Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_16117
- Subject:
- XR_244353.5
- Aligned Length:
- 5058
- Identities:
- 599
- Gaps:
- 4458
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTAAAAGTGCTGGGAGCAGGTGAGCCACAGGCAACTCTTCTCTCGGAACCTGCACACAAACTGGGGCTATAGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATTCTCCAAGGACAGATGGCAGTGGAGCTAGACCTGAGTAGGGGGCAGGGAGTTCAGGACAACCCTCCTGTAAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTGGGGGTGGTCTGGGGGTAAGGCTGGGGCTTCCTGGGAAAAGGAAGGCCATGAGAAGGCAGAGAAGTAGGCCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGCTGGGTTCTTGCAGAAAGCATCAGTGCCTACAAATGGAGCTCCACCCTTCAGTCTGTGTCGTGTTCAGTGT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CACAAAGCTACCACCTGTCACCAGAGCCTACTGCTGCTCTCCACTCAACTGGCCTCTGCTGCCAGGCCACTGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGTCTCTGCTTCCGACTTTGTCTTCTTTCTCCCTTTCCCTCCTTCCCTCATACATTGCTTTCTCTCCCTCTCCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCGTGTCTCTGACATCTCTCACTTCCTTTTAGATGAATCTACTTTAGGTTCATTCCTATATTTAGCATTTATGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCAGTCTACTTCCAGAAATGACTTTAGACTGCCTTTCACATAAAATCACAAAACTACAGGACAGTACAAACAGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTGCCAGAGAAATCTGGGTCAAAGAAAGGAATAGGAAAGAAAGTTTCTGTAGTCAAGCACCTGAACAGGCCCTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGCTCACAGGCAGCCAATGTAAAGAGGGAAACACAGTGAGTTATGCAGTTCCCAGTGTCCAGTTAAAGGAAGCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CACATGCTAGTCATGTGAGACAACCTTTTATTGGGACATCAGGTTCTAGAACTAATTCTAAAGAAGTATCAGAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ACAATATACATAATTTGTCTTTCTTAGTAATTTGGCTTCAAAGACAAATTTTTGACCACACCTCCGTTTTCTCC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GTCAGACTTCTCTCCCTTCTAAGCAGGCTTCTCTGTTGCTCCATTTGCTTCATACATACTTGACCTCTCTTTTC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TATTCCCCATCACTTTTGTGCTGAAGCTAATCATATTTATGTCTGTCTTTCTCTACTTTTCCCTAATTCCCTCT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CCTCCTGACTCCTGTAGACATTCCCAATGATACCCACCGTCATACATTTAGGCTTTTCTTGCCTTTCCCTGAAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CCCTGTATTTATTAATGCATATATTTCCCCTGCTTGTTGTACAAGTAAGTTACTCTTTTCCTTTAATCTGTAAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ATTCATGAAATTCGGGGCCAGGGAAACAGTTTAGCCTTAGGGAAGGGAAAACACTAAGTGAAACTGTTTACAAT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AACCTCATACAACCTTCTGTCCCATCTCCTGGTTCAGCCTAGGTGTTTCACTGGTCCTCTATGAATCCCAGCAC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTATAATCCCAGTCTTTTATCACTCAGGTGCTAGGAAAAAAAACATAGACTCAAGACCCAAGATTCAATGGACC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGGAGAAAGGGGGGCGGTGATCAGGTCACCAGTGACCCCAACCTATGCTCTCGGTCTTTCCTGGAGGCTGCCAA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CCCAGCCCTCATCCTCCCTTGCTCACAAAGTTACAGGGTAGGCACCTGTCAGGACAGAACAGCAGCAGCGCTAC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AGCCCAGAGGTTATACATTTCAACAGAACAGGGATCCTTGGCTACTGTAGAAGCAGTCCTGTATGGAGACCTTG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GACCAGCAGGGGAAGATCTATGGGCATGGGAGGTGGGCGTTGGAAAGGCTGAGTAGGAATGGTGCCTGGCACCC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CTGAACCATGATCTGAGCCTCCCTGGAGAAGGTATTTTATATGTCTGCTGCCAGCTGCTGGTCTCCACACCCTC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AACCGTTCTCAACCCCCCTGCAGGGAGAAGGCCTCCTGGGCACTGTCCTTCCACCTGTGCCAGCCACCCCCTGC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CCCACTGCTGAATGAAGGCCATTTCAAGCGCTGCTTCTCACTCCATTCCTCTCAGCTGTTATTGCTGCAGGGCC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AAGCCCTTTTTAGTGCTGTGCTCGTCCAGCTCACCACCACAGCCCCTCTCAGCCCTCAGTAGGTGGGAGGGGCC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AGCTGCCTCTTTAGGCCAGTTGCATCCTCCATTTATCCAAACCACTCCTCTCCTCCCAGTGGAGTGGGGTTCTG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CCAGTACAGCCCTACTGCATCATCTGCGTCAGCCGGTCCTAGCCCATCTGCAGGGTGAAAGAACTCATCAAGAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CTCCTTCTGCCCTTGTAAGCCCATCCCAGCTACTTGTAACCATCTCTAAGGGCAATGGCATTGCTCCCTACCCA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TTCATCTGCATGAGCTACTCTTGGCTTCCTTAAAGGGTCAAGAAAGCAATTTTTCTGCTTACTAGATTCATTGA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GATCAGCTGTGTGAGCCCCAAAGTGGGACAAGGGTGTCTCCTTCATTACTTAAAGATATTCATGAGGGTGGGTC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ACTACAGATGTTGGGGAGCAAGGGCTAGGATCACTTTTTAAAAAATCACCACTTGTGGCTGTCCCAGAGTGCGG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TTGTACATCCTCCCCACCTCATAACGCAGCCACTGAGGAAGAGTGGTTTTCCTAAGAAGACATTGCTGGAGTTG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 ACTTTCTTCTGTCCAAACAAACAAACAAAAACTAAACACACACACAAACCCCCAGAAACCCACAATATGTACAC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GCTAAGGAAAAACTAGCACCCTTCTGTCCACTCAGCAATAAGAGGGATCTCTTCCCACCTACCCTACCTACTCC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TACCCCCAACCCCCTTCCCCATTAATGTGAGTAATGAATTAGCCTGACCACAGGTGGTCACTGTAGGCTAATGG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AAAATACCCAAGGGAGGGCAAAGCCCCCCATCAGATGCATGAATGTTTGCGAATGTTGACTGCCACTGCCCCAC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ACACTGTGTCTTTATAGAATTCCCCTTTGCCCACCCTCTTCCTGTCTCCACCTGGACACAACTTGCTCAAAGGC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TGGTGACTTGTGGGCCATTCATCTACAACCAAGTCCTGATGGAGCAAGAGGCCCACGCCTAGGGGATGCAAGAA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CAACCCGTTTCTTAAATGTTACCAGTCCCAGCCAATCTTACGGTGACATTACAGTTAAATTTCCCAATTGAAAA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CAAGCAAACAGACACTCAAACTGGTCCTGTAATTGTTGCTAGACTTTATGTGTTGTACAACTAAACATTGCTGT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TTGAACAGTAACTGCCTGGCCTGTCTTATTTGTGCTCCTTGACCAAATCAGCCATTATGTCATCTCACCCATGT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GTGGAGGGTGAGACTCTCTTGGTAAGAAATAGCCACAGATATTAGAGATGAAAACACTTTGTGAGGTCAGTTCA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TCTTCAGTTGGCGTCAGGTCGGGCCTCAGTCATTATTTTCTAGTGTTTCATAACCAAAGTGAGTAATGGATGGG 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 AGGTTGAGGTGGGAAGATGGCTTGAGCATGGGAGGTTGGAGGTGCAGTGAGCTGAGATCATTCCTGACAGGACC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AACCCAAGTCCATACCTAAAGGCAGGGGGCTAAGGGGGCAGGTGAGGTCGGGAGGCCACTCACCTATCACTCAC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CCCTTCGCGCTCGAGCCAATTCTCAGGGCCCGCCTCTTTCTCCCCTTTCTCGGCGGGGGCCTCTACCCTGACTC 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 CGCCCCGCTCCCCGGGCACTGCCCCACCACGTGACCCGGTCTCGCTCCTCCTCCTCCTCCTCCTTACGTCATAA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TCTCCGCCCTCCCCTTCAGAACCGCGCCCCACAGCTCGGCGCAGGTCCCGCCCCTTTCCATCTACGGGGCGGCA 3700
Query 1 ----------------ATGGCGGTGAATCAGAGCCACACCGAGAACCGCCGCGGAGCCCTCATCCCTAACGGTG 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701 GGAGGCCCGAAGCAAGATGGCGGTGAATCAGAGCCACACCGAGAACCGCCGCGGAGCCCTCATCCCTAACGGTG 3774
Query 59 AAAGTCTCTTGAAGCGGTCTCCGAATGTGGAGCTCTCCTTCCCACAGCGATCAGAAGGCTCAAATGTCTTTAGT 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3775 AAAGTCTCTTGAAGCGGTCTCCGAATGTGGAGCTCTCCTTCCCACAGCGATCAGAAGGCTCAAATGTCTTTAGT 3848
Query 133 GGTAGAAAGACAGGAACATTGTTTCTCACTTCATACCGGGTGATTTTCATAACTTCATGCTCCATCAGTGATCC 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3849 GGTAGAAAGACAGGAACATTGTTTCTCACTTCATACCGGGTGATTTTCATAACTTCATGCTCCATCAGTGATCC 3922
Query 207 CATGTTGTCTTTTATGATGCCATTTGATCTGATGACGAACCTCACTGTTGAACAACCAGTATTTGCTGCAAACT 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3923 CATGTTGTCTTTTATGATGCCATTTGATCTGATGACGAACCTCACTGTTGAACAACCAGTATTTGCTGCAAACT 3996
Query 281 TCATTAAGGGAACTATTCAGGCAGCTCCATATGGTGGCTGGGAAGGACAAGCTACTTTTAAATTAGTCTTCAGA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3997 TCATTAAGGGAACTATTCAGGCAGCTCCATATGGTGGCTGGGAAGGACAAGCTACTTTTAAATTAGTCTTCAGA 4070
Query 355 AATGGAGGTGCCATTGAATTTGCCCAGTTGATGGTGAAAGCTGCCTCTGCTGCTGCCCGAGGATTTCCACTTAG 428
|||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4071 AATGGAGATGCCATTGAATTTGCCCAGTTGATGGTGAAAGCTGCCTCTGCTGCTGCCCGAGGATTTCCACTTAG 4144
Query 429 AACCTTAAATGACTGGTTCAGCTCTATGGGAATTTATGTAATTACT-GGGAAGGGAATATGTGCACTCCACAGA 501
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 4145 AACCTTAAATGACTGGTTCAGCTCTATGGGAATTTATGTAATTACTGGGGAAGGGAATATGTGCACTCCACAGA 4218
Query 502 TGCCTTGTTCAGTTATTGTCTATGGAGCCCCACCTGCAGGATATGGAGCCCCACCTCCCGGATACGGAGCCCCA 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4219 TGCCTTGTTCAGTTATTGTCTATGGAGCCCCACCTGCAGGATATGGAGCCCCACCTCCCGGATACGGAGCCCCA 4292
Query 576 CCTGCAGGATATGGAGCCCAACCCG------------------------------------------------- 600
|||||||||||||||||||||||||
Sbjct 4293 CCTGCAGGATATGGAGCCCAACCCGTAGGAAATGAAGGCCCGCCTGTGGGATACAGAGCCTCACCTGTGCGATA 4366
Query 601 -------------------------------------------------------------------------- 600
Sbjct 4367 TGGAGCCCCACCTCTTGGATACGGAGCCCCACCTGCAGGATATGGAGCCCCACCTCTAGGATATGGAGCCCCAC 4440
Query 601 -------------------------------------------------------------------------- 600
Sbjct 4441 CTCTTGGATATGGAACCCCACCTCTCGGATATGGAGCCCCACCTCTCGGATATGGAGCCCCACCTGCAGGAAAT 4514
Query 601 -------------------------------------------------------------------------- 600
Sbjct 4515 GAAGGCCCGCCTGCGGGATACAGAGCCTCACCTGCTGGATCAGGAGCCAGGCCTCAGGAATCTACAGCAGCCCA 4588
Query 601 -------------------------------------------------------------------------- 600
Sbjct 4589 GGCTCCTGAAAACGAGGCTTCTCTTCCCTCTGCCTCCTCTTCTCAGGTCCATTCTTAACCTTCTAAGATGTAAA 4662
Query 601 -------------------------------------------------------------------------- 600
Sbjct 4663 CCTTGAAGACTCACCAAGCAAAGAGGTACCCTAAAATTGAAGTCAGGATAAGGAGGACGACTCAGCTTAGAGTC 4736
Query 601 -------------------------------------------------------------------------- 600
Sbjct 4737 ATTGATTGATCTGCATTGTGAAAATTAGGAAACCAGATGCTCCCATGTTCTCAAGGACAGCCTTTCTTAAGGAA 4810
Query 601 -------------------------------------------------------------------------- 600
Sbjct 4811 GTCAGTACGTGGGCAACAGTGATGAGAGGAAGAGAGGAGAGACTCAACCAACTAGAGCAGGGATAAGGTTTCCC 4884
Query 601 -------------------------------------------------------------------------- 600
Sbjct 4885 TTGTTCAGCTTTTCAGTGTCTGCTGGAATGTGATGATTACCTCATTGTCAGGTAGGAAGTGAAACGTATGATAT 4958
Query 601 -------------------------------------------------------------------------- 600
Sbjct 4959 TCTTCCTGGCCTTTGCCTTGAGAGTCTTCTGGAGCCTGAAGAGGGTGGGGCAGACAACCATGGACTGCTAGAGA 5032
Query 601 -------------------------- 600
Sbjct 5033 ATAAACTTTCTTTGAAGCTTCCTAAA 5058
