Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15819
Subject:
XR_876585.2
Aligned Length:
3349
Identities:
856
Gaps:
2458

Alignment

Query    1  -----------------ATGTCCAACCGAGTGGTCTGCCGAGAAGCCAGTCACGCCGGGAGCTGGTACACAGCC  57
                             |||||||||||||||||||||||.||||||||.||||||||||||||||||||.|||
Sbjct    1  GCGGCACAGGCACCAAGATGTCCAACCGAGTGGTCTGCCGGGAAGCCAGCCACGCCGGGAGCTGGTACACCGCC  74

Query   58  TCAGGACCGCAGCTGAATGCACAGCTAGAAGGTTGGCTTTCACAAGTACAGTCTACAAAAAGACCTGCTAGAGC  131
            ||||||||.||||||||.||.|||||.|||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct   75  TCAGGACCTCAGCTGAACGCTCAGCTGGAAGGTTGGCTTTCACAAGTACAGTCTACGAAAAGACCTGCTAGAGC  148

Query  132  CATTATTGCCCCCCATGCAGGATATACGTACTGTGGGTCTTGTGCTGCCCATGCTTATAAACAAGTGGATCCGT  205
            |||||||||.||||||||.|||||.||.|||||||||||.|||||||||||||||||.||||||||||||||.|
Sbjct  149  CATTATTGCACCCCATGCGGGATACACATACTGTGGGTCCTGTGCTGCCCATGCTTACAAACAAGTGGATCCAT  222

Query  206  CTATTACCCGGAGAATTTTCATCCTTGGGCCTTCTCATCATGTGCCCCTCTCTCGATGTGCACTTTCCAGTGTG  279
            ||.|||||||||||||||||||||||||||||||.||||||||||||||.||||||||||||||.|||||||||
Sbjct  223  CTGTTACCCGGAGAATTTTCATCCTTGGGCCTTCCCATCATGTGCCCCTGTCTCGATGTGCACTCTCCAGTGTG  296

Query  280  GATATATATAGGACACCTCTGTATGACCTTCGTATTGACCAAAAGATTTACGGAGAACTGTGGAAGACAGGAAT  353
            ||||||||||||||.|||||||||||.|||||||||||||||||||||||||||||.||.||||||||||||||
Sbjct  297  GATATATATAGGACTCCTCTGTATGATCTTCGTATTGACCAAAAGATTTACGGAGAGCTATGGAAGACAGGAAT  370

Query  354  GTTTGAACGCATGTCTCTGCAGACAGATGAAGATGAACACAGTATTGAAATGCATTTGCCTTATACAGCTAAAG  427
            |||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GTTTGAACGAATGTCTCTGCAGACAGATGAAGATGAACACAGTATTGAAATGCATTTGCCTTATACAGCTAAAG  444

Query  428  CCATGGAAAGCCATAAGGATGAGTTTACCATTATTCCTGTACTGGTTGGAGCTCTGAGTGAGTCAAAAGAACAG  501
            ||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CCATGGAAAGCCATAAAGATGAGTTTACCATTATTCCTGTACTGGTTGGAGCTCTGAGTGAGTCAAAAGAACAG  518

Query  502  GAATTCGGAAAACTCTTCAGTAAATATCTAGCGGATCCTAGTAATCTCTTTGTGGTTTCTTCTGATTTCTGCCA  575
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GAATTCGGAAAACTCTTCAGTAAATATCTAGCGGATCCTAGTAATCTCTTTGTGGTTTCTTCTGATTTCTGCCA  592

Query  576  TTGG----------------------------------------------------------------------  579
            .|||                                                                      
Sbjct  593  CTGGGAAAGCGTGCTCTGGAATGGATTCACAAATGAGCTACCCTCCTTCCCTCAAAGAGTAAGGTTTCTGCTTT  666

Query  580  --------------------------------------------------------------------------  579
                                                                                      
Sbjct  667  ACAGGATTTTTTTTTCCTTGGGTTATTTTTCCTCTCATCTTTTGAATTTGAAAAGAACTGAGGGAAGGCACCTG  740

Query  580  --------------------------------------------------------------------------  579
                                                                                      
Sbjct  741  AAGAAACCACTGATACACTCACTAGGGAGTTGCAGAGCTTGTCCCGCCCCTAGGGCGGAGTCCATGCTCCTAAA  814

Query  580  --------------------------------------------------------------------------  579
                                                                                      
Sbjct  815  GCTAAAGCTCACACTTGAAGTGGAAACAGGGGCTCAGAGAATCCATTTTCCCAGTGTGCCTTCTGAAAGGATAA  888

Query  580  ------GGTCAAAGGTTCCGTTACAGTTACTATGATGAATCCCAGGGGGAGATTTATAGATCCATTGAACATCT  647
                  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GTCTCAGGTCAAAGGTTCCGTTACAGTTACTATGATGAATCCCAGGGGGAGATTTATAGATCCATTGAACATCT  962

Query  648  AGATAAAATGGGTATGAGTATTATAGAACAATTAGACCCTGTATCTTTTAGCAATTACTTGAAGAAATACCATA  721
            ||||||||||||||||||||||||||||||||||||.||||||||||||||||||||.|||||||||||.||||
Sbjct  963  AGATAAAATGGGTATGAGTATTATAGAACAATTAGATCCTGTATCTTTTAGCAATTATTTGAAGAAATATCATA  1036

Query  722  ATACTATATGTGGAAGACATCCCATTGGGGTGTTATTAAATGCTATCACAGAGCTCCAGAAGAATGGAATGAAT  795
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 1037  ATACTATATGTGGAAGACATCCCATTGGGGTGTTATTAAATGCTATCACAGAGCTTCAGAAGAATGGAATGAAT  1110

Query  796  ATGAGTTTTTCGTTTTTGAATTATGCCCAGTCGAGCCAGTGTAGAAACTGGCAAGACAGTTCAGTGAGTTATGC  869
            |||||.|||||.||||||||||||||||||||||||||||||||||.||||||||||||||||||.|||||.||
Sbjct 1111  ATGAGCTTTTCCTTTTTGAATTATGCCCAGTCGAGCCAGTGTAGAAGCTGGCAAGACAGTTCAGTCAGTTACGC  1184

Query  870  AGCTGGAGCACTCACGGTCCAC----------------------------------------------------  891
            ||||||||||||||||||||||                                                    
Sbjct 1185  AGCTGGAGCACTCACGGTCCACTGAAGCTCCGATCCTCAGGGACACCACCTGCACAGACTCGTACTCTGTCCAG  1258

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 1259  GGTCCAGCCTAGCCTTTACCAAGATGTTGGTTCTGGTGTGGGGGGATTCTGAAACCTCAGACTAATAGAACTCT  1332

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 1333  CTTCTTCTTTTCTAGTAGGTGTAGTCCTCCTTAATTTCAACTCATTTTAAAAATGCTTTCTAGTTTGAGGCAGT  1406

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 1407  GGAAGGAAGGCTGGAATCAAAATATTTGCCCAAATTGGCACACAGTGACTTGTAAAGCATTTAGCATATCTGAA  1480

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 1481  ATTTGCACTCTTTGCAGACTCATGCACATATATTCCGCTTTCAGAATAGTTTTGCAAATTGTACACAGACAAAG  1554

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 1555  GGTGGAAGCTTTTTAATAAAAGAAACTGCATTTATAAATGATCTGTATTAGAATATAAGAAATCTCCAGTTATA  1628

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 1629  GACAATTACTACCCATGTTGTACAACAGATACCTTCTATTTTAGTTGCTAATAAAGGGCTACACAACTCAAAAT  1702

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 1703  AGTCTGATTTAAACTTATTGCTTTGTGGTATAAATGGAAATTGTTTTTTATTAATTCTATCTCAGAATTTTTGT  1776

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 1777  TAAAATGGCAAGCCTCAGCTTCGATGTAATAATGTTAAAATTATTTTATTTTTACATTTATGTGATTTTTTTTT  1850

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 1851  AAATCACAGAAATTATAGTCATATTTTAAAGTTAACTTTCAAAACTATAGTCATTGCATTTTTGTGTGTGACAT  1924

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 1925  ACCCTCATGTCATTATTATATTGTACTACAATATAAATTCAAGGATGCTTTAAAAACAAGTAGATTTATTCCTT  1998

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 1999  TCCTCCAATGACTGTGTTCGGTAGTCTGCACATGAAGATATTGAAGAGTGTCATTAGTTGTGTTTCAAGTTGTT  2072

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2073  GCAGACCATCACCACTATGGTTTTTTGTTTGTTTGTTTGTTTTTATTGCTTTAAGCAATTTAACTCTTTCACTT  2146

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2147  GAATTTTTAGCAAGAAATCATTAACAATATTAGTAACAAGGCCTATTGGACTTCTGATAGTCCTGCAAAAAATT  2220

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2221  TGTTTGGGGAGGGCATGATTTTTGGTGCGGCTCTTCCAACTAAAATAATGGTATGGTGTTGTATTTCTTTATCA  2294

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2295  TAGATTTATTCTAGTCATTTTGGGGAGGAAAGTGTTAACTCATTAAGCCATCATGCATGTTGTTCATCATCCCT  2368

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2369  GTTTTACCAACACTGGATGTTTCTATAACATTGGAGAGTGTTAGTCTTCAGTGTTATACCCAAGTAGCACAAGC  2442

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2443  TTTAGATGCCTTGCACCAATTTTCTTTTGGAGATTTACGTTTCTTACTTATTAAATACCAATTTTCTATTCTCA  2516

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2517  AGAATGGGAGAAAATAATACTACCTTTTAGATTTAAAATTTACCTACTTATACATGTAGGAAATATACTCTTAT  2590

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2591  ACATCAGTGTTTTATTTTCCATTATTTAGATACGCTTTTGAGTACTATAAATATTTATTTCTTGTTTAATACAG  2664

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2665  ATTATAAAAATTTCTGAATTGACAATAGTGAATTTTTAAAATAATGTTTTCTGAGTATAGAATTTGAAAATACT  2738

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2739  GAAAAGTCAGAAGAAAAAATCTATTACCTACAATCTCACTACTCCAGAGATAACACTGTTAAATGTTTTTCTGT  2812

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2813  ATTTACTTGTAGTCCTTGTGTTTTTTATGAGTGTGTATGTGTGTGTGTGTGTGTGTGCAACAACAGAATTGAGA  2886

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2887  TTATAGTGCCCATACATTTGCGTTATGCCCTGTTATCCTAAGTATCTACTACCTGTGTCTCTGAAAGCACTATT  2960

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 2961  TTAAAAATGCCTGCCTAATATGCTATACTGTATGAAAATAGTTCTCTCTTTGGATGTTAGGCTGTTTCTAATTT  3034

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 3035  TCCTCAATTTTATAATGGTACGGACATTCTGTGTAAATTAGACCCAGTCTCTAGGATATAATCATGAAAATGAA  3108

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 3109  ATAAATGGTTTACATGATAATTTTGTAGGCCCTTTAAAAGTATGCCAAATTATATTTTCAATAGATTGTATCAA  3182

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 3183  ATTAACAGCACCCCCACATCAGCATCGTTTCTTTTAATTTTTGAAAAATTGTTAAGCAAGTAATTGTTTCTTTT  3256

Query  892  --------------------------------------------------------------------------  891
                                                                                      
Sbjct 3257  TTAAAGACTTTCTTTCGAATTAGTCATTTATTGTCTTTTATAAATTTAGAATGTTTTTTTTGAAAAACAACATT  3330

Query  892  -------------------  891
                               
Sbjct 3331  AAAGAGACGTCTAGTTCTA  3349

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.