Nucleotide Global Alignment

Description

• Query: ccsbBroad304_15939
• Subject: NM_001127360.1
• Aligned Length: 1365
• Identities: 632
• Gaps: 723

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGCGTCCAAAGTCACAGATGCTATAGTCTGGTATCAAAAGAAGATTGGAGCATATGATCAACAAATATGGGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  AAAATCTGTTGAACAGAGAGAAATCAAGGGGCTAAGGAATAAACCAAAGAAAACAGCACATGTGAAACCAGACC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TCATAGATGTTGATCTTGTAAGAGGGTCTGCATTTGCAAAGGCAAAGCCTGAAAGTCCTTGGACTTCTCTGACC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  AGAAAGGGAATTGTTCGAGTTGTATTTTTCCCCTTTTTCTTCCGGTGGTGGTTACAAGTAACATCAAAGGTCAT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CTTTTTCTGGCTTCTTGTCCTTTATCTTCTTCAAGTTGCTGCAATAGTATTATTCTGCTCCACTTCTAGCCCAC  370

Query    1  -----------------------------------------ATGCTGCTCCTGGGAACTGTGCATTGCCAGATT  33
                                                     |||||||||||||||||||||||||||||||||
Sbjct  371  ACAGCATACCTCTGACAGAGGTGATTGGGCCGATATGGCTGATGCTGCTCCTGGGAACTGTGCATTGCCAGATT  444

Query   34  GTTTCCACAAGAACACCCAAACCTCCTCTAAGTACAGGGGGTAAAAGAAGAAGGAAATTAAGAAAAGCAGCCCA  107
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GTTTCCACAAGAACACCCAAACCTCCTCTAAGTACAGGGGGTAAAAGAAGAAGGAAATTAAGAAAAGCAGCCCA  518

Query  108  TTTGGAAGTACATAGGGAAGGAGATGGTTCTAGTACCACAGATAACACACAAGAGGGAGCAGTTCAGAACCACG  181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TTTGGAAGTACATAGGGAAGGAGATGGTTCTAGTACCACAGATAACACACAAGAGGGAGCAGTTCAGAACCACG  592

Query  182  GTACAAGCACCTCTCACAGCGTTGGCACTGTCTTCAGAGATCTCTGGCATGCTGCTTTCTTTTTATCAGGATCA  255
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GTACAAGCACCTCTCACAGCGTTGGCACTGTCTTCAGAGATCTCTGGCATGCTGCTTTCTTTTTATCAGGATCA  666

Query  256  AAGAAAGCAAAGAATTCAATTGATAAATCAACTGAAACTGACAATGGCTATGTATCCCTTGATGGGAAGAAGAC  329
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AAGAAAGCAAAGAATTCAATTGATAAATCAACTGAAACTGACAATGGCTATGTATCCCTTGATGGGAAGAAGAC  740

Query  330  TGTTAAAAGCGGTGAAGATGGAATACAAAACCATGAACCTCAGTGTGAAACTATTCGACCAGAAGAGACAGCCT  403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TGTTAAAAGCGGTGAAGATGGAATACAAAACCATGAACCTCAGTGTGAAACTATTCGACCAGAAGAGACAGCCT  814

Query  404  GGAACACAGGAACACTGAGGAATGGTCCTAGCAAAGATACCCAAAGGACAATAACAAATGTCTCTGATGAAGTC  477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GGAACACAGGAACACTGAGGAATGGTCCTAGCAAAGATACCCAAAGGACAATAACAAATGTCTCTGATGAAGTC  888

Query  478  TCCAGTGAGGAAGGTCCTGAAACAGGATACTCATTACGTCGTCATGTGGACAGGACTTCTGAAGGTGTTCTTCG  551
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TCCAGTGAGGAAGGTCCTGAAACAGGATACTCATTACGTCGTCATGTGGACAGGACTTCTGAAGGTGTTCTTCG  962

Query  552  GAATAGAAAGTCACACCATTATAAGAAACATTACCCTAATGAGGACGCCCCTAAATCGGGTACTAGTTGCAGCT  625
            ||||||||||||||||||||||||||||||||||||||||||||       ||.|     ||||  |||     
Sbjct  963  GAATAGAAAGTCACACCATTATAAGAAACATTACCCTAATGAGG-------TATA-----TACT--TTG-----  1017

Query  626  CTCGCTGTTCAAGT---TCCAGACAGGATTCTGAGAGTGCAAGGCCAGAATCTGAAACAGAAGATGTGTTATGG  696
                 |..|.||||   |.||.||                       |.|||            |.|.||||  
Sbjct 1018  -----TCCTTAAGTGTATACATAC-----------------------GTATC------------TATTTTAT--  1049

Query  697  GAAGACTTGTTACATTGTGCAGAATGCCATTCATCTTGTACCAGTGAGACAGATGTGGAAAATCATCAGATTAA  770
                  .||||||                                                             
Sbjct 1050  ------ATGTTAC-------------------------------------------------------------  1056

Query  771  TCCATGTGTGAAAAAAGAATATAGAGATGACCCTTTTCATCAGAGTCATTTGCCCTGGCTCCATAGTTCCCACC  844
                                                                                      
Sbjct 1057  --------------------------------------------------------------------------  1056

Query  845  CAGGATTAGAAAAAATAAGTGCTATAGTATGGGAAGGTAATGATTGTAAGAAAGCAGACATGTCTGTACTTGAA  918
                                                                                      
Sbjct 1057  --------------------------------------------------------------------------  1056

Query  919  ATCAGTGGAATGATAATGAACAGAGTGAGTTTT  951
                                             
Sbjct 1057  ---------------------------------  1056