Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15911
Subject:
XR_001742146.1
Aligned Length:
2208
Identities:
1374
Gaps:
834

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CCTGACCTCATGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGATCCACCGCGCCCGGCCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GACCTGTGGATTTTTAAGGACTGAGCTTCAGTCATTGTCTATTCCTGGAACTTACCAAGAGAAGATCACCCACC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TGGGACATTCTCTGATGAGTTTAACAGGTCTGAAATCTTTGGATCTCTCGCGCAACTCCTTGGTTAGTCTGGAG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGCATTCAGTACCTGACTGCATTGGAGAGTCTCAATCTCTACTACAACTGCATCTCCTCGTTGGCAGAAGTGTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCGGCTCCACGCCTTAACCGAGCTCGTGGATGTGGACTTCCGGCTGAACCCCGTGGTGAAGGTTGAGCCTGACT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ACCGCCTTTTTGTTGTGCACCTGCTCCCCAAGCTCCAGCAGCTGGACGATCGCCCCGTGAGAGCAAGCGAGCGG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AAGGCTTCCCGACTGCATTTTGCATCAGAGGACTCACTCGACTCCAAAGAGAGCGTCCCAGCTTCTTTGAAAGA  518

Query    1  -------------------------------------------------------------ATGGATGCGGATG  13
                                                                         |||||||||||||
Sbjct  519  GGGCAGACCACACCACCCCAGAGCCAAGTGCACCGAGGCCTTGGCCAAGCAGAGCCTGGTCATGGATGCGGATG  592

Query   14  ACGAGGCAGTCCTGAACCTCATTGCAGAGTGCGAGTGGGACCTCGGCAGGCCTCCCGGGAGCACGAGCTTCAGC  87
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  ACGAGGCAGTCCTGAACCTCATTGCAGAGTGCGAGTGGGACCTCGGCAGGCCTCCCGGGAGCACGAGCTTCAGC  666

Query   88  CAGAAGGGGCGTGAGGCCGACTCTCGTGGTTCCCAAGAATCCAGACATCTGTTGAGCCCGCAGTTGGTACAGTA  161
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CAGAAGGGGCGTGAGGCCGACTCTCGTGGTTCCCAAGAATCCAGACATCTGTTGAGCCCGCAGTTGGTACAGTA  740

Query  162  CCAGTGTGGGGACTCTGGGAAGCAGGGCCGTGAGACGAGGAGGAGCAGCTGCAGAGGGTGCTGTCTGGAGAAGA  235
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CCAGTGTGGGGACTCTGGGAAGCAGGGCCGTGAGACGAGGAGGAGCAGCTGCAGAGGGTGCTGTCTGGAGAAGA  814

Query  236  TGCCTTGGAGCCAGCTCTGTGGAGAGCTTCCGCCACTGTACGGAGCGGAGCCAGAGGCCTCCCGTGCCCCCAGG  309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TGCCTTGGAGCCAGCTCTGTGGAGAGCTTCCGCCACTGTACGGAGCGGAGCCAGAGGCCTCCCGTGCCCCCAGG  888

Query  310  CCACACACGTACTTCACCCCACACCCAGACTCCATGGATACCGAGGACTCGGCCTCTTCTCAGAAGTTGGATTT  383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CCACACACGTACTTCACCCCACACCCAGACTCCATGGATACCGAGGACTCGGCCTCTTCTCAGAAGTTGGATTT  962

Query  384  GTCAGGAGAAATGGTGCCTGGTCCCCTGCCAGCCCCCGGAAAGTGCAGGAAGCGAAGAATGCCTGTTGGAAGAT  457
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GTCAGGAGAAATGGTGCCTGGTCCCCTGCCAGCCCCCGGAAAGTGCAGGAAGCGAAGAATGCCTGTTGGAAGAT  1036

Query  458  TCCAGACGTTTTCGGACCAGGAGGGTTTGGGCTGCCCGGAGAGAACTCATGGGTCCTCCGTGCCCAAGGAGAGC  531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TCCAGACGTTTTCGGACCAGGAGGGTTTGGGCTGCCCGGAGAGAACTCATGGGTCCTCCGTGCCCAAGGAGAGC  1110

Query  532  CTGAGCAGACAGGACAGCTCAGAAAGCAGGAACGGGAGGACCTTGTCTCAGCCTGAGGCCTCGGAGACTGAGGA  605
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CTGAGCAGACAGGACAGCTCAGAAAGCAGGAACGGGAGGACCTTGTCTCAGCCTGAGGCCTCGGAGACTGAGGA  1184

Query  606  GCAGAGGTCTCGGGGTGTGACCGACACCAGAGAGCCGTCTCCCGGGTCACACTCGGCTCTACCCGGGAAGAAGA  679
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GCAGAGGTCTCGGGGTGTGACCGACACCAGAGAGCCGTCTCCCGGGTCACACTCGGCTCTACCCGGGAAGAAGA  1258

Query  680  CGGCCCTGCAGGCGGCGCTCCTGGAGACGCTCTTGGACCTGGTGGACAGGAGCTGGGGCGGCTGCAGGTCCCTG  753
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CGGCCCTGCAGGCGGCGCTCCTGGAGACGCTCTTGGACCTGGTGGACAGGAGCTGGGGCGGCTGCAGGTCCCTG  1332

Query  754  CACAGCAACGAGGCATTCCTTGCTCAGGCAAGACACATCTTGTCATCTGTTGAAGAATTCACAGCAGCTCAGGA  827
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CACAGCAACGAGGCATTCCTTGCTCAGGCAAGACACATCTTGTCATCTGTTGAAGAATTCACAGCAGCTCAGGA  1406

Query  828  CAGCTCTGCGATGGTGGGTGAAGATGTCGGCTCCCTGGCTCTGGAGAGTAAGTCCCTGCAAAGCCGCCTTGCTG  901
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CAGCTCTGCGATGGTGGGTGAAGATGTCGGCTCCCTGGCTCTGGAGAGTAAGTCCCTGCAAAGCCGCCTTGCTG  1480

Query  902  AGCAGCAGCAGCAGCACGCCCGGGAGATGAGCGAGGTGACGGCGGAGCTGCACCACACACACAAGGAGCTGGAT  975
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  AGCAGCAGCAGCAGCACGCCCGGGAGATGAGCGAGGTGACGGCGGAGCTGCACCACACACACAAGGAGCTGGAT  1554

Query  976  GATTTGAGACAACATTTAGATAAATCTTTGGAAGAGAACAGTAGGTTAAAATCGCTTTTGTTGAGTATGAAAAA  1049
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GATTTGAGACAACATTTAGATAAATCTTTGGAAGAGAACAGTAGGTTAAAATCGCTTTTGTTGAGTATGAAAAA  1628

Query 1050  GGAAGTGAAGAGTGCAGACACTGCAGCCACGTTAAATTTGCAGATCGCTGGACTTCAAACAAGTGTGAAGAGGC  1123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GGAAGTGAAGAGTGCAGACACTGCAGCCACGTTAAATTTGCAGATCGCTGGACTTCAAACAAGTGTGAAGAGGC  1702

Query 1124  TGTGTGGCGAGATTGTGGAACTGAAGCAGCACCTGGAGCACTACGACAAGATCCAGGAGCTCACGCAGATGCTG  1197
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  TGTGTGGCGAGATTGTGGAACTGAAGCAGCACCTGGAGCACTACGACAAGATCCAGGAGCTCACGCAGATGCTG  1776

Query 1198  CAGGAGAGCCACAGCTCCCTGGTCAGCACCAATGAACACCTGCTGCAGGAGCTGAGCCAGGTGCGGGCGCAGCA  1271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  CAGGAGAGCCACAGCTCCCTGGTCAGCACCAATGAACACCTGCTGCAGGAGCTGAGCCAGGTGCGGGCGCAGCA  1850

Query 1272  CAGAGCCGAGGTGGAGCAGATGCACTGGAGCTACCAGGAGCTCAAGAAGACCATGGCCCTGTTTCCACACAGCA  1345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  CAGAGCCGAGGTGGAGCAGATGCACTGGAGCTACCAGGAGCTCAAGAAGACCATGGCCCTGTTTCCACACAGCA  1924

Query 1346  GCGCCAGCCATGGAGGCTGCCAGGCCTGC---------------------------------------------  1374
            |||||||||||||||||||||||||||||                                             
Sbjct 1925  GCGCCAGCCATGGAGGCTGCCAGGCCTGCTGACTCCTGCCGAGAAGCTGGGCCACCCCTTAAGCTTCCTGGTTT  1998

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 1999  ACTAGAAATTCCCAACTGTTCCAAAGTGGTGGTACCCGCAGGCCCGACTGCTAGTTGTGTATGACCACGTCTGC  2072

Query 1375  --------------------------------------------------------------------------  1374
                                                                                      
Sbjct 2073  CGGTCCATGTTTTCAGCACCCATTGCCTGAAGTGTTAGCACCTTCACTCCGGCACTGAACTTCCCAGCCCTGCC  2146

Query 1375  --------------------------------------------------------------  1374
                                                                          
Sbjct 2147  GTGGAAGCTGCCTGCCAGGTCCTCCCCATCCTCAGGTGGAGGCTTCTCTGTTGAGGGGCCTC  2208

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.