Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15750
Subject:
XR_001755677.2
Aligned Length:
2393
Identities:
1127
Gaps:
1263

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACTTTCTCTTTGTCGGAGGAGCTCCTCTGTTTCCTGTGCAGTAGCTCCCGTTGCGGCGGCACCCGTGGCAGCCC  74

Query    1  -----------------ATGGCAGCGACCGATATAGCTCGCCAGGTGGGTGAAGGTTGCCGAACTGTCCCCCTG  57
                             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TGGCGGACGCAGGAGCGATGGCAGCGACCGATATAGCTCGCCAGGTGGGTGAAGGTTGCCGAACTGTCCCCCTG  148

Query   58  GCTGGACATGTGGGGTTTGACAGCTTGCCTGACCAGCTGGTGAATAAGTCCGTCAGCCAGGGCTTCTGCTTCAA  131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  GCTGGACATGTGGGGTTTGACAGCTTGCCTGACCAGCTGGTGAATAAGTCCGTCAGCCAGGGCTTCTGCTTCAA  222

Query  132  CATCCTGTGCGTGGGAGAGACAGGTTTGGGCAAGTCCACCCTCATGGACACCCTGTTCAACACCAAATTCGAAG  205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CATCCTGTGCGTGGGAGAGACAGGTTTGGGCAAGTCCACCCTCATGGACACCCTGTTCAACACCAAATTCGAAG  296

Query  206  GGGAGCCAGCCACCCACACACAGCCGGGTGTCCAGCTCCAGTCTAATACCTATGACCTCCAAGAGAGCAACGTG  279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GGGAGCCAGCCACCCACACACAGCCGGGTGTCCAGCTCCAGTCTAATACCTATGACCTCCAAGAGAGCAACGTG  370

Query  280  AGGCTAAAGCTCACGATCGTTAGCACAGTTGGCTTTGGGGACCAGATCAACAAAGAGGACAGCTACAAGCCTAT  353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  AGGCTAAAGCTCACGATCGTTAGCACAGTTGGCTTTGGGGACCAGATCAACAAAGAGGACAGCTACAAGCCTAT  444

Query  354  CGTGGAATTCATCGATGCACAATTCGAGGCCTACCTGCAGGAAGAGCTAAAGATCCGAAGAGTGCTACACACCT  427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CGTGGAATTCATCGATGCACAATTCGAGGCCTACCTGCAGGAAGAGCTAAAGATCCGAAGAGTGCTACACACCT  518

Query  428  ACCATGACTCCCGAATCCATGTCTGCTTGTATTTCATTGCCCCCACGGGTCATTCCCTGAAGTCTCTGGACCTA  501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  ACCATGACTCCCGAATCCATGTCTGCTTGTATTTCATTGCCCCCACGGGTCATTCCCTGAAGTCTCTGGACCTA  592

Query  502  GTGACTATGAAGAAGCTGGACAGTAAGGTGAACATCATCCCCATCATTGCCAAAGCAGATGCCATTTCGAAGAG  575
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GTGACTATGAAGAAGCTGGACAGTAAGGTGAACATCATCCCCATCATTGCCAAAGCAGATGCCATTTCGAAGAG  666

Query  576  TGAGCTAACAAAGTTCAAAATCAAAATCACCAGCGAGCTTGTCAGCAACGGAGTCCAGATCTATCAGTTTCCTA  649
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TGAGCTAACAAAGTTCAAAATCAAAATCACCAGCGAGCTTGTCAGCAACGGAGTCCAGATCTATCAGTTTCCTA  740

Query  650  CAGATGATGAGTCGGTGGCAGAGATCAATGGAACCATGAACGCCCACCTGCCGTTTGCTGTCATTGGCAGCACA  723
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CAGATGATGAGTCGGTGGCAGAGATCAATGGAACCATGAACGCCCACCTGCCGTTTGCTGTCATTGGCAGCACA  814

Query  724  GAAGAACTGAAGATAGGCAACAAGATGATGAGGGCGCGGCAGTATCCTTGGGGCACTGTGCAGGTTGAAAACGA  797
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
Sbjct  815  GAAGAACTGAAGATAGGCAACAAGATGATGAGGGCGCGGCAGTATCCTTGGGGCACTGTGCAG-----------  877

Query  798  GGCCCACTGCGACTTTGTGAAGCTGCGGGAGATGCTGATTCGGGTCAACATGGAGGATCTGCGGGAGCAGACCC  871
                                                                                      
Sbjct  878  --------------------------------------------------------------------------  877

Query  872  ACACCCGGCACTATGAGCTGTATCGCCGCTGTAAGCTGGAGGAGATGGGCTTCAAGGACACCGACCCTGACAGC  945
                                                                                      
Sbjct  878  --------------------------------------------------------------------------  877

Query  946  AAACCCTTCAGTTTACAGGAGACATATGAGGCCAAAAGGAACGAGTTCCTAGGGGAACTCCAGAAAAAAGAAGA  1019
                      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  878  ----------GTTTACAGGAGACATATGAGGCCAAAAGGAACGAGTTCCTAGGGGAACTCCAGAAAAAAGAAGA  941

Query 1020  GGAGATGAGACAGATGTTCGTCCAGCGAGTCAAAGAGAAAGAAGCGGAGCTCAAAGAGGCAGAGAAAGAGCTGC  1093
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  942  GGAGATGAGACAGATGTTCGTCCAGCGAGTCAAAGAGAAAGAAGCGGAGCTCAAAGAGGCAGAGAAAGAGCTGC  1015

Query 1094  ACGAGAAGTTTGACCGTCTGAAGAAACTGCACCAGGACGAGAAGAAGAAACTGGAGGATAAGAAGAAATCCCTG  1167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016  ACGAGAAGTTTGACCGTCTGAAGAAACTGCACCAGGACGAGAAGAAGAAACTGGAGGATAAGAAGAAATCCCTG  1089

Query 1168  GATGATGAAGTGAATGCTTTCAAGCAAAGAAAGACGGCGGCTGAGCTGCCCCAGTCCCAGGGCTCCCAGGCTGG  1241
            |||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 1090  GATGATGAAGTGAATGCTTTCAAGCAAAGAAAGACGGCGGCTGAGCTGCTCCAGTCCCAGGGCTCCCAGGCTGG  1163

Query 1242  AGGCTCACAGACTCTGAAGAGAGACAAAGAGAAGAAAAA-------TAATC-------CATGGCTG-TGTACTG  1300
            |||||||||||||||||||||||||||||||||||||||       |||||       ||  ||.| ||.||| 
Sbjct 1164  AGGCTCACAGACTCTGAAGAGAGACAAAGAGAAGAAAAACTTTTTTTAATCTTGTCTTCA--GCAGCTGCACT-  1234

Query 1301  AA------------------------------------------------------------------------  1302
            ||                                                                        
Sbjct 1235  AAGTCTAAAGGAGAAGACTGCCATTATAGAAGAGTTAGGGTTCCATATTGTCTCAAATCAGAAATCAACCAATT  1308

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 1309  TCCTCTCCCCTCAAACTGCAAGCACACACACATACACCACACCACTCAACAAGTGTTCATGTGTCCCTGTGTCC  1382

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 1383  AGGCAAGAAGCTCTCTTCCTGACTCACATGGTATTTTAAATGGAAGTGTCTTGTCCTAACTAACAAGGCAGGAA  1456

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 1457  AAGAACCATCAGAGCTGGAAAATGGACGAAATGTAACCTCAGAGAAACAACTACAGGACCACTCACCCAAGTGT  1530

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 1531  AAGTGACTGGGGCAGGACACCTCAGCTGTGGGTATGAAAGTACTGTTCTGTTCACAAGGTTTTGTTTGAGTTTT  1604

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 1605  ATGTTTTTCTTTTAAACATTTCTCTGGTTCGATGGGTTGACTGTCTACAGCCACTGTTAAACATTTCTGAATAT  1678

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 1679  GCAAGAGAAAGTCAAGTGACATTTGTATCTTCTTCAGCATTCGCAGACCTTCTATAGATTCCAGCAAAGGGGGA  1752

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 1753  AAATGTATCCACTATCTAACACTTAGGTAGAGAAGGGAGGGGGTTTAAGCTTAGTGAGGGCAAAATTACTCCAT  1826

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 1827  TCCACCTTCCGAGACCAGTTAGGGTTTTGAGAGAGGTTTCTGCTCAACCTGGGATCTGGAGGGAGAGCTTTGAT  1900

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 1901  GTTGGTAAATCTGCCTTGAATTCATTGGTTTAACTTGCATCAAAATACCATGTGAGTGTGCTCATTCTCATATA  1974

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 1975  TCCCCTACCACCATCACCACCATTCTGCTGTTCAGTGTCTCTTGAGAGAGCCTCTTTGCATGTTTTCCAGAATC  2048

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 2049  TGTGTGTGTTTTTCCTTTCTTCTCCTTTGTTCTTTTTGCTCAAAGGTGTGACCAGTCATTGCCCCTCTGGGGCT  2122

Query 1303  --------------------------------------------------------------------------  1302
                                                                                      
Sbjct 2123  TTCATTCTCCAGGAGAAACATCCCAGAACCAGCACTGTTTAGCCTGATACCTTTCTAATGTCCATGTCAATTTT  2196

Query 1303  -------------------------  1302
                                     
Sbjct 2197  CAATAAAATTCAAAGAAATGCTAAA  2221

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