Nucleotide Global Alignment

Description

Query:
ccsbBroad304_16073
Subject:
XR_001741987.1
Aligned Length:
3449
Identities:
1802
Gaps:
1603

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGTCGGCGCTGCGAAGTGGAGGCGCTGCGAGCGGAGCCGCGCGGAGGGCGCGACCGGCTGGTCCGGGCAGCGTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GGTTTGCCGCCTTCGGGGCTCCAGTCCGCGCGCCAGGGCTCGAGCAGTACCGCGGGCCCCTCAGGTGGGCCTCG  148

Query    1  ----------------------------------------------ATGGCGCTGCGCGCCCGGGCGCTGTACG  28
                                                          ||||||||||||||||||||||||||||
Sbjct  149  GCTCGGGACGCCGGGAGTCGGGACCGCCAGTCGGGGCGCCGGGACCATGGCGCTGCGCGCCCGGGCGCTGTACG  222

Query   29  ACTTCAGGTCGGAGAACCCAGGAGAGATCTCGCTGCGAGAGCACGAGGTGCTGAGCCTGTGCAGCGAGCAGGAC  102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  ACTTCAGGTCGGAGAACCCAGGAGAGATCTCGCTGCGAGAGCACGAGGTGCTGAGCCTGTGCAGCGAGCAGGAC  296

Query  103  ATCGAGGGCTGGCTCGAGGGGGTCAACAGCCGCGGCGACCGCGGCCTCTTCCCGGCCTCCTATGTGCAGGTGAT  176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ATCGAGGGCTGGCTCGAGGGGGTCAACAGCCGCGGCGACCGCGGCCTCTTCCCGGCCTCCTATGTGCAGGTGAT  370

Query  177  CCGCGCCCCCGAGCCTGGCCCGGCGGGAGACGGCGGCCCGGGCGCCCCGGCCCGCTACGCCAATGTGCCCCCCG  250
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CCGCGCCCCCGAGCCTGGCCCGGCGGGAGACGGCGGCCCGGGCGCCCCGGCCCGCTACGCCAATGTGCCCCCCG  444

Query  251  GGGGCTTCGAGCCCCTGCCCGTCGCGCCCCCCGCCTCCTTCAAGCCGCCGCCTGACGCCTTCCAGGCGCTGCTG  324
            |||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GGGGCTTCGAGCCCCTGCCTGTCGCGCCCCCCGCCTCCTTCAAGCCGCCGCCTGACGCCTTCCAGGCGCTGCTG  518

Query  325  CAGCCACAGCAGGCGCCGCCTCCGAGCACCTTCCAGCCGCCCGGCGCGGGCTTCCCGTACGGCGGGGGCGCCCT  398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CAGCCACAGCAGGCGCCGCCTCCGAGCACCTTCCAGCCGCCCGGCGCGGGCTTCCCGTACGGCGGGGGCGCCCT  592

Query  399  GCAGCCGTCGCCTCAGCAGCTCTACGGCGGCTACCAGGCCAGCCAAGGCAGCGATGATGACTGGGACGACGAGT  472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GCAGCCGTCGCCTCAGCAGCTCTACGGCGGCTACCAGGCCAGCCAAGGCAGCGATGATGACTGGGACGACGAGT  666

Query  473  GGGACGACAGCTCCACGGTGGCGGACGAGCCGGGCGCTCTGGGCAGCGGAGCATACCCGGACCTCGACGGCTCG  546
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GGGACGACAGCTCCACGGTGGCGGACGAGCCGGGCGCTCTGGGCAGCGGAGCATACCCGGACCTCGACGGCTCG  740

Query  547  TCTTCGGCGGGTGTGGGCGCAGCCGGCCGCTACCGCCTGTCCACGCGCTCCGACCTGTCCCTGGGCTCCCGCGG  620
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct  741  TCTTCGGCGGGTGTGGGCGCAGCCGGCCGCTACCGCCTGTCCACGCGCTCCGACCTGTCCCTGGGTTCCCGCGG  814

Query  621  CGGCTCGGTCCCCCCGCAGCACCACCCGTCGGGGCCCAAGAGCTCGGCCACCGTGAGCCGCAACCTCAATCGCT  694
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CGGCTCGGTCCCCCCGCAGCACCACCCGTCGGGGCCCAAGAGCTCGGCCACCGTGAGCCGCAACCTCAATCGCT  888

Query  695  TCTCCACCTTCGTCAAGTCCGGCGGGGAGGCCTTCGTGCTGGGGGAGGCGTCAGGCTTCGTGAAGGACGGGGAC  768
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  TCTCCACCTTCGTCAAGTCCGGCGGGGAGGCCTTCGTGCTGGGGGAGGCGTCAGGCTTCGTGAAGGACGGGGAC  962

Query  769  AAGCTGTGCGTGGTGCTGGGGCCCTATGGCCCCGAGTGGCAGGAGAACCCCTACCCGTTCCAGTGCACCATCGA  842
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  AAGCTGTGCGTGGTGCTGGGGCCCTATGGCCCCGAGTGGCAGGAGAACCCCTACCCGTTCCAGTGCACCATCGA  1036

Query  843  CGACCCCACCAAGCAGACCAAGTTCAAGGGCATGAAGAGCTACATCTCCTACAAGCTGGTGCCCACGCACACGC  916
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CGACCCCACCAAGCAGACCAAGTTCAAGGGCATGAAGAGCTACATCTCCTACAAGCTGGTGCCCACGCACACGC  1110

Query  917  AGGTGCCGGTGCATCGGCGCTACAAGCACTTCGACTGGCTGTACGCGCGCCTGGCGGAGAAGTTCCCGGTCATC  990
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  AGGTGCCGGTGCATCGGCGCTACAAGCACTTCGACTGGCTGTACGCGCGCCTGGCGGAGAAGTTCCCGGTCATC  1184

Query  991  TCCGTGCCCCACCTGCCCGAGAAGCAGGCCACCGGCCGCTTCGAGGAGGACTTCATCTCTAAGCGCAGGAAGGG  1064
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TCCGTGCCCCACCTGCCCGAGAAGCAGGCCACCGGCCGCTTCGAGGAGGACTTCATCTCTAAGCGCAGGAAGGG  1258

Query 1065  CCTGATCTGGTGGATGAACCACATGGCCAGCCACCCAGTGCTGGCGCAGTGCGACGTCTTCCAGCACTTCCTGA  1138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CCTGATCTGGTGGATGAACCACATGGCCAGCCACCCAGTGCTGGCGCAGTGCGACGTCTTCCAGCACTTCCTGA  1332

Query 1139  CGTGCCCCAGCAGCACCGACGAGAAAGCCTGGAAGCAGGGCAAGAGGAAGGCCGAGAAGGACGAGATGGTGGGC  1212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  CGTGCCCCAGCAGCACCGACGAGAAAGCCTGGAAGCAGGGCAAGAGGAAGGCCGAGAAGGACGAGATGGTGGGC  1406

Query 1213  GCCAACTTCTTCCTGACCCTTAGCACGCCCCCCGCCGCTGCCCTTGACCTGCAGGAGGTGGAGAGCAAGATCGA  1286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GCCAACTTCTTCCTGACCCTTAGCACGCCCCCCGCCGCTGCCCTTGACCTGCAGGAGGTGGAGAGCAAGATCGA  1480

Query 1287  CGGCTTCAAGTGCTTCACCAAGAAGATGGACGACAGCGCGCTGCAGCTCAACCACACGGCCAACGAGTTCGCGC  1360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  CGGCTTCAAGTGCTTCACCAAGAAGATGGACGACAGCGCGCTGCAGCTCAACCACACGGCCAACGAGTTCGCGC  1554

Query 1361  GCAAGCAGGTGACCGGCTTCAAAAAGGAGTATCAGAAGGTGGGCCAGTCCTTCCGCGGCCTCAGCCAGGCCTTT  1434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GCAAGCAGGTGACCGGCTTCAAAAAGGAGTATCAGAAGGTGGGCCAGTCCTTCCGCGGCCTCAGCCAGGCCTTT  1628

Query 1435  GAGCTGGACCAGCAGGCCTTCTCGGTGGGCCTGAACCAGGCTATCGCCTTCACCGGAGATGCCTATGACGCCAT  1508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GAGCTGGACCAGCAGGCCTTCTCGGTGGGCCTGAACCAGGCTATCGCCTTCACCGGAGATGCCTATGACGCCAT  1702

Query 1509  TGGCGAGCTCTTCGCGGAGCAGCCCAGGCAGGACCTGGATCCCGTCATGGACCTATTAGCGCTGTATCAGGGGC  1582
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  TGGCGAGCTCTTCGCGGAGCAGCCCAGGCAGGACCTGGATCCCGTCATGGACCTATTAGCGCTGTATCAGGGGC  1776

Query 1583  ATCTGGCTAACTTCCCGGACATCATCCACGTTCAGAAAGG--AG---CTC-------TTACCAAA------GTC  1638
            ||||||||||||||||||||||||||||||||||||||||  ||   |||       |||||.||      |||
Sbjct 1777  ATCTGGCTAACTTCCCGGACATCATCCACGTTCAGAAAGGTTAGTCCCTCTAAACATTTACCCAACTTTTGGTC  1850

Query 1639  ---------AAGGAGA-------------GTAGGCGACACGTGGA----GGAAGGGAAGAT--GGAG----GTG  1680
                     |.|.|||             ||.|||.|   .||||    .||||.|.|..|  ||||    |.|
Sbjct 1851  TTTATGATAATGAAGACATCTGACCTCTGGTTGGCCA---TTGGATTGTTGAAGAGGACTTCGGGAGACCAGAG  1921

Query 1681  -CAGA------------------AGGCTG-------AC----GGCATTCA------------------------  1700
             ||||                  ||.|||       ||    ||| ||||                        
Sbjct 1922  ACAGATGTCTCGCTATGTTGCCCAGCCTGGTCTCCAACTCCTGGC-TTCAAGCAATTCCTCCTGCCTCGGCCTC  1994

Query 1701  -----------GGATCGCTGTAA-----CACTAT-----TTCTTTTGCCA------------------------  1729
                       ||||..|.|.||     |||.||     ||||    |||                        
Sbjct 1995  TCCAAGTGCTGGGATTACAGGAATTAGCCACCATGCTCATTCT----CCATTGACTAATCTGTTAATAGTCCTA  2064

Query 1730  -CTTTGGCTGAAATTC-ACCA---------------------------CTTCCATCAAATTCGAG--TGAGAGA  1772
             ||||||.| ||..|| ||||                           ||      |||||.|.|  ||.|||.
Sbjct 2065  TCTTTGGGT-AAGGTCAACCATGGAGAAAATGCTGGAAGAGGTAAGGTCT------AAATTGGGGGATGCGAGG  2131

Query 1773  CTTTAAATCACAGATG------------CAGCATTTC----TTACA----------------ACAACAAA---T  1811
            .||   ||    ||||            |||||||.|    |.|||                .||.|.||   |
Sbjct 2132  ATT---AT----GATGGAGGAAGGGGAACAGCATTCCAGGGTGACATAGTTTGGTTGTGTCCCCATCCAAATCT  2198

Query 1812  AATATT---------TTTCCAAAA-----------------AGTTACCCAGAAGTTGGAA---GAA--------  1848
            .||.||         ||||||.||                 ||..||||||.||..||.|   |||        
Sbjct 2199  CATCTTGAATTGTAGTTTCCATAATCCCCACATGTCATGGGAGGGACCCAGTAGGAGGTAATTGAATCACAGGG  2272

Query 1849  -----------------GCTCTTCACAAATATGATAGT--GTT-------------------------------  1872
                             |||.|||.|    ||||||||  |||                               
Sbjct 2273  GCCATTACCCACATGCTGCTGTTCTC----ATGATAGTGAGTTCTCATGAGATCTGATGGTTTTGCAAGGCTTT  2342

Query 1873  --------------------------------------------------------------------------  1872
                                                                                      
Sbjct 2343  TCCCCCTTTGCTTGGCACTTCTCTCGCCTGCCGCCATGTGAAGAAGGATGTGTTTGCTTCCCCTTCTGCTATGA  2416

Query 1873  --------------------------------------------------------------------------  1872
                                                                                      
Sbjct 2417  TTGTAAGTTTCTTGAGGCCTCCCAGGCCATGCGAAACTGTGAGTCAATTAAACCTCTGTCTTTTACAAATGACC  2490

Query 1873  --------------------------------------------------------------------------  1872
                                                                                      
Sbjct 2491  CAGGCTTGGGCAGTCCTTTATAGCAGTGTGAGAATGGACCAATATACAGAGTTAGTATTCCAGAGTAAGGTGAA  2564

Query 1873  --------------------------------------------------------------------------  1872
                                                                                      
Sbjct 2565  GTTTCACAAAGGTAGAAATAAGCAGATCAAATCCCAGCAGAGTCCCAGGTCATGGTCTTTGGGTTCACTTAGAC  2638

Query 1873  --------------------------------------------------------------------------  1872
                                                                                      
Sbjct 2639  CTTGCCATCCTTCACCACTTTCCAGTTGTGTCATGCTAGACCACTTCTAGCCTGTCTCCTTGGCTACAAAAATG  2712

Query 1873  --------------------------------------------------------------------------  1872
                                                                                      
Sbjct 2713  GGATCATTAGATCTGCCTCATAGCATTCCTGTGAGAATGAAATAAAATAACATGCGATGTTAGAGTAGATGTTA  2786

Query 1873  --------------------------------------------------------------------------  1872
                                                                                      
Sbjct 2787  AATAAATGTGCAGTTTTCCTTTGGAGTAGAAAGTTACTAAATGAAACTGGTGAGAGAAGGGGTTGAGGTTACTG  2860

Query 1873  --------------------------------------------------------------------------  1872
                                                                                      
Sbjct 2861  GCAAAAGGAAAGGGAACCCCAAATGTTTAAACTTTGTATTGCTTCCTGGAAGACTAAATTAACATCTCCATATG  2934

Query 1873  --------------------------------------------------------------------------  1872
                                                                                      
Sbjct 2935  GAAGCTTTTAGGATTAAAATACACCAGACAGGACAACTCAGTTATAATTTAAAGTGTGTGCTAAAAAAAATCAA  3008

Query 1873  --------------------------------------------------------------------------  1872
                                                                                      
Sbjct 3009  TAAGTAAAAAGATATACATCTCCGTAGTTAATAAAGGAGACAAGTTTTATACCCCCTGTTCTATAAGCAAAGCA  3082

Query 1873  --------------------------------------------------------------------------  1872
                                                                                      
Sbjct 3083  TAAGCATAATAAATTCGAGTTTAATATCTGAAAAGTAGAAAAAAAAAGGAAACCTTTTTAACTCTAAAAAAGCA  3156

Query 1873  --------------------------------------------------------------------------  1872
                                                                                      
Sbjct 3157  AAACAAAACAAACCATATGAAATTGCTGACCATGGTGTAGGTAGTAATATTGAGCAGTAAAAATAATTAGGCAT  3230

Query 1873  --------------------------------------------------------------------------  1872
                                                                                      
Sbjct 3231  AGACAGGTTTCCATTAATAAGCTGACACTGACACTGTGGTGTCAAAGATTCTAAGATATAAGTATAATCAGAAA  3304

Query 1873  --------------------------------------------------------------------------  1872
                                                                                      
Sbjct 3305  GCAGAGGTGAAAGGAAGGCCCCCGCTCCAAAGAAAATAAAAGTTATTGTTTAAGTTAGCAATTTCAGATGACAG  3378

Query 1873  ---------------------------------------------  1872
                                                         
Sbjct 3379  ATGGTGCATTAAAAAAACAACAAAGGCCAGGCACAGTGGCTCACG  3423

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