCCTGCAGGAGGAGCGCTACAGGTACGAG  1104

Query  697  CGGCTGGAGGAGCAGCTCAACGACCTGACTGAGCTTCATCAGAACGAGATGACGAACCTGAAGCAGGAGCTGGC  770
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105  CGGCTGGAGGAGCAGCTCAACGACCTGACTGAGCTTCATCAGAACGAGATGACGAACCTGAAGCAGGAGCTGGC  1178

Query  771  CA-----------------------CACTTC-------------------TCCAGGAGGGACCCTTGGACTTCT  802
            ||                       ||.|.|                   |||||||||   ||.||||.|.||
Sbjct 1179  CAGCATGGAGGAGAAGGTGGCCTACCAGTCCTATGAGAGGGCACGGGACATCCAGGAGG---CCGTGGAGTCCT  1249

Query  803  ---------------------------------------------TTGTGTGTCCAGTT--------TGG----  819
                                                         ..||| ||.|||.|        |||    
Sbjct 1250  GCCTGACCCGGGTCACCAAGCTGGAGCTGCAGCAGCAACAGCAGCAGGTG-GTACAGCTGGAGGGCGTGGAGAA  1322

Query  820  ---------------CCTCCTGCCCAAACTGTCCAT--------TCCAGCAGCTCCTGCCC--CCTTCT-CTGT  867
                           .||.|||..|||   ||.|||        |||.|..||||.||.||  .||.|| .|||
Sbjct 1323  TGCCAACGCGCGGGCGCTGCTGGGCAA---GTTCATCAACGTGATCCTGGCGCTCATGGCCGTGCTGCTGGTGT  1393

Query  868  ACTTG--------------CTTCTGTC----------TGA-------------------------CACCTTC--  890
            .|.||              |||| .||          |||                         ||||.||  
Sbjct 1394  TCGTGTCCACCATCGCCAACTTC-ATCACGCCCCTCATGAAGACACGCCTGCGCATCACCAGCACCACCCTCCT  1466

Query  891  --TC-----CCTGTTGGCCT------GAAG----GGAGCTTAGAATGCAGC-CCTA---CCTGGAGA-------  936
              ||     ||||||  |||      ||||    ||      ||.|.|..| ||||   |||||||.       
Sbjct 1467  GGTCCTCGTCCTGTT--CCTCCTCTGGAAGCACTGG------GACTCCCTCACCTACCTCCTGGAGCACGTGTT  1532

Query  937  ----------  936
                      
Sbjct 1533  GCTGCCCAGC  1542