Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15997
Subject:
NM_001165955.1
Aligned Length:
2858
Identities:
343
Gaps:
2467

Alignment

Query    1  ATGGATACTGAACCAAACCCGGGAACATCTTCTGTGTCAACAACAACCAGCAGTACCACCACCACCACCATCAC  74
            |||||||.|||.||.|.|.|.||||||   ||.||||||||||||.||||||||||||||||||||||||||||
Sbjct    1  ATGGATAGTGAGCCGAGCTCTGGAACA---TCCGTGTCAACAACAGCCAGCAGTACCACCACCACCACCATCAC  71

Query   75  CACTTCCTCCTCTCGAATGCAGCAGCCACAGATCTCTGTCTACAGTGGTTCAGACCGACATGCTGT--------  140
            |||.||||||||.||||||||||||||||||||||||||||||||.||.|||||||||||||||||        
Sbjct   72  CACATCCTCCTCCCGAATGCAGCAGCCACAGATCTCTGTCTACAGCGGGTCAGACCGACATGCTGTTCAGGTAA  145

Query  141  ----ACAGGCATTGCATCGGCCCCCCAGCTCAGCTGCTCAGTACCTTCAGCAAATGTATGCAGCCCAACAACAG  210
                .|||||.||||||||||||||||||||.||.|||||||||||.|||||.|||||.||.||.||.||.|||
Sbjct  146  TTCAGCAGGCCTTGCATCGGCCCCCCAGCTCGGCAGCTCAGTACCTGCAGCAGATGTACGCGGCTCAGCAGCAG  219

Query  211  CACTTGATGCTGCATACTGCAGCTCTTCAGCAGCAGCATTTAAGCAGCTCCCAGCTTCAGAGCCTTGCTGCTGT  284
            |||.||||||||||.||.||.|||||.|||||||||||..||||||||||.|||||.|||||||||||.|||||
Sbjct  220  CACCTGATGCTGCACACGGCTGCTCTGCAGCAGCAGCACCTAAGCAGCTCGCAGCTCCAGAGCCTTGCGGCTGT  293

Query  285  TCAGGCAAGTTTGTCCAGTGGAAGACCATCTACATCTCCCACAGGAAGTGTCACACAGCAGTCAAGTATGTCCC  358
            .|||||||||||||||||||||||||||||||||||.||||||||.|||||.|||||.||||||||||||||||
Sbjct  294  CCAGGCAAGTTTGTCCAGTGGAAGACCATCTACATCCCCCACAGGCAGTGTTACACAACAGTCAAGTATGTCCC  367

Query  359  AAACGTCTGT-AAGTTCCCTAAATTTTTTTTTCCTG-------------GATTTAAA----------------A  402
            |.||.|||.| ..||.|.|         ||.|||||             ||  |.||                |
Sbjct  368  AGACATCTATCCTGTCCGC---------TTCTCCTGCACCTGCTCAGCTGA--TGAACCGCTCCCAGACGTCCA  430

Query  403  TTT-----------------------------------------------------------------------  405
            .||                                                                       
Sbjct  431  GTTCTACCAGCGGCAGTATTACCCAGCAGACTATGCTACTCGGGAGTACCTCTCCCACCCTAACTGCCAGCCAA  504

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  505  GCCCAGATGTATCTCCGAGCTCAGATGGTTCAGAATTTAACCTTACGCAGCCAGAAGCTGGGTGTCTTATCTAG  578

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  579  CTCACAGAATGGCTCACCAAAAAGCGCTGGTCAAACCCAGTCCTTGACAATTTGCCATAATAAAACAACAGTGA  652

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  653  CCAGTTCTAAAATCAGCCAACGAGACCCTTCTCCAGAGAGCAAGAAGGGAGGAAGCCCAGGTCTGGAATCTCGG  726

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  727  AGCACGGCCGTCACTCGGACATCAAGCATCCACCAGTTAATAGCACCAGCTTCATATTCTCCAATTCAGCCTCA  800

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  801  TTCTCTAATCAAACATCAGCAGATTCCTCTTCATTCACCACCTCCTAAAGTTTCCCATCATCAGCTGCTATTAC  874

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  875  AACAGCAACAACAGCAAATTCAGCCAATCACCCTTCAGAGTCCAAGTCAAGATCCACCCCCATCCCAGCACTGT  948

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  949  ATCCCACTCCCAAACCATGGCCTTTCTCCGGCTCCCAGTAATGCCCAGCCGCAGCATTGCTCCCCAGTTCAGAG  1022

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1023  CCATCCTCCGCCTTTAACTGTGTCTCCCAACCAGGCACAGTCCGCACAGCAGTCTGTAGTGGTGTCTCCTCCCC  1096

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1097  CCCCTCATTCCCCAAGTCAGTCTCCTACTATAATTATCCATCCACAAGCACTTATCCAGCCACACCCTCTTGTG  1170

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1171  TCTTCAGCTCTTCAAACAGGGCCAAATTTGCAGCAGGCTGCTGCTGATCAGGTACAGTCCACCGCACAGCTGAA  1244

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1245  TCTTCCATCCCATCTTCCACTTCCAGCATCCCCTGTTGTACACATTGGCCCTGTCCAGCAGTCTGCCTTGGTGT  1318

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1319  CCCCTGGTCAGCAGATGGTGTCCCCAACATCACACCAGCAGTATTCAGCCCTACAGTCCTCTCCAATTCCCATC  1392

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1393  GCGACCCCTCCACAGATGTCGGCATCTCCTCCAGCTCAGCTCCCACCACTGCCCTTGCAGTCTATGCAGTCTTT  1466

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1467  ACAAGTGCAGCCTGAAATTCTATCCCAGGGCCAGGTTTTGGTGCAGAATGCTTTGGTGTCAGAAGAGGAGCTAC  1540

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1541  CTGCTGCAGAAGCTTTGGTCCAGTTGCCATTTCAGACTCTTCCTCCTCCACAGACTGTTGCGGTAAATCTACAA  1614

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1615  GTACAGCCGCCAGCACCTGTTGATCCACCAGTGGTTTATCAAGTAGAAGATGTGTGTGAGGAAGAAATGCCAGA  1688

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1689  GGAGTCCGATGAGTGTGCAAGGATGGACAGAACCCCCCCACCCCCCACCTTGTCTCCAGCAGCTGTCACTGTGG  1762

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1763  GGAGGGGAGAGGACTTGACATCCGAACATCCTTTGTTAGAGCAAGTGGAGTTGCCTGCTGTGGCCTCAGTCAGT  1836

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1837  GCTTCCGTGATCAAGTCTCCATCAGACCCCACCCATGCCTCTGCTCCTGCACCTCCCCTCTTAATCCCTGCTGC  1910

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1911  CTCCACCAGGAGCAGCAGCACTTCTCTGGCCAGCAGCACTCCCAGCCTGGAAAACAAGCCTCCACAGGCTATTG  1984

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1985  TGAAACCACAGATTTTGACCCACGTTATAGAAGGCTTTGTGATTCAGGAGGGGCTGGAGCCGTTTCCTGTGAGT  2058

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2059  CGATCATCACTGCTGATAGAACAACCTGTGAAGAAGAGGCCTCTCTTGGATAATCAGGTGGTAAACTCTGTGTG  2132

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2133  TGTCCAGCCAGAGTTACAGAATAACACAAAGCATGCAGATAACTCATCCGACACAGAGATAGAAGACATGATGG  2206

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2207  CTGAAGAGACATTGGAAGAAATGGATAGCGAGTTACTCAAGTGTGAATTCTGTGGAAAAATGGGATATCCTAAT  2280

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2281  GAATTTTTACGGTCCAAACGATTCTGTACTATGTCATGTGCCAAAAGGTACAACGTTAGCTGTTCTAAAAAATT  2354

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2355  TGCACTTAGTCGTTGGAATCGTAAGCCTGATAATCAGAGTCTTGGGCATCGGGGCCGTCGTCCAAGTGGCCCTG  2428

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2429  AAGGGGCAGCAAGAGAACATATCCTTAGGCAGCTTCCAATTACTTATCCATCTGCAGAAGAAGACGTGGCCTCT  2502

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2503  CATGAAGATCCTGTGCCTTCTGCTATGACGACCCGTCTGCGAAGGCAGAGCGAGCGGGAAAGAGAGCGAGAGCT  2576

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2577  TCGGGATGTGAGGATTAGGAAGATGCCTGAGAATAGTGACTTGCTCCCAGTCGCACAGACTGAGCCCTCCATAT  2650

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2651  GGACAGTCGACGACGTCTGGGCCTTCATCCATTCTTTGCCCGGCTGCCAGGACGTTGCAGATGAGTTCAGGGCA  2724

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2725  CAAGAGATTGATGGGCAGGCCCTGCTCTTGCTAAAAGAAGACCATCTCATGAGTGCAATGAACATGAAGCTGGG  2798

Query  406  ----------------------------------------------  405
                                                          
Sbjct 2799  CCCAGCCCTGAAGATTTGTGCACGCATCAACTCTCTGAAGGACTCT  2844

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