Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_16065
- Subject:
- NR_038354.2
- Aligned Length:
- 2185
- Identities:
- 549
- Gaps:
- 1608
Alignment
Query 1 ---------------------------ATGGCGACGGAGGGAGGAGGGAAGGAGATGAACGAGATTAAGACCCA 47
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGGGCAGGATGAACGCTGCTTTCCAAGATGGCGACGGAGGGAGGAGGGAAGGAGATGAACGAGATTAAGACCCA 74
Query 48 ATTCACCACCCGGGAAGGTCTGTACAAGCTGCTGCCGCACTCGGAGTACAGCCGGCCCAACCGGGTGCCCTTCA 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 ATTCACCACCCGGGAAGGTCTGTACAAGCTGCTGCCGCACTCGGAGTACAGCCGGCCCAACCGGGTGCCCTTCA 148
Query 122 ACTCGCAGGGATCCAACCCTGTCCGCGTCTCCTTCGTAAACCTCAACGACCAGTCTGGCAACGGCGACCGCCTC 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 ACTCGCAGGGATCCAACCCTGTCCGCGTCTCCTTCGTAAACCTCAACGACCAGTCTGGCAACGGCGACCGCCTC 222
Query 196 TGCTTCAATGTGGGCCGGGAGCTGTACTTCTATATCTACAAGGGGGTCCGCA---------------------- 247
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TGCTTCAATGTGGGCCGGGAGCTGTACTTCTATATCTACAAGGGGGTCCGCAAGACAATCCCATGAGGTTGGTA 296
Query 248 ------------------------------AGGCTGCTGACTTGAGTAAACCAATAGATAAAAGGATATACAAA 291
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GAACAGAGATTCTCATCTCCGTTTTAACTGAGGCTGCTGACTTGAGTAAACCAATAGATAAAAGGATATACAAA 370
Query 292 GGAACACAGCCTACTTGTCATGACTTCAACCACCTAACAGCCACAGCAGAAAGTGTCTCTCTCCTAGTGGGCTT 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGAACACAGCCTACTTGTCATGACTTCAACCACCTAACAGCCACAGCAGAAAGTGTCTCTCTCCTAGTGGGCTT 444
Query 366 TTCCGCAGGCCAAGTCCAGCTTATAGACCCAATCAAAAAAGAAACTAGCAAACTTTTTAATGAGGA------AA 433
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 445 TTCCGCAGGCCAAGTCCAGCTTATAGACCCAATCAAAAAAGAAACTAGCAAACTTTTTAATGAGGAAATGGCAA 518
Query 434 ACTCTT-------GTCAGC-------------------------ACTT-------GTGGAAGGTG--------G 460
..|||| ||.||| |||| |||| ||.|| |
Sbjct 519 GTTCTTAGCGTGCGTGAGCCAGGACGGGTTTCTGCGGGTGTTCAACTTTGACTCAGTGG-AGCTGCACGGTACG 591
Query 461 AT----------------------------------TGGA------ATGAAGAAAG-ACAGAATGA-AGGT--- 489
|| |||| ||| |.||| |||...||| ||||
Sbjct 592 ATGAAAAGCTACTTTGGGGGCTTGCTGTGTGTGTGCTGGAGCCCGGATG--GCAAGTACATCGTGACAGGTGGG 663
Query 490 -AGCAAGAC-------CAGTGAGG--------AGGCT--CTAGTAACTGTCCAG------CCGGC--------- 530
||.|.||| ||||..|| ||.|| |.||||| |..|||| |.|||
Sbjct 664 GAGGACGACTTGGTGACAGTCTGGTCCTTTGTAGACTGCCGAGTAA-TAGCCAGAGGCCACGGGCACAAGTCCT 736
Query 531 ---------------------------AGAGCACTTCTGCAG--GCAGGAG-----------------GACAG- 557
|.|.||||..||.|| |.|||.| |.|||
Sbjct 737 GGGTCAGTGTTGTAGCGTTTGACCCTTATACCACTAGTGTAGAAGAAGGTGACCCTATGGAGTTTAGTGGCAGC 810
Query 558 GATGCAAGGTGTTCTCCAAGACC----------------AGAAC------------------------------ 585
|||| |||..| ||||||||| |||.|
Sbjct 811 GATG--AGGACT--TCCAAGACCTTCTTCATTTTGGCAGAGATCGAGCAAATAGTACACAGTCCAGGCTCTCCA 880
Query 586 -------------------------------------------------------------------------- 585
Sbjct 881 AACGGAACTCTACAGACAGCCGCCCCGTAAGTGTCACGTATCGGTTTGGTTCCGTGGGCCAGGACACACAGCTC 954
Query 586 -------------------------------------------------------------------------- 585
Sbjct 955 TGTTTATGGGACCTTACAGAAGATATCCTTTTCCCTCACCAACCCCTCTCAAGAGCAAGGACACACACAAATGT 1028
Query 586 -------------------------------------------------------------------------- 585
Sbjct 1029 CATGAATGCCACGAGTCCTCCTGCTGGAAGCAATGGGAACAGTGTTACAACACCCGGGAACTCTGTGCCGCCTC 1102
Query 586 -------------------------------------------------------------------------- 585
Sbjct 1103 CTCTGCCACGGTCCAACAGCCTTCCACATTCAGCAGTCTCAAATGCTGGCAGCAAAAGCAGTGTCATGGACGGG 1176
Query 586 -------------------------------------------------------------------------- 585
Sbjct 1177 GCCATTGCTTCTGGGGTCAGCAAATTTGCAACACTTTCACTACATGACCGGAAGGAGAGGCACCACGAGAAAGA 1250
Query 586 -------------------------------------------------------------------------- 585
Sbjct 1251 TCACAAGCGAAATCATAGCATGGGACACATTTCTAGCAAGAGCAGTGACAAACTGAATCTAGTTACCAAAACCA 1324
Query 586 -------------------------------------------------------------------------- 585
Sbjct 1325 AAACGGACCCTGCTAAAACTCTGGGAACGCCCCTGTGTCCTCGAATGGAAGATGTTCCCTTGTTAGAGCCGCTG 1398
Query 586 -------------------------------------------------------------------------- 585
Sbjct 1399 ATATGTAAAAAGATAGCACATGAGAGACTGACTGTACTAATATTTCTTGAAGACTGTATAGTCACTGCTTGTCA 1472
Query 586 -------------------------------------------------------------------------- 585
Sbjct 1473 GGAGGGATTTATTTGCACATGGGGAAGGCCTGGTAAAGTGGTAAGTTTTAATCCTTAATGCTGCACCAGATCTA 1546
Query 586 -------------------------------------------------------------------------- 585
Sbjct 1547 GAACTTGAATAGGTAGTGACTTTTTTCTTTTTCGTGGGAGGGGTGGGGTGTACAATGAATGTGAATGACACTTC 1620
Query 586 -------------------------------------------------------------------------- 585
Sbjct 1621 TTATTCTTAATGTAAATCTCAATGCATCAGAGCCATAATTTTGGATACTGCATGCCATGTAATTCTGAATCATT 1694
Query 586 -------------------------------------------------------------------------- 585
Sbjct 1695 TGATAATTTACCTTAGAGCATTTAAAAAAATATAATCAAACTAATTGCCAGCCAAGTCAGTCATCCTCCTGGGA 1768
Query 586 -------------------------------------------------------------------------- 585
Sbjct 1769 GTATATAGAGTCCCAAGGTTAGCGCTCCTGTATTAGACTATTTCAATTTTAGGAAAATCATGACCATGTGGGGA 1842
Query 586 -------------------------------------------------------------------------- 585
Sbjct 1843 AACAATGACTTTAAAATGCTGAAATTAAAATTTATGCTTTAACTGGAATATTTTTTGCTTAACTACTCAATTAG 1916
Query 586 -------------------------------------------------------------------------- 585
Sbjct 1917 AATATTGTACACCTGATCAATGTGTGTTCAGCACAGATGGCCATGAATTGTCATTTATAGTCCAATTTTTTATC 1990
Query 586 -------------------------------------------------------------------------- 585
Sbjct 1991 TTAATCATAAAATGTTTAGGAATCTATGAAATTTAACTTTAGGAACAAAACGTTTAGCAGGGTTGATTGATATT 2064
Query 586 -------------------------------------------------------------------------- 585
Sbjct 2065 ATTTTTACATTGTTCTGGCAATCCACAGAAAGAGAAGAGCCTTAATTTTTAAAACCCATTTTAGTCATTTTATG 2138
Query 586 --------------------------------------- 585
Sbjct 2139 ACAATTAAAGTTGTTTAATAAACATCTTTTTTCAAAGAA 2177
