Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15910
- Subject:
- XR_001748803.2
- Aligned Length:
- 4215
- Identities:
- 1462
- Gaps:
- 2748
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGTCGTCACTAGATCTCTTAAAAAGATGGACCCTCAGCGGCGCTTCCTCGTAGCGAGCCTAGTGGCGGGTGTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGCATTGAAACGTGAGCGCGACCCGACCTTAAAGAGTGGGGAGCAAAGGGAGGACAGAGCCCTTTAAAACGAGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGGGTGGTGCCTGCCCCTTTAAGGGCGGGGCGTCCGGACGACTGTATCTGAGCCCCAGACTGCCCCGAGTTTCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTCGCAGGCTGCGAGGAAAGGCCCCTAGGCTGGGTCTGGGTGCTTGGCGGCGGCGGCTTCCTCCCCGCTCGTCC 296
Query 1 ----------------------------------------------ATGGAAGCACCTGACTACGAAGTGCTAT 28
||||||||||||||||||||||||||||
Sbjct 297 TCCCCGGGCCCAGAGGCACCTCGGCTTCAGTCATGCTGAGCAGAGTATGGAAGCACCTGACTACGAAGTGCTAT 370
Query 29 CCGTGCGAGAACAGCTATTCCACGAGAGGATCCGCGAGTGTATTATATCAACACTTCTGTTTGCAACACTGTAC 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CCGTGCGAGAACAGCTATTCCACGAGAGGATCCGCGAGTGTATTATATCAACACTTCTGTTTGCAACACTGTAC 444
Query 103 ATCCTCTGCCACATCTTCCTGACCCGCTTCAAGAAGCCTGCTGAGTTCACC----------------------- 153
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ATCCTCTGCCACATCTTCCTGACCCGCTTCAAGAAGCCTGCTGAGTTCACCACAGTTTCATCCTACAAAATGGG 518
Query 154 -------------------------------------------------------------------------- 153
Sbjct 519 CGTAACAATGTCTACCTACTCCATTGTGTGGACCAAAGGAGATGGTTAATGTGAAAGCCCTTTGTGAACCTGAA 592
Query 154 -------------------------------------------------------------------------- 153
Sbjct 593 GTGAGCAACTGCTGGATGAATGTCATTACGGGCACAGGCTCTGTGTCATCTCCTCTCCTAGTGCTTCCACAGCC 666
Query 154 -------------------------------------------------------------------------- 153
Sbjct 667 AGGACCAGAGACCTCCCTGATGACTGGGGAACCTGGTGATGGTGGCCTTTCTCTTTATGGGGAGCCTGAGTATG 740
Query 154 -------------------------------------------------------------------------- 153
Sbjct 741 CTCAGATCGCAGCTTTCCTTCCCTAGACATTGTGTAATTGGGGGTGGGGGCACACTTGCCCCAGTTCCTAGCTC 814
Query 154 -------------------------------------------------------------------------- 153
Sbjct 815 CAGCCTTTCCTCCTCTTAGGATGGCTCAGGATGAGTCCCCCCTCAACAAGGCAGCTACCCAAGAGTAATTCCCC 888
Query 154 -------------------------------------------------------------------------- 153
Sbjct 889 TGGGGACTTTCTGTGTGAATCTCCCCTTCCCCCTCCTCTCTTTTCCCTTTCCTGGACCCAGCCACTGATGTAAC 962
Query 154 -------------------------------------------------------------------------- 153
Sbjct 963 CAACCTCACAGACTAGTTGTTTATTATATTAATAGTTTGAGCATATAAAGAGGAACTTGTGATGGGAGAGATCT 1036
Query 154 -------------------------------------------------------------------------- 153
Sbjct 1037 AGGGAGGAGTAAAGAAGTATAGGAATGTCTGGCCTGTATTCTCTTCACCTGGGACCACTGATTTTTAAGCTGCC 1110
Query 154 -------------------------------------------------------------------------- 153
Sbjct 1111 ACCTTGGCTGGAGAACAGGCTATGGAGTTCATAATGTGTGGTCTCCTGGAGCCTCCTGTTCAGCTCTGCCTTCT 1184
Query 154 -------------------------------------------------------------------------- 153
Sbjct 1185 TTGAGGGGGCAGGGATGGGGCAGGGAGCACATTGTAATACTAACGGCCTCAGAGCTGCCCCCTGATGTCCTCCT 1258
Query 154 --------------------------ACAGTGGATGATGAAGATGCCACCGTCAACAAGATTGCGCTCGAGCTG 201
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GCCTGTTCCCCGTGCCTCTGTCTCTTACAGTGGATGATGAAGATGCCACCGTCAACAAGATTGCGCTCGAGCTG 1332
Query 202 TGCACCTTTACCCTGGCAATTGCCCTGGGTGCTGTCCTGCTCCTGCCCTTCTCCATCATCAGCAATGAGGTGCT 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TGCACCTTTACCCTGGCAATTGCCCTGGGTGCTGTCCTGCTCCTGCCCTTCTCCATCATCAGCAATGAGGTGCT 1406
Query 276 GCTCTCCCTGCCTCGGAACTACTACATCCAGTGGCTCAACGGCTCCCTCATCCATGGCCTCTGGAACCTTGTTT 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GCTCTCCCTGCCTCGGAACTACTACATCCAGTGGCTCAACGGCTCCCTCATCCATGGCCTCTGGAACCTTGTTT 1480
Query 350 TTCTCTTCTCCAACCTGTCCCTCATCTTCCTCATGCCCTTTGCATATTTCTTCACTGAGTCTGAGGGCTTTGCT 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TTCTCTTCTCCAACCTGTCCCTCATCTTCCTCATGCCCTTTGCATATTTCTTCACTGAGTCTGAGGGCTTTGCT 1554
Query 424 GGCTCCAGAAAGGGTGTCCTGGGCCGGGTCTATGAGACAGTGGTGATGTTGATGCTCCTCACTCTGCTGGTGCT 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GGCTCCAGAAAGGGTGTCCTGGGCCGGGTCTATGAGACAGTGGTGATGTTGATGCTCCTCACTCTGCTGGTGCT 1628
Query 498 AGGTATGGTGTGGGTGGCATCAGCCATTGTGGACAAGAACAAGGCCAACAGAGAGTCACTCTATGACTTTTGGG 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AGGTATGGTGTGGGTGGCATCAGCCATTGTGGACAAGAACAAGGCCAACAGAGAGTCACTCTATGACTTTTGGG 1702
Query 572 AGTACTATCTCCCCTACCTCTACTCATGCATCTCCTTCCTTGGGGTTCTGCTGCTCCTGGTGTGTACTCCACTG 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 AGTACTATCTCCCCTACCTCTACTCATGCATCTCCTTCCTTGGGGTTCTGCTGCTCCTGGTGTGTACTCCACTG 1776
Query 646 GGTCTCGCCCGCATGTTCTCCGTCACTGGGAAGCTGCTAGTCAAGCCCCGGCTGCTGGAAGACCTGGAGGAGCA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 GGTCTCGCCCGCATGTTCTCCGTCACTGGGAAGCTGCTAGTCAAGCCCCGGCTGCTGGAAGACCTGGAGGAGCA 1850
Query 720 GCTGTACTGCTCAGCCTTTGAGGAGGCAGCCCTGACCCGCAGGATCTGTAATCCTACTTCCTGCTGGCTGCCTT 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 GCTGTACTGCTCAGCCTTTGAGGAGGCAGCCCTGACCCGCAGGATCTGTAATCCTACTTCCTGCTGGCTGCCTT 1924
Query 794 TAGACATGGAGCTGCTACACAGACAGGTCCTGGCTCTGCAGACACAGAGGGTCCTGCTGGAGAAGAGGCGGAAG 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 TAGACATGGAGCTGCTACACAGACAGGTCCTGGCTCTGCAGACACAGAGGGTCCTGCTGGAGAAGAGGCGGAAG 1998
Query 868 GCTTCAGCCTGGCAACGGAACCTGGGCTACCCCCTGGCTATGCTGTGCTTGCTGGTGCTGACGGGCCTGTCTGT 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999 GCTTCAGCCTGGCAACGGAACCTGGGCTACCCCCTGGCTATGCTGTGCTTGCTGGTGCTGACGGGCCTGTCTGT 2072
Query 942 GCTCATTGTGGCCATCCACATCCTGGAGCTGCTCATCGATGAGGCTGCCATGCCCCGAGGCATGCAGGGTAC-- 1013
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||...||
Sbjct 2073 GCTCATTGTGGCCATCCACATCCTGGAGCTGCTCATCGATGAGGCTGCCATGCCCCGAGGCATGCAGCAAACCT 2146
Query 1014 --CTCCT-------TAGGCC-AG---------------GTCTCCTT-----CTC----CAA-GCTG-------- 1044
||||| |||.|| || |||||||| ||| ||| ||||
Sbjct 2147 GTCTCCTGGGACTCTAGACCGAGCACTTCTTGGACTTTGTCTCCTTTGGGACTCTGAGCAACGCTGATGGGAAG 2220
Query 1045 -------------------------------------------------------------------------- 1044
Sbjct 2221 TGGGGCAAGTTTTCATCAACCTCAGGTTCAGAAAGAAGGAAAAGACTTAATTTGAAAGGAGGGCTGGTGGTTCA 2294
Query 1045 -------------------------------------------GGCTC------------------CTTTGG-- 1055
||||| ||||||
Sbjct 2295 GTAGAATCTGATCAGAAGAAAATAAAAAGAGGCCAGGTGCAGTGGCTCACACCTGTAATCCTAGCACTTTGGGA 2368
Query 1056 -----------------TGC------------------------------------------------------ 1058
|||
Sbjct 2369 GGCTGAGGCGGGTAGATTGCTTGAGTTTAGGATTTCAAGACCAGCCTGAGCAACATGGTGAAACCCGGCCTCTA 2442
Query 1059 -------------------------CGT---------------CATTC-------------------------- 1066
||| |||||
Sbjct 2443 CAAAAAGTACAAAAAATTAGCCAGACGTGGTGGTGCGTGCTTGCATTCCCAGCTACGTGGGAGGCTGACGTGGG 2516
Query 1067 -------------------------AGGTTGTA----------------------------------------- 1074
||||||.|
Sbjct 2517 AAGATCGCTTAAGCCCAGAAGGTCAAGGTTGCAGTGAGCTGAAATCGCACCACTGCACTCCAGCCTGGGTGACA 2590
Query 1075 --------------CTCA-------------------------------------------------------- 1078
||||
Sbjct 2591 AAGTGAGACCCTGTCTCAAAAAAAAAAAAAGAAGTGGGCTGGGAGAGAGCTCTGTTCCCTTTGAGATGAGTTAT 2664
Query 1079 ----TCTT----------------------------------TTACCTAATGGTGTCCTCAGTTGTGGGCTTCT 1114
|||| ||||||||||||||||||||||||||||||||
Sbjct 2665 TAATTCTTGGAGCCAGCCAGTTCTTCCTTAATGCAGTGGCAGTTACCTAATGGTGTCCTCAGTTGTGGGCTTCT 2738
Query 1115 ATAGCTCTCCACTCTTCCGGAGCCTGCGGCCCAGATGGCACGACACTGCCATGACGCAGATAATTGGGAACTGT 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 ATAGCTCTCCACTCTTCCGGAGCCTGCGGCCCAGATGGCACGACACTGCCATGACGCAGATAATTGGGAACTGT 2812
Query 1189 GTCTGTCTCCTGGTCCTAAGCTCAGCACTTCCTGTCTTCTCTCGAACCCTGGGGCTCACTCGCTTTGACCTGCT 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813 GTCTGTCTCCTGGTCCTAAGCTCAGCACTTCCTGTCTTCTCTCGAACCCTGGGGCTCACTCGCTTTGACCTGCT 2886
Query 1263 GGGTGACTTTGGACGCTTCAACTGGCTGGGCAATTTCTACATTGTGTTCCTCTACAACGCAGCCTTTGCAGGCC 1336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887 GGGTGACTTTGGACGCTTCAACTGGCTGGGCAATTTCTACATTGTGTTCCTCTACAACGCAGCCTTTGCAGGCC 2960
Query 1337 TCACCACACTCTGTCTGGTGAAGACCTTCACTGCAGCTGTGCGGGCAGAGCTGATCCGGGCCTTTGGGCTGGAC 1410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961 TCACCACACTCTGTCTGGTGAAGACCTTCACTGCAGCTGTGCGGGCAGAGCTGATCCGGGCCTTTGGGCTGGAC 3034
Query 1411 AGACTGCCGCTGCCCGTCTCCGGTTTCCCCCAGGCATCTAGGAAGACCCAGCACCAG----------------- 1467
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035 AGACTGCCGCTGCCCGTCTCCGGTTTCCCCCAGGCATCTAGGAAGACCCAGCACCAGTGACCTCCAGCTGGGGG 3108
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 3109 TGGGAAGGAAAAAACTGGACACTGCCATCTGCTGCCTAGGCCTGGAGGGAAGCCCAAGGCTACTTGGACCTCAG 3182
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 3183 GACCTGGAATCTGAGAGGGTGGGTGGCAGAGGGGAGCAGAGCCATCTGCACTATTGCATAATCTGAGCCAGAGT 3256
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 3257 TTGGGACCAGGACCTCCTGCTTTTCCATACTTAACTGTGGCCTCAGCATGGGGTAGGGCTGGGTGACTGGGTCT 3330
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 3331 AGCCCCTGATCCCAAATCTGTTTACACATCAATCTGCCTCACTGCTGTTCTGGGCCATCCCCATAGCCATGTTT 3404
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 3405 ACATGATTTGATGTGCAATAGGGTGGGGTAGGGGCAGGGAAAGGACTGGGCCAGGGCAGGCTCGGGAGATAGAT 3478
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 3479 TGTCTCCCTTGCCTCTGGCCCAGCAGAGCCTAAGCACTGTGCTATCCTGGAGGGGCTTTGGACCACCTGAAAGA 3552
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 3553 CCAAGGGGATAGGGAGGAGGAGGCTTCAGCCATCAGCAATAAAGTTGATCCCAGGGTTTGCTTTGTTTTTTTAA 3626
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 3627 AGCACCTGTCTCTGTGTATATTTGAACAGCCTTGCTCCCACCAGCCCGGCGTCTGCCCAGTAAGAGAAGCAGAG 3700
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 3701 GGGTCCTGCCCACCATCCTTTTCCTTCCCCTTCATCTATATTATTACCATCCTTTGGGGACTTGGATCTGGTGT 3774
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 3775 TAGGCCATGCAGTTGGGCAGTGGGAAACTCCTCCATCCTCAGTCTTGCTTAAAGCTGGCTTGTCCCCTGACTCC 3848
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 3849 TCCTTATATTCATGGCCTTGTTTCTGTACCTTGAGTATTGGGGGTAGGACATGGGCATAGGAGTAGGCTAACCT 3922
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 3923 CCCCGATACACTCATACCTTCAGCCCTATCCTCCCTGGCTTAACTATTGGATATAGAGTAAAATAAGTGGCTGG 3996
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 3997 CTGACAAGGATTTTCATTTCCTACCTGAGAGAAGAATCTAGCTTTTTACTAGAGGCCATCAGTTTCTTGAAAAG 4070
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 4071 CCCATGTGCTATGTTGGGAGTAAGAGCGCAAAACTTAGGCTTATACAGATTGTGTATTGCACAGCTTCCAGGGA 4144
Query 1468 ----------------------------------------------------------------------- 1467
Sbjct 4145 CACCATTCACCTCATAGTCATTGTGTGGATAGTTACTATGATAGTTTTCTAATAAATGTCAGTCATCTTGA 4215
