Nucleotide Global Alignment

Description

Query:
ccsbBroad304_15997
Subject:
XR_241509.4
Aligned Length:
3261
Identities:
388
Gaps:
2865

Alignment

Query    1  ------------------------------------------------------------------ATGGATAC  8
                                                                              ||||||||
Sbjct    1  GCAGCCCATGTTAGTGATGGAGGAGAGAAGATGGCGGAAGCGGAATTTAAGGACCATAGTACAGCTATGGATAC  74

Query    9  TGAACCAAACCCGGGAACATCTTCTGTGTCAACAACAACCAGCAGTACCACCACCACCACCATCACCACTTCCT  82
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TGAACCAAACCCGGGAACATCTTCTGTGTCAACAACAACCAGCAGTACCACCACCACCACCATCACCACTTCCT  148

Query   83  CCTCTCGAATGCAGCAGCCACAGATCTCTGTCTACAGTGGTTCAGACCGACATGCTGT------------ACAG  144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||
Sbjct  149  CCTCTCGAATGCAGCAGCCACAGATCTCTGTCTACAGTGGTTCAGACCGACATGCTGTACAGGTAATTCAACAG  222

Query  145  GCATTGCATCGGCCCCCCAGCTCAGCTGCTCAGTACCTTCAGCAAATGTATGCAGCCCAACAACAGCACTTGAT  218
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GCATTGCATCGGCCCCCCAGCTCAGCTGCTCAGTACCTTCAGCAAATGTATGCAGCCCAACAACAGCACTTGAT  296

Query  219  GCTGCATACTGCAGCTCTTCAGCAGCAGCATTTAAGCAGCTCCCAGCTTCAGAGCCTTGCTGCTGTTCAGGCAA  292
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GCTGCATACTGCAGCTCTTCAGCAGCAGCATTTAAGCAGCTCCCAGCTTCAGAGCCTTGCTGCTGTTCAGGCAA  370

Query  293  GTTTGTCCAGTGGAAGACCATCTACATCTCCCACAGGAAGTGTCACACAGCAGTCAAGTATGTCCCAAACGTCT  366
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GTTTGTCCAGTGGAAGACCATCTACATCTCCCACAGGAAGTGTCACACAGCAGTCAAGTATGTCCCAAACGTCT  444

Query  367  GT-AAGTTC---------CCTAAATTTTTTTTTCCTG--GATTTAAAA----TTT-------------------  405
            .| ||..||         ||||.|         ||||  .|.||||.|    .||                   
Sbjct  445  ATCAACCTCTCCACTTCTCCTACA---------CCTGCACAGTTAATAAGCCGTTCCCAGGCTTCCAGTTCTAC  509

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  510  CAGCGGCAGTATTACCCAACAGACTATGTTACTAGGGAGTACTTCCCCTACCCTAACGGCAAGCCAAGCTCAAA  583

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  584  TGTATCTCCGAGCTCAAATGCTGATTTTCACACCCGCTACCACTGTGGCTGCTGTACAGTCTGACATTCCTGTT  657

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  658  GTCTCGTCGTCATCGTCATCTTCCTGTCAGTCTGCAGCTACTCAGGTTCAGAATTTAACATTACGCAGCCAGAA  731

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  732  GTTGGGTGTATTATCTAGCTCACAGAATGGTCCACCAAAAAGCACTAGTCAAACTCAGTCATTGACAATTTGTC  805

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  806  ATAACAAAACAACAGTGACCAGTTCTAAAATCAGCCAACGAGATCCTTCTCCAGAAAGTAATAAGAAAGGAGAG  879

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  880  AGCCCAAGCCTGGAATCACGAAGCACAGCTGTCACCCGGACATCAAGTATTCACCAGTTAATAGCACCAGCTTC  953

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct  954  ATATTCTCCAATTCAGCCTCATTCTCTAATAAAACATCAGCAGATTCCTCTTCATTCACCACCTTCCAAAGTTT  1027

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1028  CCCATCATCAGCTGATATTACAACAGCAGCAACAGCAAATTCAGCCAATCACACTTCAGAATTCAACTCAAGAC  1101

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1102  CCACCCCCATCCCAGCACTGTATACCACTCCAGAACCATGGCCTTCCTCCAGCTCCCAGTAATGCCCAGTCACA  1175

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1176  GCATTGTTCACCGATTCAGAGTCATCCCTCTCCTTTAACAGTGTCTCCTAATCAGTCACAGTCAGCACAGCAGT  1249

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1250  CTGTAGTGGTGTCTCCTCCACCACCTCATTCACCAAGTCAGTCTCCTACTATAATTATTCATCCACAAGCACTT  1323

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1324  ATTCAGCCACACCCTCTTGTGTCATCAGCTCTCCAGCCAGGGCCAAATTTGCAGCAGTCCACTGCTAATCAGGT  1397

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1398  GCAAGCTACAGCACAGTTGAATCTTCCATCCCATCTTCCACTTCCAGCTTCCCCTGTTGTACACATTGGCCCAG  1471

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1472  TTCAGCAGTCTGCCTTGGTATCCCCAGGCCAGCAGATTGTCTCTCCATCACACCAGCAATATTCATCCCTGCAG  1545

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1546  TCCTCTCCAATCCCAATTGCAAGTCCTCCACAGATGTCGACATCTCCTCCAGCTCAGATTCCACCACTGCCCTT  1619

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1620  GCAGTCTATGCAGTCTTTACAAGTGCAGCCTGAAATTCTGTCCCAGGGCCAGGTTTTGGTGCAGAATGCTTTGG  1693

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1694  TGTCAGAAGAGGAACTTCCAGCTGCAGAAGCTTTGGTCCAGTTGCCATTTCAGACTCTTCCTCCTCCACAGACT  1767

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1768  GTTGCGGTAAACCTACAAGTGCAACCACCAGCACCTGTTGATCCACCAGTGGGAATGCATTTGAACCAGTGTCA  1841

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1842  TCTGCACAAAGTTTTTTCTCTTAAGGTTTATCAGGTAGAAGATGTGTGTGAAGAAGAAATGCCAGAAGAGTCAG  1915

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1916  ATGAATGTGTCCGGATGGATAGAACCCCACCACCACCCACTTTGTCTCCAGCAGCTATAACAGTGGGGAGAGGA  1989

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 1990  GAAGATTTGACTTCTGAACATCCTTTGTTAGAGCAAGTGGAATTACCTGCTGTGGCATCAGTCAGTGCTTCAGT  2063

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2064  AATTAAATCTCCATCAGATCCCTCACATGTTTCTGTTCCACCACCTCCATTGTTACTTCCAGCTGCCACCACAA  2137

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2138  GGAGTAACAGTACATCTATGCACAGTAGCATTCCCAGTATAGAGAACAAACCTCCACAGGCTATTGTTAAACCA  2211

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2212  CAGATCCTAACCCATGTTATTGAAGGCTTTGTGATTCAGGAGGGATTGGAGCCATTTCCTGTGAGTCGTTCCTC  2285

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2286  TTTGCTAATAGAACAGCCTGTGAAAAAACGGCCTCTTTTGGATAATCAGGTGATAAATTCAGTGTGTGTTCAGC  2359

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2360  CAGAGCTACAGAATAATACAAAACATGCGGATAATTCATCTGACACAGAGATGGAAGACATGATTGCTGAAGAG  2433

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2434  ACATTAGAAGAAATGGACAGTGAGTTGCTCAAGTGTGAATTCTGTGGGAAAATGGGATATGCTAATGAATTTTT  2507

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2508  GCGGTCAAAACGATTCTGCACTATGTCATGTGCCAAAAGGTACAATGTTAGCTGTTCTAAAAAATTTGCACTTA  2581

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2582  GTCGTTGGAATCGTAAGCCTGATAATCAAAGTCTTGGGCATCGTGGCCGTCGTCCAAGTGGCCCTGATGGGGCA  2655

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2656  GCGAGAGAACATATCCTTAGGCAGCTTCCAATTACTTATCCATCTGCAGAAGAAGACTTGGCTTCTCATGAAGA  2729

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2730  TTCTGTGCCATCTGCTATGACAACTCGTCTGCGCAGGCAGAGCGAGCGGGAAAGAGAACGTGAGCTTCGGGATG  2803

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2804  TGAGAATTCGGAAAATGCCTGAGAACAGTGACTTGCTACCAGTTGCACAAACAGAGCCATCTATATGGACAGTT  2877

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2878  GATGATGTCTGGGCCTTCATCCATTCTTTGCCTGCACTACTGGGTATTTTCTCATACCCCCCAAGTCGATAAAA  2951

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 2952  ACTGACTAGTCCTGCTTCTGCTGTGACACCTCAGCCGGTGAAGATATTAAAGGTGCTTTCTTCTCTTCAGTCTG  3025

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 3026  ATTTCTCTCGAGAGGCTGCCAGGATATCGCAGATGAATTCAGAGCACAGGAGATTGATGGACAGGCCCTTCTCT  3099

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 3100  TGCTGAAAGAAGACCATCTCATGAGTGCAATGAATATCAAGCTAGGCCCAGCCCTGAAGATCTGTGCACGCATC  3173

Query  406  --------------------------------------------------------------------------  405
                                                                                      
Sbjct 3174  AACTCTCTGAAGGAATCTTAACAGGAACATGAAGCCTTGATAAAACAGCAGTTTTACTTTTCTCACAAAAACTT  3247

Query  406  -----  405
                 
Sbjct 3248  GTAAG  3252

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