Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_16008
- Subject:
- XR_001742284.1
- Aligned Length:
- 4402
- Identities:
- 1204
- Gaps:
- 3198
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAGTGCCTCAGCGGTAGGGGCCGGGGAAGTGTCTGTAGCGTCCCTCCCTCTCAACCACAATAACAGGCGGAGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCGGCGTAGGTACTTTGAACTCAAGTAAACAAAAGGGAAGATTTTCTCGTTGATACTGGAGACTGCACAACAAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGGGCCACGAAAGAAAAGTGTGAAAACATGTATCATGAATAATGAAATTCCAGAAGAAATGACAGCAGATGAAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CAAAGGACTATATGAATCAACTTTCACATGAAGTACTTTGCCATATTTTTAGGTACCTCCCTCTGCAGGATATC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ATGTGTATGGAATGTCTTTCCCGGAAGCTAAAGGAAGCAGTGACCCTATATCTGCGAGTTGTGAGAGTTGTAGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TCTCTGTGCAGGGCGGTGGTGGGAATACATGCCAAGTGGCTTTACAGATGCCAGTTTTCTAACACTATTAAAGA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AGATGCCAGATGTTGAACAGCTATATGGCCTTCACCCTCGATACCTTGAGAGGCGAAGAGTAAGGGGCCATGAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCTTTTAGCATTCCAGGAGTCCTAGAAGCTTTGCAGGCATGCCCAAACTTAGTGGGTGTGGAAACTTCTCATTT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GGAGTTGGTAGAATCCATTTGGACATATATGCCCCATGTTCATATTTTGGGGAAATTTCGTAATCGTAATGGAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CTTTTCCAATTCCTCCTGAAAATAAACTGAAAATTCCTATAGGAGCCAAAATTCAAACTTTACATTTAGTTGGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GTGAATGTTCCTGAAATTCCTTGTATCCCAATGCTAAGGCACCTTTATATGAAGTGGGTAAGACTCACTAAACC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ACAGCCATTTAAAGACTTCCTTTGTATCAGCTTAAGAACTTTCGTCATGAGGAACTGTGCAGGACCCACAAATT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCTTGAAATATGTCCCTTTAGTAACAGGCTTAGCCTCTGCCCGAAACTTGGAACACTTAGAAATGGTTCGAGTT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CCTTTCCTTGGAGGTCTTATCCAACATGTTGTTGAAGACAGTTGGAGATCAGGTGGTTTTAGAAATTTGCACAC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TATTGTTCTGGGAGCTTGCAAAAATGCTCTTGAAGTAGATCTTGGTTACCTCATCATTACTGCTGCCCGTAGGT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TACATGAAGTTCGGATCCAGCCTTCCCTAACCAAAGATGGTGTCTTTTCTGCCCTAAAGATGGCAGAGTTGGAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TTTCCCCAGTTTGAAACCCTTCATCTAGGATATGTAGATGAGTTTTTGCTACAGAGCAGAATGGCTAATGCGGA 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TCTGGTGAAGTATGGTTTGGCTGATGTGGTAGAAAATCCTGGTATCATCACTGATATAGGGATGAAAGCAGTCA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 ATGAAGTTTTTTCCTGTATCAAATATCTGGCAATTTACAATTGCCCTCATCTACACAACCCATACAATTGGATC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCAGACCACTCAAGATGGACTCGATTGGTTGATATCAACCTAGTACGGTGCCATGCTTTGAAGCTGGACTCTTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 TGGCCAGTTTATTGAATTATTACCCAGCCTAGAGTTTATTTCACTGGATCAGATGTTTCGTGAACCACCCAAGG 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GTTGTGCTCGAGTTGGTCTGAGTGCAGGCACAGGAATTGGTGTTTCATCAGCTCTTGTTAGCAACCAGAACTCC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AACAATGACGATAATAATGCCCAGAATAACAATGCCAACATCCACGACAACAATCACCATCATCCAGATGACTC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGACGAGGAGAATGACTTTCGGCAAGATCTGCAGCCAGGAGAGCAGCAGTTTGCAGCTGACGCATTAAATGAGA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 TGGAAGACATCGTCCAAGAAGATGGAGAGGTGGTGGCCGAGAGTGGAAATAATACTCCAGCTCACAGCCAGGCA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ATTATTCCTGTGGATGTTGATGAGGAACAAGCAGGACCCAGTGGTCTTCAGCGTGTAGTAAAACCAACCTCAAT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TACTGTTCATGATTCAGAGAGTGATGATGAAGAAGATAGTCTAGAACTCCAAGAAGTCTGGATTCCTAAGAACG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GTACTCGGCGTTACTCTGAACGTGAAGAAAAAACTGGAGAGTCAGTGCAGTCCAGAGAATTGTCAGTAAGTGGA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AAAGGCAAGACTCCACTTCGAAAGAGGTACAACTCCCATCAGATGGGCCAGTCGAAGCAGTTTCCCCTCGAGGA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AAGCAGCTGTGAGAAAGGCTGTCAGGTCACCAGTGAGCAGATCAAAGCCGATATGAAAGCAGCTAGGGATATTC 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 CTGAAAAGAAAAAAAACAAGGATGTTTATCCCAGCTGCAGCAGCACCACCGCCAGCACAGTGGGAAACTCCAGC 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 TCACACAACACTGCTTCTCAAAGCCCCGACTTTGTAAGGACGGTGAACAGCGGCGGCTCTTCCGAGCCTAGCCC 2368
Query 1 ----------------------------------------------------------------ATGGAGGAGG 10
||||||||||
Sbjct 2369 TACAGAAGTGGATGTGTCCAGGCAGTGTGCCTGCTCCCCCGGTGGGTCAGAGGACTCTGAGGCCATGGAGGAGG 2442
Query 11 GAGATGCAGAGAGTTCTGTCTGCCCCAGATGCTGCTGTCACAGGCCCCAGGAATCCCAAAGGAGAACTAGCAGG 84
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 GAGATGCAGAGAGTTCTGTCTGCCCCAGATGCTGCTGTCACAGGCCCCAGGAATCCCAAAGGAGAACTAGCAGG 2516
Query 85 TGTTCTGATGAGGAACGTCCTTCAACCAGCCGAGCCTGTGTTGTGAATGGCCCGGATGGTACGAGATCCGCCTT 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 TGTTCTGATGAGGAACGTCCTTCAACCAGCCGAGCCTGTGTTGTGAATGGCCCGGATGGTACGAGATCCGCCTT 2590
Query 159 TTCCTTTAGGACTCTGCCACAAGGGGGGTCTTCAGGCCCAGCACATGATGAGAGGACTAATGGGAGTGGCTCTG 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 TTCCTTTAGGACTCTGCCACAAGGGGGGTCTTCAGGCCCAGCACATGATGAGAGGACTAATGGGAGTGGCTCTG 2664
Query 233 GGGCTACAGGTGAGGACAGGAGGGGGAGCTCCCAGCCTGAGAGTTGTGACGTGCAGTCTAATGAAGACTACCCT 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 GGGCTACAGGTGAGGACAGGAGGGGGAGCTCCCAGCCTGAGAGTTGTGACGTGCAGTCTAATGAAGACTACCCT 2738
Query 307 CGGAGGCCCCTAACCAGGGCCAGGAGCAGACTGTCCCATGTACTGCTGGTATCTGAGTCAGAAGTAGCCAAAAC 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 CGGAGGCCCCTAACCAGGGCCAGGAGCAGACTGTCCCATGTACTGCTGGTATCTGAGTCAGAAGTAGCCAAAAC 2812
Query 381 AAAGCCACGTCACGCCATGAAACGGAAGCGGACAGCAGATAAATCCACTAGTACAAGTGATCCTGTGATCGAGG 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813 AAAGCCACGTCACGCCATGAAACGGAAGCGGACAGCAGATAAATCCACTAGTACAAGTGATCCTGTGATCGAGG 2886
Query 455 ATGACCATGTGCAGGTTCTTGTATTAAAATCCAAGAATCTTGTTGGAGTCACTATGACCAATTGTGGAATCACA 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887 ATGACCATGTGCAGGTTCTTGTATTAAAATCCAAGAATCTTGTTGGAGTCACTATGACCAATTGTGGAATCACA 2960
Query 529 GATCTAGTGCTAAAAGACTGTCCAAAGATGATGTTCATCCATGCTACCAGGTGCAGGGTACTAAAACATTTAAA 602
||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961 GATCTAGTGCTAAAAGACTGTCCAAAGATGATGTTCATCCAT-------------------------------- 3002
Query 603 GGTAGAAAATGCACCAATTGTAAACCGATTTGACTATGCACAGTGCAAGAAACTGAACATGGATCAGGTACTAG 676
||||||||||||||||||||||||||||||||
Sbjct 3003 ------------------------------------------GTGCAAGAAACTGAACATGGATCAGGTACTAG 3034
Query 677 ACCAGATACTAAGAATGCCACCCGAGAGAAACCGCATCATATACCTACGCCCAATGCAGCAGGTGGACACTCTA 750
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035 ACCAGATACTAAGAATGCCACCCGAGAGAAACCGCATCATATACCTACGCCCAATGCAGCAGGTGGACACTCTA 3108
Query 751 ACTTTGGAGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCCATGAATTCAGTAACCCTCC 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109 ACTTTGGAGCAGAAGCTATTTAGTGGTCCCTACCCCTATCACATCTGTATTATCCATGAATTCAGTAACCCTCC 3182
Query 825 CAATGTCCGGAATAAGGTGCGCATTCGCAGCTGGATGGACACTATAGCAAACATCAATCAAGAGCTCATTAAAT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3183 CAATGTCCGGAATAAGGTGCGCATTCGCAGCTGGATGGACACTATAGCAAACATCAATCAAGAGCTCATTAAAT 3256
Query 899 ATGAATTCTTCCCTGAAGCCACTCGAAGTGAAGAAGACTTAAAGAAATACCCCAAGTACCCCTGGGGGAGAGAA 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3257 ATGAATTCTTCCCTGAAGCCACTCGAAGTGAAGAAGACTTAAAGAAATACCCCAAGTACCCCTGGGGGAGAGAA 3330
Query 973 ATCTATACTTTAGAAGGTGTTGTGGATGGAGCTCCATATTCCATGATTTCTGACTTCCCTTGGCTGAGGTCATT 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3331 ATCTATACTTTAGAAGGTGTTGTGGATGGAGCTCCATATTCCATGATTTCTGACTTCCCTTGGCTGAGGTCATT 3404
Query 1047 ACGAGCTGCAGAGCCCAACAGCTTCGCTCGATACGACTTTGAAGACGATGAAGAAAGCACTATCTATGCTCCTA 1120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3405 ACGAGCTGCAGAGCCCAACAGCTTCGCTCGATACGACTTTGAAGACGATGAAGAAAGCACTATCTATGCTCCTA 3478
Query 1121 GAAGGAAAGGACAGCTGTCTGCAGACATCTGTATGGAAACAATAGGAGAGGAAATTTCAGAGATGCGTCAGATG 1194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3479 GAAGGAAAGGACAGCTGTCTGCAGACATCTGTATGGAAACAATAGGAGAGGAAATTTCAGAGATGCGTCAGATG 3552
Query 1195 AAGAAGGGTGTATTTCAGCGAGTAGTGGCAATTTTTATCCACTATTGTGATGTCAATGGAGAGCCAGTTGAAGA 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3553 AAGAAGGGTGTATTTCAGCGAGTAGTGGCAATTTTTATCCACTATTGTGATGTCAATGGAGAGCCAGTTGAAGA 3626
Query 1269 TGACTACATT---------------------------------------------------------------- 1278
||||||||||
Sbjct 3627 TGACTACATTTAATTGGTCCCTCCTCCTTTCCAGCTATTTTGTCAGAAAGCAAGTAGGGCCATCCAGCTGCCAG 3700
Query 1279 -------------------------------------------------------------------------- 1278
Sbjct 3701 AGTGCTCCACAGGGACTTGAGGCATGCAGTTGGGAGGTCCTGGCTCGGTTTGCTATATAGGGAATATATAAGGA 3774
Query 1279 -------------------------------------------------------------------------- 1278
Sbjct 3775 ACATCGAAATTGTATACAAAGATTTGTACATAAAAAATATACAAAGACGCTTCCTAAAGTACCAACTTTATATC 3848
Query 1279 -------------------------------------------------------------------------- 1278
Sbjct 3849 ATATGTTTATACAATTTAATTTAAAAATTCATTTTAAGGAAGACAGATAATTTGAAAGACTTTTGTTTTTCTTG 3922
Query 1279 -------------------------------------------------------------------------- 1278
Sbjct 3923 ACTTAATTCATGAAGTATCATTTTTTGACTGAGTCTCCATTTACTTCATTCTTAATGATTATTGTCATCCCTTT 3996
Query 1279 -------------------------------------------------------------------------- 1278
Sbjct 3997 AAATCTGTGCCTTTTTCTTCTTGAGCGAAGCTGTTTGAGTAAACCTGTTGAAGAGTGTTTGTGTCTTTTGTGCT 4070
Query 1279 -------------------------------------------------------------------------- 1278
Sbjct 4071 TTTTTGTTGTTATTAAAACACCAACTAAACCTTATAGTCAAGACAAGGCTCTATGTTTCTGTACAAAGCTGTAG 4144
Query 1279 -------------------------------------------------------------------------- 1278
Sbjct 4145 TTCTTTCTTAGTATTATAGTTGCCATGTTTCTTAAAATCAAGTAAAAAGACTTATGAGCTTAAAAAAAAGTGAG 4218
Query 1279 -------------------------------------------------------------------------- 1278
Sbjct 4219 TTTGAGAGGGAAATGGAAAAGTTTCCAGAGTATTTCTAGTAATTTATTTCCACATTGAATTGTGTATATGCTTT 4292
Query 1279 ------------------------------------ 1278
Sbjct 4293 ATCTTGAATATAAAATAAAAGTTTATTAAAAACTTT 4328
