Nucleotide Global Alignment

Description

• Query: ccsbBroad304_99988
• Subject: HcRed.1
• Aligned Length: 824
• Identities: 578
• Gaps: 140

Alignment

Query   1  ATGGTGAGCGGCCTGCTGAAGGAGAGTATGCGCATCAAGATGTACATGGAGGGCACCGTGAACGGCCACTACTT  74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   1  ATGGTGAGCGGCCTGCTGAAGGAGAGTATGCGCATCAAGATGTACATGGAGGGCACCGTGAACGGCCACTACTT  74

Query  75  CAAGTGCGAGGGCGAGGGCGACGGCAACCCCTTCGCCGGCACCCAGAGCATGAGAATCCACGTGACCGAGGGCG  148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  75  CAAGTGCGAGGGCGAGGGCGACGGCAACCCCTTCGCCGGCACCCAGAGCATGAGAATCCACGTGACCGAGGGCG  148

Query 149  CCCCCCTGCCCTTCGCCTTCGACATCCTGGCCCCCTGCTGCGAGTACGGCAGCAGGACCTTCGTGCACCACACC  222
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149  CCCCCCTGCCCTTCGCCTTCGACATCCTGGCCCCCTGCTGCGAGTACGGCAGCAGGACCTTCGTGCACCACACC  222

Query 223  GCCGAGATCCCCGACTTCTTCAAGCAGAGCTTCCCCGAGGTGTGGGGACAGACTGNNTCNCNTGNGNGANNACN  296
           ||||||||||||||||||||||||||||||||||||||||              |..||.|.||.|.||..||.
Sbjct 223  GCCGAGATCCCCGACTTCTTCAAGCAGAGCTTCCCCGAGG--------------GCTTCACCTGGGAGAGAACC  282

Query 297  ANCACNNACGAGNATNGGNNGNATNCTGACCGCCCACCAGGACACCAGCNTNGNGGNNAAGTCTGNCTGATCTA  370
           |.|||..|||||.| .||..|.||.||||||||||||||||||||||||.|.|.||..||  |||.||||||||
Sbjct 283  ACCACCTACGAGGA-CGGCGGCATCCTGACCGCCCACCAGGACACCAGCCTGGAGGGCAA--CTGCCTGATCTA  353

Query 371  CAAGGTGAAGGTGCANNGCNCCAACTNCNCCGGCTTACCAAGCNNNCGGCCCCGTGATNNNGNACAAGAGCGGC  444
           |||||||||||||||..||.||||||.|.|||     ||.|     ||||||||||||...|.|||||||||||
Sbjct 354  CAAGGTGAAGGTGCACGGCACCAACTTCCCCG-----CCGA-----CGGCCCCGTGATGAAGAACAAGAGCGGC  417

Query 445  GGNTGACTTCGTTCGCGGNANCNCAGCGTAGAACCGGGATCGAGCCAGTATGATCTCTTCATAGGACCTCTACN  518
           ||.|            ||.|.|.||||                                            ||.
Sbjct 418  GGCT------------GGGAGCCCAGC--------------------------------------------ACC  435

Query 519  GAGGTGGTGTACCCCGAGAACGGCGTGCTNTGCGGCCGCGAATCTCAACCTATACACCTGAAAAAGTGNACGTG  592
           |||||||||||||||||||||||||||||.||||||||                             |.|||||
Sbjct 436  GAGGTGGTGTACCCCGAGAACGGCGTGCTGTGCGGCCG-----------------------------GAACGTG  480

Query 593  NTGGNNCNGNNNNTNNNCNACCGGCACNNGATCNGCCNCCNNTNCTAATTCAAAACAANNANCNANCNGANCAA  666
           .|||..|.|....|...|.||||||||..||||.|||.||..|.|            |..|.|.|.|.||.|||
Sbjct 481  ATGGCCCTGAAGGTGGGCGACCGGCACCTGATCTGCCACCACTAC------------ACCAGCTACCGGAGCAA  542

Query 667  GAAGGCCGTGCGCGCNNTGNNCANNCNCGGCTTNCATTCTCTGTATCCTTNNCCGNCANCNNGCNCCAGATNNT  740
           |||||||||||||||..||..||..|.||||||.||           |||..|||.||.|..||.||||||..|
Sbjct 543  GAAGGCCGTGCGCGCCCTGACCATGCCCGGCTTCCA-----------CTTCACCGACATCCGGCTCCAGATGCT  605

Query 741  NNNGAANANNAANNATCNAGTANNTCGANNTNTNNGAGGCCAGCGTGGCCNGGNACGCCCAGCGACCNNCCNGA  814
           ...|||.|..||..| |.||||..||||..|.|..|||||||||||||||.||.|    ||||||||..||.||
Sbjct 606  GCGGAAGAAGAAGGA-CGAGTACTTCGAGCTGTACGAGGCCAGCGTGGCCCGGTA----CAGCGACCTGCCCGA  674

Query 815  NAAGGCCAAC  824
           .|||||||||
Sbjct 675  GAAGGCCAAC  684