Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15910
- Subject:
- XR_245944.3
- Aligned Length:
- 2925
- Identities:
- 1410
- Gaps:
- 1511
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACTAGATCTCTTAAAAAGATGGACCCTCAGCGGCGCTTCCTCGTAGCGAGCCTAGTGGCGGGTGTTTGCATTGA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AACGTGAGCGCGACCCGACCTTAAAGAGTGGGGAGCAAAGGGAGGACAGAGCCCTTTAAAACGAGGCGGGTGGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCCTGCCCCTTTAAGGGCGGGGCGTCCGGACGACTGTATCTGAGCCCCAGACTGCCCCGAGTTTCTGTCGCAGG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTGCGAGGAAAGGCCCCTAGGCTGGGTCTGGGTGCTTGGCGGCGGCGGCTTCCTCCCCGCTCGTCCTCCCCGGG 296
Query 1 --------------------------------------ATGGAAGCACCTGACTACGAAGTGCTATCCGTGCGA 36
||||||||||||||||||||||||||||||||||||
Sbjct 297 CCCAGAGGCACCTCGGCTTCAGTCATGCTGAGCAGAGTATGGAAGCACCTGACTACGAAGTGCTATCCGTGCGA 370
Query 37 GAACAGCTATTCCACGAGAGGATCCGCGAGTGTATTATATCAACACTTCTGTTTGCAACACTGTACATCCTCTG 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GAACAGCTATTCCACGAGAGGATCCGCGAGTGTATTATATCAACACTTCTGTTTGCAACACTGTACATCCTCTG 444
Query 111 CCACATCTTCCTGACCCGCTTCAAGAAGCCTGCTGAGTTCACCACAGTGGATGATGAAGATGCCACCGTCAACA 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCACATCTTCCTGACCCGCTTCAAGAAGCCTGCTGAGTTCACCACAGTGGATGATGAAGATGCCACCGTCAACA 518
Query 185 AGATTGCGCTCGAGCTGTGCACCTTTACCCTGGCAATTGCCCTGGGTGCTGTCCTGCTCCTGCCCTTCTCCATC 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AGATTGCGCTCGAGCTGTGCACCTTTACCCTGGCAATTGCCCTGGGTGCTGTCCTGCTCCTGCCCTTCTCCATC 592
Query 259 ATCAGCAATGAGGTGCTGCTCTCCCTGCCTCGGAACTACTACATCCAGTGGCTCAACGGCTCCCTCATCCATGG 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATCAGCAATGAGGTGCTGCTCTCCCTGCCTCGGAACTACTACATCCAGTGGCTCAACGGCTCCCTCATCCATGG 666
Query 333 CCTCTGGAACCTTGTTTTTCTCTTCTCCAACCTGTCCCTCATCTTCCTCATGCCCTTTGCATATTTCTTCACTG 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CCTCTGGAACCTTGTTTTTCTCTTCTCCAACCTGTCCCTCATCTTCCTCATGCCCTTTGCATATTTCTTCACTG 740
Query 407 AGTCTGAGGGCTTTGCTGGCTCCAGAAAGGGTGTCCTGGGCCGGGTCTATGAGACAGTGGTGATGTTGATGCTC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AGTCTGAGGGCTTTGCTGGCTCCAGAAAGGGTGTCCTGGGCCGGGTCTATGAGACAGTGGTGATGTTGATGCTC 814
Query 481 CTCACTCTGCTGGTGCTAGGTATGGTGTGGGTGGCATCAGCCATTGTGGACAAGAACAAGGCCAACAGAGAGTC 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CTCACTCTGCTGGTGCTAGGTATGGTGTGGGTGGCATCAGCCATTGTGGACAAGAACAAGGCCAACAGAGAGTC 888
Query 555 ACTCTATGACTTTTGGGAGTACTATCTCCCCTACCTCTACTCATGCATCTCCTTCCTTGGGGTTCTGCTGCTCC 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ACTCTATGACTTTTGGGAGTACTATCTCCCCTACCTCTACTCATGCATCTCCTTCCTTGGGGTTCTGCTGCTCC 962
Query 629 TGGTGTGTACTCCACTGGGTCTCGCCCGCATGTTCTCCGTCACTGGGAAGCTGCTAGTCAAGCCCCGGCTGCTG 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGGTGTGTACTCCACTGGGTCTCGCCCGCATGTTCTCCGTCACTGGGAAGCTGCTAGTCAAGCCCCGGCTGCTG 1036
Query 703 GAAGACCTGGAGGAGCAGCTGTACTGCTCAGCCTTTGAGGAGGCAGCCCTGACCCGCAGGATCTGTAATCCTAC 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GAAGACCTGGAGGAGCAGCTGTACTGCTCAGCCTTTGAGGAGGCAGCCCTGACCCGCAGGATCTGTAATCCTAC 1110
Query 777 TTCCTGCTGGCTGCCTTTAGACATGGAGCTGCTACACAGACAGGTCCTGGCTCTGCAGACACAGAGGGTCCTGC 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TTCCTGCTGGCTGCCTTTAGACATGGAGCTGCTACACAGACAGGTCCTGGCTCTGCAGACACAGAGGGTCCTGC 1184
Query 851 TGGAGAAGAGGCGGAAGGCTTCAGCCTGGCAACGGAACCTGGGCTACCCCCTGGCTATGCTGTGCTTGCTGGTG 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TGGAGAAGAGGCGGAAGGCTTCAGCCTGGCAACGGAACCTGGGCTACCCCCTGGCTATGCTGTGCTTGCTGGTG 1258
Query 925 CTGACGGGCCTGTCTGTGCTCATTGTGGCCATCCACATCCTGGAGCTGCTCATCGATGAGGCTGCCATGCCCCG 998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CTGACGGGCCTGTCTGTGCTCATTGTGGCCATCCACATCCTGGAGCTGCTCATCGATGAGGCTGCCATGCCCCG 1332
Query 999 AGGCATGCAGGGTACCTCCTTAGGCCAGGTCTCCTTCTCCAAGCTGGGCTCCTTTGGTGCCGTCATTCAGGTTG 1072
||||||||| |||| |||.||||..||||
Sbjct 1333 AGGCATGCA-GGTA------------------------CCAGGCTGCCCTCC---------------------- 1359
Query 1073 TACTCATCTTTTACCTAATGGTGTCCTCAGTTGTGGGCTTCTATAGCTCTCCACTCTTCCGGAGCCTGCGGCCC 1146
||.| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 ----CACC--TTACCTAATGGTGTCCTCAGTTGTGGGCTTCTATAGCTCTCCACTCTTCCGGAGCCTGCGGCCC 1427
Query 1147 AGATGGCACGACACTGCCATGACGCAGATAATTGGGAACTGTGTCTGTCTCCTGGTCCTAAGCTCAGCACTTCC 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1428 AGATGGCACGACACTGCCATGACGCAGATAATTGGGAACTGTGTCTGTCTCCTGGTCCTAAGCTCAGCACTTCC 1501
Query 1221 TGTCTTCTCTCGAACCCTGGGGCTCACTCGCTTTGACCTGCTGGGTGACTTTGGACGCTTCAACTGGCTGGGCA 1294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1502 TGTCTTCTCTCGAACCCTGGGGCTCACTCGCTTTGACCTGCTGGGTGACTTTGGACGCTTCAACTGGCTGGGCA 1575
Query 1295 ATTTCTACATTGTGTTCCTCTACAACGCAGCCTTTGCAGGCCTCACCACACTCTGTCTGGTGAAGACCTTCACT 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1576 ATTTCTACATTGTGTTCCTCTACAACGCAGCCTTTGCAGGCCTCACCACACTCTGTCTGGTGAAGACCTTCACT 1649
Query 1369 GCAGCTGTGCGGGCAGAGCTGATCCGGGCCTTTGGGCTGGACAGACTGCCGCTGCCCGTCTCCGGTTTCCCCCA 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1650 GCAGCTGTGCGGGCAGAGCTGATCCGGGCCTTTGGGCTGGACAGACTGCCGCTGCCCGTCTCCGGTTTCCCCCA 1723
Query 1443 GGCATCTAGGAAGACCCAGCACCAG------------------------------------------------- 1467
|||||||||||||||||||||||||
Sbjct 1724 GGCATCTAGGAAGACCCAGCACCAGTGACCTCCAGCTGGGGGTGGGAAGGAAAAAACTGGACACTGCCATCTGC 1797
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 1798 TGCCTAGGCCTGGAGGGAAGCCCAAGGCTACTTGGACCTCAGGACCTGGAATCTGAGAGGGTGGGTGGCAGAGG 1871
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 1872 GGAGCAGAGCCATCTGCACTATTGCATAATCTGAGCCAGAGTTTGGGACCAGGACCTCCTGCTTTTCCATACTT 1945
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 1946 AACTGTGGCCTCAGCATGGGGTAGGGCTGGGTGACTGGGTCTAGCCCCTGATCCCAAATCTGTTTACACATCAA 2019
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2020 TCTGCCTCACTGCTGTTCTGGGCCATCCCCATAGCCATGTTTACATGATTTGATGTGCAATAGGGTGGGGTAGG 2093
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2094 GGCAGGGAAAGGACTGGGCCAGGGCAGGCTCGGGAGATAGATTGTCTCCCTTGCCTCTGGCCCAGCAGAGCCTA 2167
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2168 AGCACTGTGCTATCCTGGAGGGGCTTTGGACCACCTGAAAGACCAAGGGGATAGGGAGGAGGAGGCTTCAGCCA 2241
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2242 TCAGCAATAAAGTTGATCCCAGGGTTTGCTTTGTTTTTTTAAAGCACCTGTCTCTGTGTATATTTGAACAGCCT 2315
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2316 TGCTCCCACCAGCCCGGCGTCTGCCCAGTAAGAGAAGCAGAGGGGTCCTGCCCACCATCCTTTTCCTTCCCCTT 2389
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2390 CATCTATATTATTACCATCCTTTGGGGACTTGGATCTGGTGTTAGGCCATGCAGTTGGGCAGTGGGAAACTCCT 2463
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2464 CCATCCTCAGTCTTGCTTAAAGCTGGCTTGTCCCCTGACTCCTCCTTATATTCATGGCCTTGTTTCTGTACCTT 2537
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2538 GAGTATTGGGGGTAGGACATGGGCATAGGAGTAGGCTAACCTCCCCGATACACTCATACCTTCAGCCCTATCCT 2611
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2612 CCCTGGCTTAACTATTGGATATAGAGTAAAATAAGTGGCTGGCTGACAAGGATTTTCATTTCCTACCTGAGAGA 2685
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2686 AGAATCTAGCTTTTTACTAGAGGCCATCAGTTTCTTGAAAAGCCCATGTGCTATGTTGGGAGTAAGAGCGCAAA 2759
Query 1468 -------------------------------------------------------------------------- 1467
Sbjct 2760 ACTTAGGCTTATACAGATTGTGTATTGCACAGCTTCCAGGGACACCATTCACCTCATAGTCATTGTGTGGATAG 2833
Query 1468 --------------------------------------- 1467
Sbjct 2834 TTACTATGATAGTTTTCTAATAAATGTCAGTCATCTTGA 2872
