Nucleotide Global Alignment

Description

Query:
ccsbBroad304_16008
Subject:
XR_001742284.1
Aligned Length:
4402
Identities:
1204
Gaps:
3198

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AAGTGCCTCAGCGGTAGGGGCCGGGGAAGTGTCTGTAGCGTCCCTCCCTCTCAACCACAATAACAGGCGGAGGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCGGCGTAGGTACTTTGAACTCAAGTAAACAAAAGGGAAGATTTTCTCGTTGATACTGGAGACTGCACAACAAT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGGGCCACGAAAGAAAAGTGTGAAAACATGTATCATGAATAATGAAATTCCAGAAGAAATGACAGCAGATGAAA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CAAAGGACTATATGAATCAACTTTCACATGAAGTACTTTGCCATATTTTTAGGTACCTCCCTCTGCAGGATATC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ATGTGTATGGAATGTCTTTCCCGGAAGCTAAAGGAAGCAGTGACCCTATATCTGCGAGTTGTGAGAGTTGTAGA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  TCTCTGTGCAGGGCGGTGGTGGGAATACATGCCAAGTGGCTTTACAGATGCCAGTTTTCTAACACTATTAAAGA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AGATGCCAGATGTTGAACAGCTATATGGCCTTCACCCTCGATACCTTGAGAGGCGAAGAGTAAGGGGCCATGAG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GCTTTTAGCATTCCAGGAGTCCTAGAAGCTTTGCAGGCATGCCCAAACTTAGTGGGTGTGGAAACTTCTCATTT  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  GGAGTTGGTAGAATCCATTTGGACATATATGCCCCATGTTCATATTTTGGGGAAATTTCGTAATCGTAATGGAG  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  CTTTTCCAATTCCTCCTGAAAATAAACTGAAAATTCCTATAGGAGCCAAAATTCAAACTTTACATTTAGTTGGG  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  GTGAATGTTCCTGAAATTCCTTGTATCCCAATGCTAAGGCACCTTTATATGAAGTGGGTAAGACTCACTAAACC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  ACAGCCATTTAAAGACTTCCTTTGTATCAGCTTAAGAACTTTCGTCATGAGGAACTGTGCAGGACCCACAAATT  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  CCTTGAAATATGTCCCTTTAGTAACAGGCTTAGCCTCTGCCCGAAACTTGGAACACTTAGAAATGGTTCGAGTT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CCTTTCCTTGGAGGTCTTATCCAACATGTTGTTGAAGACAGTTGGAGATCAGGTGGTTTTAGAAATTTGCACAC  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TATTGTTCTGGGAGCTTGCAAAAATGCTCTTGAAGTAGATCTTGGTTACCTCATCATTACTGCTGCCCGTAGGT  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TACATGAAGTTCGGATCCAGCCTTCCCTAACCAAAGATGGTGTCTTTTCTGCCCTAAAGATGGCAGAGTTGGAG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TTTCCCCAGTTTGAAACCCTTCATCTAGGATATGTAGATGAGTTTTTGCTACAGAGCAGAATGGCTAATGCGGA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  TCTGGTGAAGTATGGTTTGGCTGATGTGGTAGAAAATCCTGGTATCATCACTGATATAGGGATGAAAGCAGTCA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  ATGAAGTTTTTTCCTGTATCAAATATCTGGCAATTTACAATTGCCCTCATCTACACAACCCATACAATTGGATC  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  TCAGACCACTCAAGATGGACTCGATTGGTTGATATCAACCTAGTACGGTGCCATGCTTTGAAGCTGGACTCTTT  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  TGGCCAGTTTATTGAATTATTACCCAGCCTAGAGTTTATTTCACTGGATCAGATGTTTCGTGAACCACCCAAGG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  GTTGTGCTCGAGTTGGTCTGAGTGCAGGCACAGGAATTGGTGTTTCATCAGCTCTTGTTAGCAACCAGAACTCC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AACAATGACGATAATAATGCCCAGAATAACAATGCCAACATCCACGACAACAATCACCATCATCCAGATGACTC  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AGACGAGGAGAATGACTTTCGGCAAGATCTGCAGCCAGGAGAGCAGCAGTTTGCAGCTGACGCATTAAATGAGA  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  TGGAAGACATCGTCCAAGAAGATGGAGAGGTGGTGGCCGAGAGTGGAAATAATACTCCAGCTCACAGCCAGGCA  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  ATTATTCCTGTGGATGTTGATGAGGAACAAGCAGGACCCAGTGGTCTTCAGCGTGTAGTAAAACCAACCTCAAT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TACTGTTCATGATTCAGAGAGTGATGATGAAGAAGATAGTCTAGAACTCCAAGAAGTCTGGATTCCTAAGAACG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GTACTCGGCGTTACTCTGAACGTGAAGAAAAAACTGGAGAGTCAGTGCAGTCCAGAGAATTGTCAGTAAGTGGA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  AAAGGCAAGACTCCACTTCGAAAGAGGTACAACTCCCATCAGATGGGCCAGTCGAAGCAGTTTCCCCTCGAGGA  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  AAGCAGCTGTGAGAAAGGCTGTCAGGTCACCAGTGAGCAGATCAAAGCCGATATGAAAGCAGCTAGGGATATTC  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CTGAAAAGAAAAAAAACAAGGATGTTTATCCCAGCTGCAGCAGCACCACCGCCAGCACAGTGGGAAACTCCAGC  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TCACACAACACTGCTTCTCAAAGCCCCGACTTTGTAAGGACGGTGAACAGCGGCGGCTCTTCCGAGCCTAGCCC  2368

Query    1  ----------------------------------------------------------------ATGGAGGAGG  10
                                                                            ||||||||||
Sbjct 2369  TACAGAAGTGGATGTGTCCAGGCAGTGTGCCTGCTCCCCCGGTGGGTCAGAGGACTCTGAGGCCATGGAGGAGG  2442

Query   11  GAGATGCAGAGAGTTCTGTCTGCCCCAGATGCTGCTGTCACAGGCCCCAGGAATCCCAAAGGAGAACTAGCAGG  84
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  GAGATGCAGAGAGTTCTGTCTGCCCCAGATGCTGCTGTCACAGGCCCCAGGAATCCCAAAGGAGAACTAGCAGG  2516

Query   85  TGTTCTGATGAGGAACGTCCTTCAACCAGCCGAGCCTGTGTTGTGAATGGCCCGGATGGTACGAGATCCGCCTT  158
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  TGTTCTGATGAGGAACGTCCTTCAACCAGCCGAGCCTGTGTTGTGAATGGCCCGGATGGTACGAGATCCGCCTT  2590

Query  159  TTCCTTTAGGACTCTGCCACAAGGGGGGTCTTCAGGCCCAGCACATGATGAGAGGACTAATGGGAGTGGCTCTG  232
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591  TTCCTTTAGGACTCTGCCACAAGGGGGGTCTTCAGGCCCAGCACATGATGAGAGGACTAATGGGAGTGGCTCTG  2664

Query  233  GGGCTACAGGTGAGGACAGGAGGGGGAGCTCCCAGCCTGAGAGTTGTGACGTGCAGTCTAATGAAGACTACCCT  306
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665  GGGCTACAGGTGAGGACAGGAGGGGGAGCTCCCAGCCTGAGAGTTGTGACGTGCAGTCTAATGAAGACTACCCT  2738

Query  307  CGGAGGCCCCTAACCAGGGCCAGGAGCAGACTGTCCCATGTACTGCTGGTATCTGAGTCAGAAGTAGCCAAAAC  380
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739  CGGAGGCCCCTAACCAGGGCCAGGAGCAGACTGTCCCATGTACTGCTGGTATCTGAGTCAGAAGTAGCCAAAAC  2812

Query  381  AAAGCCACGTCACGCCATGAAACGGAAGCGGACAGCAGATAAATCCACTAGTACAAGTGATCCTGTGATCGAGG  454
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813  AAAGCCACGTCACGCCATGAAACGGAAGCGGACAGCAGATAAATCCACTAGTACAAGTGATCCTGTGATCGAGG  2886

Query  455  ATGACCATGTGCAGGTTCTTGTATTAAAATCCAAGAATCTTGTTGGAGTCACTATGACCAATTGTGGAATCACA  528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887  ATGACCATGTGCAGGTTCTTGTATTAAAATCCAAGAATCTTGTTGGAGTCACTATGACCAATTGTGGAATCACA  2960

Query  529  GATCTAGTGCTAAAAGACTGTCCAAAGATGATGTTCATCCATGCTACCAGGTGCAGGGTACTAAAACATTTAAA  602
            ||||||||||||||||||||||||||||||||||||||||||                                
Sbjct 2961  GATCTAGTGCTAAAAGACTGTCCAAAGATGATGTTCATCCAT--------------------------------  3002

Query  603  GGTAGAAAATGCACCAATTGTAAACCGATTTGACTATGCACAGTGCAAGAAACTGAACATGGATCAGGTACTAG  676
                                                      ||||||||||||||||||||||||||||||||
Sbjct 3003  ------------------------------------------GTGCAAGAAACTGAACATGGATCAGGTACTAG  3034

Query  677  ACCAGATACTAAGAATGCCACCCGAGAGAAACCGCATCATATACCTACGCCCAATGCAGCAGGTGGACACTCTA  750
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035  ACCAGATACTAAGAATGCCACCCGAGAGAAACCGCATCATATACCTACGCCCAATGCAGCAGGTGGACACTCTA  3108

Query  751  ACTTTGGAGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCCATGAATTCAGTAACCCTCC  824
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109  ACTTTGGAGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCCATGAATTCAGTAACCCTCC  3182

Query  825  CAATGTCCGGAATAAGGTGCGCATTCGCAGCTGGATGGACACTATAGCAAACATCAATCAAGAGCTCATTAAAT  898
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183  CAATGTCCGGAATAAGGTGCGCATTCGCAGCTGGATGGACACTATAGCAAACATCAATCAAGAGCTCATTAAAT  3256

Query  899  ATGAATTCTTCCCTGAAGCCACTCGAAGTGAAGAAGACTTAAAGAAATACCCCAAGTACCCCTGGGGGAGAGAA  972
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257  ATGAATTCTTCCCTGAAGCCACTCGAAGTGAAGAAGACTTAAAGAAATACCCCAAGTACCCCTGGGGGAGAGAA  3330

Query  973  ATCTATACTTTAGAAGGTGTTGTGGATGGAGCTCCATATTCCATGATTTCTGACTTCCCTTGGCTGAGGTCATT  1046
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331  ATCTATACTTTAGAAGGTGTTGTGGATGGAGCTCCATATTCCATGATTTCTGACTTCCCTTGGCTGAGGTCATT  3404

Query 1047  ACGAGCTGCAGAGCCCAACAGCTTCGCTCGATACGACTTTGAAGACGATGAAGAAAGCACTATCTATGCTCCTA  1120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405  ACGAGCTGCAGAGCCCAACAGCTTCGCTCGATACGACTTTGAAGACGATGAAGAAAGCACTATCTATGCTCCTA  3478

Query 1121  GAAGGAAAGGACAGCTGTCTGCAGACATCTGTATGGAAACAATAGGAGAGGAAATTTCAGAGATGCGTCAGATG  1194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479  GAAGGAAAGGACAGCTGTCTGCAGACATCTGTATGGAAACAATAGGAGAGGAAATTTCAGAGATGCGTCAGATG  3552

Query 1195  AAGAAGGGTGTATTTCAGCGAGTAGTGGCAATTTTTATCCACTATTGTGATGTCAATGGAGAGCCAGTTGAAGA  1268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3553  AAGAAGGGTGTATTTCAGCGAGTAGTGGCAATTTTTATCCACTATTGTGATGTCAATGGAGAGCCAGTTGAAGA  3626

Query 1269  TGACTACATT----------------------------------------------------------------  1278
            ||||||||||                                                                
Sbjct 3627  TGACTACATTTAATTGGTCCCTCCTCCTTTCCAGCTATTTTGTCAGAAAGCAAGTAGGGCCATCCAGCTGCCAG  3700

Query 1279  --------------------------------------------------------------------------  1278
                                                                                      
Sbjct 3701  AGTGCTCCACAGGGACTTGAGGCATGCAGTTGGGAGGTCCTGGCTCGGTTTGCTATATAGGGAATATATAAGGA  3774

Query 1279  --------------------------------------------------------------------------  1278
                                                                                      
Sbjct 3775  ACATCGAAATTGTATACAAAGATTTGTACATAAAAAATATACAAAGACGCTTCCTAAAGTACCAACTTTATATC  3848

Query 1279  --------------------------------------------------------------------------  1278
                                                                                      
Sbjct 3849  ATATGTTTATACAATTTAATTTAAAAATTCATTTTAAGGAAGACAGATAATTTGAAAGACTTTTGTTTTTCTTG  3922

Query 1279  --------------------------------------------------------------------------  1278
                                                                                      
Sbjct 3923  ACTTAATTCATGAAGTATCATTTTTTGACTGAGTCTCCATTTACTTCATTCTTAATGATTATTGTCATCCCTTT  3996

Query 1279  --------------------------------------------------------------------------  1278
                                                                                      
Sbjct 3997  AAATCTGTGCCTTTTTCTTCTTGAGCGAAGCTGTTTGAGTAAACCTGTTGAAGAGTGTTTGTGTCTTTTGTGCT  4070

Query 1279  --------------------------------------------------------------------------  1278
                                                                                      
Sbjct 4071  TTTTTGTTGTTATTAAAACACCAACTAAACCTTATAGTCAAGACAAGGCTCTATGTTTCTGTACAAAGCTGTAG  4144

Query 1279  --------------------------------------------------------------------------  1278
                                                                                      
Sbjct 4145  TTCTTTCTTAGTATTATAGTTGCCATGTTTCTTAAAATCAAGTAAAAAGACTTATGAGCTTAAAAAAAAGTGAG  4218

Query 1279  --------------------------------------------------------------------------  1278
                                                                                      
Sbjct 4219  TTTGAGAGGGAAATGGAAAAGTTTCCAGAGTATTTCTAGTAATTTATTTCCACATTGAATTGTGTATATGCTTT  4292

Query 1279  ------------------------------------  1278
                                                
Sbjct 4293  ATCTTGAATATAAAATAAAAGTTTATTAAAAACTTT  4328

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.