Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15940
- Subject:
- NM_172992.3
- Aligned Length:
- 2258
- Identities:
- 929
- Gaps:
- 1207
Alignment
Query 1 ATGGCGTCCAAAGTCACAGATGCTATAGTCTGGTATCAAAAGAAGATTGGAGCATATGATCAACAAATATGGGA 74
||||||||||.|||||||||||||||||||||||||||.||||||||||||||.||||||||||||||||||||
Sbjct 1 ATGGCGTCCAGAGTCACAGATGCTATAGTCTGGTATCAGAAGAAGATTGGAGCCTATGATCAACAAATATGGGA 74
Query 75 AAAATCTGTTGAACAGAGAGAAATCAAGTTTATTAAACTGGGGC-TAAGGAATAAACCAAAGAAAACAGCACAT 147
|||.|||||||||||.||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 75 AAAGTCTGTTGAACAAAGAGAAATCAA-------------GGGCTTAAGGAATAAACCAAAGAAAACAGCACAT 135
Query 148 GTGAAACCAGACCTCATAGATGTTGATCTTGTAAGAGGGTCTGCATTTGCAAAGGCAAAGCCTGAAAGTCCTTG 221
|||||||||||||||||.||||||||||||||.|||||||||||||||||.|||||||||||||||||||||||
Sbjct 136 GTGAAACCAGACCTCATCGATGTTGATCTTGTGAGAGGGTCTGCATTTGCTAAGGCAAAGCCTGAAAGTCCTTG 209
Query 222 GACTTCTCTGACCA-GAAAGGGAATTGTTCGAGTTGTATTTTTCCCCTTTTTCTTCCGGTGGTGGTTACAAGTA 294
||||||||||||.| ||||||| ||||||||||||||.||||||||.||.||||.|||.|||||||||||||||
Sbjct 210 GACTTCTCTGACAAGGAAAGGG-ATTGTTCGAGTTGTCTTTTTCCCTTTCTTCTCCCGCTGGTGGTTACAAGTA 282
Query 295 ACATCAAAGGTCATCTTTTTCTGGCTTCTTGTCCTTTATCTTCTTCAAGTTGCTGCAATAGTATTATTCTGCTC 368
||.||.|..||||||||.|.||||||||||||.||.||||||||.||||||||||||||||||||||||||.||
Sbjct 283 ACGTCCAGAGTCATCTTCTCCTGGCTTCTTGTTCTCTATCTTCTCCAAGTTGCTGCAATAGTATTATTCTGTTC 356
Query 369 CACTTCTAGCCCACACAGCATACCTCTGACAGAGGTGATTGGGCCGATATGGCTGATGCTGCTCCTGGGAACTG 442
|.||.||||||||||.|||||||||||.||.||.|||||||||||.|||||||||||||||||..|||||||.|
Sbjct 357 CGCTCCTAGCCCACATAGCATACCTCTAACTGAAGTGATTGGGCCAATATGGCTGATGCTGCTTTTGGGAACCG 430
Query 443 TGCATTGCCAGATTGTTTCCACAAGAACACCCAAACCTCCTCTAAGTACAGGGGGTAAAAGAAGAAGGAAATTA 516
|||||||||||||||||||.||||||||||||||.|||||.|||.|.|||||.||||||.||||||||||||||
Sbjct 431 TGCATTGCCAGATTGTTTCAACAAGAACACCCAAGCCTCCACTAGGCACAGGCGGTAAACGAAGAAGGAAATTA 504
Query 517 AGAAAAGCAGCCCATTTGGAAGTACATAGGGAAGGAGATGGTTCTAGTACCACAGATAACACACAAGAGGGAGC 590
|||||||||||||||||||||||.||.||||||||.||.||||||||.|||||||||||||||||.||||||||
Sbjct 505 AGAAAAGCAGCCCATTTGGAAGTCCACAGGGAAGGGGACGGTTCTAGCACCACAGATAACACACAGGAGGGAGC 578
Query 591 AGTTCAGAACCACGGTACAAGCACCTCTCACAGCGTTGGCACTGTCTTCAGAGATCTCTGGCATGCTGCTTTCT 664
.||.||||.||||||..||.||.||.||.||||.||||||||||||||||||||.||.||||.|||||||||||
Sbjct 579 GGTGCAGAGCCACGGCGCAGGCGCCCCTTACAGTGTTGGCACTGTCTTCAGAGACCTTTGGCTTGCTGCTTTCT 652
Query 665 TTTTATCAGGATCAAAGAAAGCAAAGAATTCAATTGATAAATCAACTGAAACTGACAATGGCTATGTATCCCTT 738
|.||||||||.||||||||.||||||||||||||||||||.|||||.||.|||||||||||||||||.|||||.
Sbjct 653 TCTTATCAGGGTCAAAGAAGGCAAAGAATTCAATTGATAAGTCAACCGAGACTGACAATGGCTATGTGTCCCTC 726
Query 739 GATGGGAAGAAGACTGTTAAAAGCGGTGAAGATGGAATACAAAACCATGAACCTCAGTGTGAAACTATTCGACC 812
||||||||||.||||||.||||||.||||.||||||..|||..|||||||.|||||||||||||||.||.||||
Sbjct 727 GATGGGAAGAGGACTGTAAAAAGCAGTGAGGATGGAGCACAGTACCATGAGCCTCAGTGTGAAACTGTTGGACC 800
Query 813 AGAAGAGACAGCCTGGAACACAGGAACACTGAGGAATGGTCCTAGCAAAGATACCCAAAGGACAATAACAAATG 886
||||||..||||||||..||||.||||.|..||||.||.||||..|||||||||||||||.|..||||||||||
Sbjct 801 AGAAGACGCAGCCTGGGCCACACGAACGCCAAGGAGTGTTCCTGCCAAAGATACCCAAAGAAAGATAACAAATG 874
Query 887 TCTCTGATGAAGTCTCCAGTGAGGAAGGTCCTGAAACAGGATACTCATTACGTCGTCATGTGGACAGGACTTCT 960
|||||||||||||.|||||||||||.|||||.||||||||||||.||||.|||.|||||||||||||.||||||
Sbjct 875 TCTCTGATGAAGTATCCAGTGAGGAGGGTCCCGAAACAGGATACCCATTGCGTGGTCATGTGGACAGAACTTCT 948
Query 961 GAAGGTGTTCTTCGGAATAGAAAGTCACACCATTATAAGAAACATTACCCTAATGAGG-------TATA----- 1022
|||.|.|.||||||.|||||||||.|||||||||||||.||.|||||..|.||||||| ||.|
Sbjct 949 GAAAGCGGTCTTCGAAATAGAAAGCCACACCATTATAAAAAGCATTATGCAAATGAGGATGCCCCTAAATCGGG 1022
Query 1023 TACT--TTG----------TCCTTAAGTGTATACATAC------------------------------------ 1048
|||| ||| |..|.|||| |.||.||
Sbjct 1023 TACTAGTTGCAGCTCTCGCTGTTCAAGT---TCCAGACAGGATTCTGAGAGCACAAGGCCAGAATCTGAAACCG 1093
Query 1049 -ATATCTATTTT------ATATGTTAC----------------------------------------------- 1068
|.||.||||.| |..||||||
Sbjct 1094 AAGATGTATTATGGGAAGACTTGTTACACTGTGCGGAATGCCGCTCATCTTGTACCAGTGAGACAGATGTGGGA 1167
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1168 AACCCTCAGATAAATCCATGTGGGAAGAAAGAATATAGAGACGACCCTTTTCATCAGAGTCATTTGCCCTGGCT 1241
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1242 TCATAGTTCCCACCCAGGATTAGAAAAAATCAGTGCTATAGTGTGGGAAGGTAACGACTGTAAGAAAGCAGACA 1315
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1316 TGTCTGTACTTGAAATCAGTGGGATGATAATGAACAGAGTGAACAACCATGTCCCAGGCATAGGATACCAGGTA 1389
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1390 TTTGGAAATGCCATCTCTCTAATCCTGGGCTTGACCCCATTTGTTTTCCGACTGTCACAAGCAACAGACTTGGA 1463
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1464 GCAGCTCACAGCCCATTCTGCGTCAGAACTTTATGTGATTGCGTTTGGCTCTAACGAAGATGTCATGGTTCTTT 1537
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1538 CTATGGTCCTGATAAGTTTTGTGGTTCGAGTCTCTCTTGTGTGGATCTTCTTTTTTTTGCTGTGTGTAGCAGAA 1611
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1612 AGAACATATAAGCAACGATTACTCTTTGCAAAACTCTTTGGACACTTGACGTCTGCAAGGAGAGCTCGCAAATC 1685
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1686 TGAGGTTCCGCATTTCCGGTTGAAGAAAGTACAGAATATAAAAATGTGGCTGTCTCTGCGTTCCTATCTTAAGC 1759
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1760 GCCGAGGCCCTCAGCGATCTGTGGATGTCATTGTCTCATCGGCCTTCTTACTGACAATCTCAGTTGTGTTTATC 1833
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1834 TGCTGTGCACAGCTGCTCCACGTGCACGAGATCTTCCTTGACTGTCACTATAACTGGGAGCTGGTGATCTGGTG 1907
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1908 CATCTCCTTAACGCTGTTCCTCCTGAGGTTCGTTACTCTTGGATCAGAAACCAGCAAGAAATACAGCAATACCT 1981
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 1982 CAATCCTACTTACGGAACAGATAAACCTCTACTTGAAAATGGAGAAGAAACCTAACAAAAAGGAGGAGCTGACC 2055
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 2056 CTTGTGAATAATGTGTTAAAGCTGGCTACGAAACTGCTGAAGGAATTGGACAGTCCCTTTAGGTTGTATGGACT 2129
Query 1069 -------------------------------------------------------------------------- 1068
Sbjct 2130 TACAATGAATCCGCTGCTGTATAACATCACCCAGGTTGTCATCCTTTCGGCTGTTTCCGGTGTCATCAGTGACT 2203
Query 1069 -------------------------------------- 1068
Sbjct 2204 TGCTTGGATTTAATTTAAAGCTGTGGAAGATCAAATCG 2241
