Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_16073
- Subject:
- XR_001741987.1
- Aligned Length:
- 3449
- Identities:
- 1802
- Gaps:
- 1603
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGTCGGCGCTGCGAAGTGGAGGCGCTGCGAGCGGAGCCGCGCGGAGGGCGCGACCGGCTGGTCCGGGCAGCGTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGTTTGCCGCCTTCGGGGCTCCAGTCCGCGCGCCAGGGCTCGAGCAGTACCGCGGGCCCCTCAGGTGGGCCTCG 148
Query 1 ----------------------------------------------ATGGCGCTGCGCGCCCGGGCGCTGTACG 28
||||||||||||||||||||||||||||
Sbjct 149 GCTCGGGACGCCGGGAGTCGGGACCGCCAGTCGGGGCGCCGGGACCATGGCGCTGCGCGCCCGGGCGCTGTACG 222
Query 29 ACTTCAGGTCGGAGAACCCAGGAGAGATCTCGCTGCGAGAGCACGAGGTGCTGAGCCTGTGCAGCGAGCAGGAC 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 ACTTCAGGTCGGAGAACCCAGGAGAGATCTCGCTGCGAGAGCACGAGGTGCTGAGCCTGTGCAGCGAGCAGGAC 296
Query 103 ATCGAGGGCTGGCTCGAGGGGGTCAACAGCCGCGGCGACCGCGGCCTCTTCCCGGCCTCCTATGTGCAGGTGAT 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ATCGAGGGCTGGCTCGAGGGGGTCAACAGCCGCGGCGACCGCGGCCTCTTCCCGGCCTCCTATGTGCAGGTGAT 370
Query 177 CCGCGCCCCCGAGCCTGGCCCGGCGGGAGACGGCGGCCCGGGCGCCCCGGCCCGCTACGCCAATGTGCCCCCCG 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CCGCGCCCCCGAGCCTGGCCCGGCGGGAGACGGCGGCCCGGGCGCCCCGGCCCGCTACGCCAATGTGCCCCCCG 444
Query 251 GGGGCTTCGAGCCCCTGCCCGTCGCGCCCCCCGCCTCCTTCAAGCCGCCGCCTGACGCCTTCCAGGCGCTGCTG 324
|||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GGGGCTTCGAGCCCCTGCCTGTCGCGCCCCCCGCCTCCTTCAAGCCGCCGCCTGACGCCTTCCAGGCGCTGCTG 518
Query 325 CAGCCACAGCAGGCGCCGCCTCCGAGCACCTTCCAGCCGCCCGGCGCGGGCTTCCCGTACGGCGGGGGCGCCCT 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CAGCCACAGCAGGCGCCGCCTCCGAGCACCTTCCAGCCGCCCGGCGCGGGCTTCCCGTACGGCGGGGGCGCCCT 592
Query 399 GCAGCCGTCGCCTCAGCAGCTCTACGGCGGCTACCAGGCCAGCCAAGGCAGCGATGATGACTGGGACGACGAGT 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GCAGCCGTCGCCTCAGCAGCTCTACGGCGGCTACCAGGCCAGCCAAGGCAGCGATGATGACTGGGACGACGAGT 666
Query 473 GGGACGACAGCTCCACGGTGGCGGACGAGCCGGGCGCTCTGGGCAGCGGAGCATACCCGGACCTCGACGGCTCG 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GGGACGACAGCTCCACGGTGGCGGACGAGCCGGGCGCTCTGGGCAGCGGAGCATACCCGGACCTCGACGGCTCG 740
Query 547 TCTTCGGCGGGTGTGGGCGCAGCCGGCCGCTACCGCCTGTCCACGCGCTCCGACCTGTCCCTGGGCTCCCGCGG 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 741 TCTTCGGCGGGTGTGGGCGCAGCCGGCCGCTACCGCCTGTCCACGCGCTCCGACCTGTCCCTGGGTTCCCGCGG 814
Query 621 CGGCTCGGTCCCCCCGCAGCACCACCCGTCGGGGCCCAAGAGCTCGGCCACCGTGAGCCGCAACCTCAATCGCT 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CGGCTCGGTCCCCCCGCAGCACCACCCGTCGGGGCCCAAGAGCTCGGCCACCGTGAGCCGCAACCTCAATCGCT 888
Query 695 TCTCCACCTTCGTCAAGTCCGGCGGGGAGGCCTTCGTGCTGGGGGAGGCGTCAGGCTTCGTGAAGGACGGGGAC 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TCTCCACCTTCGTCAAGTCCGGCGGGGAGGCCTTCGTGCTGGGGGAGGCGTCAGGCTTCGTGAAGGACGGGGAC 962
Query 769 AAGCTGTGCGTGGTGCTGGGGCCCTATGGCCCCGAGTGGCAGGAGAACCCCTACCCGTTCCAGTGCACCATCGA 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AAGCTGTGCGTGGTGCTGGGGCCCTATGGCCCCGAGTGGCAGGAGAACCCCTACCCGTTCCAGTGCACCATCGA 1036
Query 843 CGACCCCACCAAGCAGACCAAGTTCAAGGGCATGAAGAGCTACATCTCCTACAAGCTGGTGCCCACGCACACGC 916
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CGACCCCACCAAGCAGACCAAGTTCAAGGGCATGAAGAGCTACATCTCCTACAAGCTGGTGCCCACGCACACGC 1110
Query 917 AGGTGCCGGTGCATCGGCGCTACAAGCACTTCGACTGGCTGTACGCGCGCCTGGCGGAGAAGTTCCCGGTCATC 990
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AGGTGCCGGTGCATCGGCGCTACAAGCACTTCGACTGGCTGTACGCGCGCCTGGCGGAGAAGTTCCCGGTCATC 1184
Query 991 TCCGTGCCCCACCTGCCCGAGAAGCAGGCCACCGGCCGCTTCGAGGAGGACTTCATCTCTAAGCGCAGGAAGGG 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TCCGTGCCCCACCTGCCCGAGAAGCAGGCCACCGGCCGCTTCGAGGAGGACTTCATCTCTAAGCGCAGGAAGGG 1258
Query 1065 CCTGATCTGGTGGATGAACCACATGGCCAGCCACCCAGTGCTGGCGCAGTGCGACGTCTTCCAGCACTTCCTGA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CCTGATCTGGTGGATGAACCACATGGCCAGCCACCCAGTGCTGGCGCAGTGCGACGTCTTCCAGCACTTCCTGA 1332
Query 1139 CGTGCCCCAGCAGCACCGACGAGAAAGCCTGGAAGCAGGGCAAGAGGAAGGCCGAGAAGGACGAGATGGTGGGC 1212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 CGTGCCCCAGCAGCACCGACGAGAAAGCCTGGAAGCAGGGCAAGAGGAAGGCCGAGAAGGACGAGATGGTGGGC 1406
Query 1213 GCCAACTTCTTCCTGACCCTTAGCACGCCCCCCGCCGCTGCCCTTGACCTGCAGGAGGTGGAGAGCAAGATCGA 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GCCAACTTCTTCCTGACCCTTAGCACGCCCCCCGCCGCTGCCCTTGACCTGCAGGAGGTGGAGAGCAAGATCGA 1480
Query 1287 CGGCTTCAAGTGCTTCACCAAGAAGATGGACGACAGCGCGCTGCAGCTCAACCACACGGCCAACGAGTTCGCGC 1360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CGGCTTCAAGTGCTTCACCAAGAAGATGGACGACAGCGCGCTGCAGCTCAACCACACGGCCAACGAGTTCGCGC 1554
Query 1361 GCAAGCAGGTGACCGGCTTCAAAAAGGAGTATCAGAAGGTGGGCCAGTCCTTCCGCGGCCTCAGCCAGGCCTTT 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GCAAGCAGGTGACCGGCTTCAAAAAGGAGTATCAGAAGGTGGGCCAGTCCTTCCGCGGCCTCAGCCAGGCCTTT 1628
Query 1435 GAGCTGGACCAGCAGGCCTTCTCGGTGGGCCTGAACCAGGCTATCGCCTTCACCGGAGATGCCTATGACGCCAT 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GAGCTGGACCAGCAGGCCTTCTCGGTGGGCCTGAACCAGGCTATCGCCTTCACCGGAGATGCCTATGACGCCAT 1702
Query 1509 TGGCGAGCTCTTCGCGGAGCAGCCCAGGCAGGACCTGGATCCCGTCATGGACCTATTAGCGCTGTATCAGGGGC 1582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 TGGCGAGCTCTTCGCGGAGCAGCCCAGGCAGGACCTGGATCCCGTCATGGACCTATTAGCGCTGTATCAGGGGC 1776
Query 1583 ATCTGGCTAACTTCCCGGACATCATCCACGTTCAGAAAGG--AG---CTC-------TTACCAAA------GTC 1638
|||||||||||||||||||||||||||||||||||||||| || ||| |||||.|| |||
Sbjct 1777 ATCTGGCTAACTTCCCGGACATCATCCACGTTCAGAAAGGTTAGTCCCTCTAAACATTTACCCAACTTTTGGTC 1850
Query 1639 ---------AAGGAGA-------------GTAGGCGACACGTGGA----GGAAGGGAAGAT--GGAG----GTG 1680
|.|.||| ||.|||.| .|||| .||||.|.|..| |||| |.|
Sbjct 1851 TTTATGATAATGAAGACATCTGACCTCTGGTTGGCCA---TTGGATTGTTGAAGAGGACTTCGGGAGACCAGAG 1921
Query 1681 -CAGA------------------AGGCTG-------AC----GGCATTCA------------------------ 1700
|||| ||.||| || ||| ||||
Sbjct 1922 ACAGATGTCTCGCTATGTTGCCCAGCCTGGTCTCCAACTCCTGGC-TTCAAGCAATTCCTCCTGCCTCGGCCTC 1994
Query 1701 -----------GGATCGCTGTAA-----CACTAT-----TTCTTTTGCCA------------------------ 1729
||||..|.|.|| |||.|| |||| |||
Sbjct 1995 TCCAAGTGCTGGGATTACAGGAATTAGCCACCATGCTCATTCT----CCATTGACTAATCTGTTAATAGTCCTA 2064
Query 1730 -CTTTGGCTGAAATTC-ACCA---------------------------CTTCCATCAAATTCGAG--TGAGAGA 1772
||||||.| ||..|| |||| || |||||.|.| ||.|||.
Sbjct 2065 TCTTTGGGT-AAGGTCAACCATGGAGAAAATGCTGGAAGAGGTAAGGTCT------AAATTGGGGGATGCGAGG 2131
Query 1773 CTTTAAATCACAGATG------------CAGCATTTC----TTACA----------------ACAACAAA---T 1811
.|| || |||| |||||||.| |.||| .||.|.|| |
Sbjct 2132 ATT---AT----GATGGAGGAAGGGGAACAGCATTCCAGGGTGACATAGTTTGGTTGTGTCCCCATCCAAATCT 2198
Query 1812 AATATT---------TTTCCAAAA-----------------AGTTACCCAGAAGTTGGAA---GAA-------- 1848
.||.|| ||||||.|| ||..||||||.||..||.| |||
Sbjct 2199 CATCTTGAATTGTAGTTTCCATAATCCCCACATGTCATGGGAGGGACCCAGTAGGAGGTAATTGAATCACAGGG 2272
Query 1849 -----------------GCTCTTCACAAATATGATAGT--GTT------------------------------- 1872
|||.|||.| |||||||| |||
Sbjct 2273 GCCATTACCCACATGCTGCTGTTCTC----ATGATAGTGAGTTCTCATGAGATCTGATGGTTTTGCAAGGCTTT 2342
Query 1873 -------------------------------------------------------------------------- 1872
Sbjct 2343 TCCCCCTTTGCTTGGCACTTCTCTCGCCTGCCGCCATGTGAAGAAGGATGTGTTTGCTTCCCCTTCTGCTATGA 2416
Query 1873 -------------------------------------------------------------------------- 1872
Sbjct 2417 TTGTAAGTTTCTTGAGGCCTCCCAGGCCATGCGAAACTGTGAGTCAATTAAACCTCTGTCTTTTACAAATGACC 2490
Query 1873 -------------------------------------------------------------------------- 1872
Sbjct 2491 CAGGCTTGGGCAGTCCTTTATAGCAGTGTGAGAATGGACCAATATACAGAGTTAGTATTCCAGAGTAAGGTGAA 2564
Query 1873 -------------------------------------------------------------------------- 1872
Sbjct 2565 GTTTCACAAAGGTAGAAATAAGCAGATCAAATCCCAGCAGAGTCCCAGGTCATGGTCTTTGGGTTCACTTAGAC 2638
Query 1873 -------------------------------------------------------------------------- 1872
Sbjct 2639 CTTGCCATCCTTCACCACTTTCCAGTTGTGTCATGCTAGACCACTTCTAGCCTGTCTCCTTGGCTACAAAAATG 2712
Query 1873 -------------------------------------------------------------------------- 1872
Sbjct 2713 GGATCATTAGATCTGCCTCATAGCATTCCTGTGAGAATGAAATAAAATAACATGCGATGTTAGAGTAGATGTTA 2786
Query 1873 -------------------------------------------------------------------------- 1872
Sbjct 2787 AATAAATGTGCAGTTTTCCTTTGGAGTAGAAAGTTACTAAATGAAACTGGTGAGAGAAGGGGTTGAGGTTACTG 2860
Query 1873 -------------------------------------------------------------------------- 1872
Sbjct 2861 GCAAAAGGAAAGGGAACCCCAAATGTTTAAACTTTGTATTGCTTCCTGGAAGACTAAATTAACATCTCCATATG 2934
Query 1873 -------------------------------------------------------------------------- 1872
Sbjct 2935 GAAGCTTTTAGGATTAAAATACACCAGACAGGACAACTCAGTTATAATTTAAAGTGTGTGCTAAAAAAAATCAA 3008
Query 1873 -------------------------------------------------------------------------- 1872
Sbjct 3009 TAAGTAAAAAGATATACATCTCCGTAGTTAATAAAGGAGACAAGTTTTATACCCCCTGTTCTATAAGCAAAGCA 3082
Query 1873 -------------------------------------------------------------------------- 1872
Sbjct 3083 TAAGCATAATAAATTCGAGTTTAATATCTGAAAAGTAGAAAAAAAAAGGAAACCTTTTTAACTCTAAAAAAGCA 3156
Query 1873 -------------------------------------------------------------------------- 1872
Sbjct 3157 AAACAAAACAAACCATATGAAATTGCTGACCATGGTGTAGGTAGTAATATTGAGCAGTAAAAATAATTAGGCAT 3230
Query 1873 -------------------------------------------------------------------------- 1872
Sbjct 3231 AGACAGGTTTCCATTAATAAGCTGACACTGACACTGTGGTGTCAAAGATTCTAAGATATAAGTATAATCAGAAA 3304
Query 1873 -------------------------------------------------------------------------- 1872
Sbjct 3305 GCAGAGGTGAAAGGAAGGCCCCCGCTCCAAAGAAAATAAAAGTTATTGTTTAAGTTAGCAATTTCAGATGACAG 3378
Query 1873 --------------------------------------------- 1872
Sbjct 3379 ATGGTGCATTAAAAAAACAACAAAGGCCAGGCACAGTGGCTCACG 3423
