Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_00016
Subject:
NM_001130004.1
Aligned Length:
2837
Identities:
2227
Gaps:
199

Alignment

Query    1  ATGGTGGACTACCA--------CGCGGCGAACCAGTCGTACCAGTACGGCCCCAGCAGCGCGGGCAATGGCGCT  66
            ||||      ||||        |.|.||.|||||                                        
Sbjct    1  ATGG------ACCATTATGATTCTCAGCAAACCA----------------------------------------  28

Query   67  GGCGGCGGGGGCAGCATGGGCGACTACATGGCCCAG---GAGGACGACTGGGACCGGGACCTGCTGCTGGACCC  137
                               .|||.||||||   |||   ||.||.||||||||||||||||||||.||||||||
Sbjct   29  -------------------ACGATTACATG---CAGCCAGAAGAGGACTGGGACCGGGACCTGCTCCTGGACCC  80

Query  138  GGCCTGGGAGAAGCAGCAGCGCAAGACCTTCACGGCATGGTGCAACTCCCACCTGCGGAAGGCAGGCACACAGA  211
            |||||||||||||||||||.|.|||||.||||||||||||||.|||||||||||.||||||||.||.|||||||
Sbjct   81  GGCCTGGGAGAAGCAGCAGAGAAAGACATTCACGGCATGGTGTAACTCCCACCTCCGGAAGGCGGGGACACAGA  154

Query  212  TCGAGAACATTGATGAGGACTTCCGAGACGGGCTCAAGCTCATGCTGCTCCTGGAGGTCATATCAGGGGAGCGG  285
            ||||||||||.||.|||||||||||.||.||.||.||||||||||||||.|||||||||||.|||||.||.||.
Sbjct  155  TCGAGAACATCGAAGAGGACTTCCGGGATGGCCTGAAGCTCATGCTGCTGCTGGAGGTCATCTCAGGTGAACGC  228

Query  286  TTACCTAAGCCGGAGCGGGGGAAGATGAGAGTGCACAAAATCAACAATGTGAACAAAGCGCTGGACTTTATTGC  359
            ||..|.|||||.|||||.||.|||||||||||||||||.|||..|||.||.|||||.||.|||||.||.||.||
Sbjct  229  TTGGCCAAGCCAGAGCGAGGCAAGATGAGAGTGCACAAGATCTCCAACGTCAACAAGGCCCTGGATTTCATAGC  302

Query  360  CAGCAAAGGCGTCAAGCTGGTCTCCATCGGGGCAGAAGAGATTGTGGACGGCAACGCAAAGATGACCCTGGGAA  433
            |||||||||||||||.|||||.||||||||.||.|||||.||.|||||.||.||.|..||||||||||||||.|
Sbjct  303  CAGCAAAGGCGTCAAACTGGTGTCCATCGGAGCCGAAGAAATCGTGGATGGGAATGTGAAGATGACCCTGGGCA  376

Query  434  TGATCTGGACCATCATCCTTAGGTTCGCCATCCAGGACATCTCCGTGGAAGAGACCTCGGCCAAGGAAGGGCTC  507
            |||||||||||||||||||..|.||.|||||||||||||||||||||||||||||.||.||||||||||||||.
Sbjct  377  TGATCTGGACCATCATCCTGCGCTTTGCCATCCAGGACATCTCCGTGGAAGAGACTTCAGCCAAGGAAGGGCTG  450

Query  508  CTTCTCTGGTGCCAGAGAAAGACAGCCCCGTATAAGAACGTCAATGTGCAGAACTTCCACATCAGCTGGAAGGA  581
            ||.||.|||||.|||||||||||||||||.||.||.||.|||||..|.||||||||||||||.|||||||||||
Sbjct  451  CTCCTGTGGTGTCAGAGAAAGACAGCCCCTTACAAAAATGTCAACATCCAGAACTTCCACATAAGCTGGAAGGA  524

Query  582  TGGTCTTGCCTTCAATGCCCTGATCCACCGGCACAGACCAGAGCTGATTGAGTATGACAAGCTGAGGAAGGACG  655
            |||.||.|.||||..|||..||||||||||.|||.|.||.|||||||||||.||.|..||||||.|||||||.|
Sbjct  525  TGGCCTCGGCTTCTGTGCTTTGATCCACCGACACCGGCCCGAGCTGATTGACTACGGGAAGCTGCGGAAGGATG  598

Query  656  ACCCTGTCACCAACCTGAACAATGCCTTCGAAGTGGCTGAGAAATACCTCGACATCCCCAAGATGCTGGATGCA  729
            |.||..||||.||.|||||.|..||.||.||.|||||.|||||.|||||.|||||||||||||||||||||||.
Sbjct  599  ATCCACTCACAAATCTGAATACGGCTTTTGACGTGGCAGAGAAGTACCTGGACATCCCCAAGATGCTGGATGCC  672

Query  730  GAGGACATCGT--GAACACGGCCCGGCCCGACGAGAAGGCCATAATGACCTATGTGTCCAGCTTCTACCATGCC  801
            ||.||||||||  ||  ||.|||||.||.||.|||||.|||||.|||||.||.|||||.|||||||||||.|||
Sbjct  673  GAAGACATCGTTGGA--ACTGCCCGACCGGATGAGAAAGCCATCATGACTTACGTGTCTAGCTTCTACCACGCC  744

Query  802  TTTTCAGGAGCGCAGAAGGCTGAAACTGCCGCCAACCGGATCTGTAAGGTGCTGGCTGTCAACCAAGAGAACGA  875
            ||.||.|||||.||||||||.||.||.||.|||||.||.|||||.||||||.||||.||||||||.||||||||
Sbjct  745  TTCTCTGGAGCCCAGAAGGCGGAGACAGCAGCCAATCGCATCTGCAAGGTGTTGGCCGTCAACCAGGAGAACGA  818

Query  876  GCACCTGATGGAGGACTACGAGAAGCTGGCCAGCGACCTCCTGGAGTGGATCCGGCGCACCATCCCCTGGCTGG  949
            |||.||.|||||.||||||||||||||||||||.||.||..|||||||||||||.|||||.|||||.|||||||
Sbjct  819  GCAGCTTATGGAAGACTACGAGAAGCTGGCCAGTGATCTGTTGGAGTGGATCCGCCGCACAATCCCGTGGCTGG  892

Query  950  AGGACCGTGTGCCCCAAAAGACTATCCAGGAGATGCAGCAGAAGCTGGAGGACTTCCGCGACTACCGGCGTGTG  1023
            ||.||||.||||||.|.||.||.||.||.|..|||||.||||||||||||||||||||.|||||||||||..||
Sbjct  893  AGAACCGGGTGCCCGAGAACACCATGCATGCCATGCAACAGAAGCTGGAGGACTTCCGGGACTACCGGCGCCTG  966

Query 1024  CACAAGCCGCCCAAGGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGCTGCGCCT  1097
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct  967  CACAAGCCGCCCAAGGTGCAGGAGAAGTGCCAGCTGGAGATCAACTTCAACACGCTGCAGACCAAGCTGCGGCT  1040

Query 1098  CAGCAACCGGCCCGCCTTCATGCCCTCCGAGGGCAAGATGGTCTCGGACATCAACAATGGCT--GGCAGCACTT  1169
            ||||||||||||.||||||||||||||.|||||||.|||||||||||||||||||||||.||  |||.|  |.|
Sbjct 1041  CAGCAACCGGCCTGCCTTCATGCCCTCTGAGGGCAGGATGGTCTCGGACATCAACAATGCCTGGGGCTG--CCT  1112

Query 1170  GGAGCAGGCTGAGAAGGGCTACGAGGAGTGGCTGCTGAATGAGATCCGCAGGCTGGAGCGGCTCGACCACCTGG  1243
            ||||||||..|||||||||||.|||||||||.||||||||||||||||.|||||||||||.||.||||||||||
Sbjct 1113  GGAGCAGGTGGAGAAGGGCTATGAGGAGTGGTTGCTGAATGAGATCCGGAGGCTGGAGCGACTGGACCACCTGG  1186

Query 1244  CAGAGAAGTTCCGGCAGAAGGCCTCCATCCACGAGGCCTGGACTGACGGGAAGGAAGCCATGCTGAAGCACCGG  1317
            |||||||||||||||||||||||||||||||||||||||||||||||||.||.||.|||||||||...||...|
Sbjct 1187  CAGAGAAGTTCCGGCAGAAGGCCTCCATCCACGAGGCCTGGACTGACGGCAAAGAGGCCATGCTGCGACAGAAG  1260

Query 1318  GACTACGAGACGGCCACACTATCGGACATCAAAGCCCTCATTCGC-----AAGCACGAGGCCTTCGAGAGCGAC  1386
            |||||.|||||.|||||.||.|||||.|||||.|||||     ||     |||||.||||||||||||||.|||
Sbjct 1261  GACTATGAGACCGCCACCCTCTCGGAGATCAAGGCCCT-----GCTCAAGAAGCATGAGGCCTTCGAGAGTGAC  1329

Query 1387  CTGGCTGCGCACCAGGACCGCGTGGAGCAGATCGCCGCCATTGCCCAGGAGCTCAACGAGCTGGATTACTACGA  1460
            ||||||||.|||||||||||.|||||||||||.||||||||.||.|||||||||||.||||||||.||.||.||
Sbjct 1330  CTGGCTGCCCACCAGGACCGTGTGGAGCAGATTGCCGCCATCGCACAGGAGCTCAATGAGCTGGACTATTATGA  1403

Query 1461  CTCCCACAATGTCAACACCCGGTGCCAGAAGATCTGTGACCAGTGGGACGCCCTCGGCTCTCTGACACATAGTC  1534
            |||.|.||.|||||||.||||.|||||.|||||||||||||||||||||...||.||..|.||.||.||.|..|
Sbjct 1404  CTCACCCAGTGTCAACGCCCGTTGCCAAAAGATCTGTGACCAGTGGGACAATCTGGGGGCCCTAACTCAGAAGC  1477

Query 1535  GCAGGGAAGCCCTGGAGAAAACAGAGAAGCAGCTGGAGGCCATCGACCAGCTGCACCTGGAATACGCCAAGCGC  1608
            |.||||||||.||||||...||.|||||.|.|||||||.||||.|||||||||.||.||||.||.||||||||.
Sbjct 1478  GAAGGGAAGCTCTGGAGCGGACCGAGAAACTGCTGGAGACCATTGACCAGCTGTACTTGGAGTATGCCAAGCGG  1551

Query 1609  GCGGCCCCCTTCAACAACTGGATGGAGAGCGCCATGGAGGACCTCCAGGACATGTTCATCGTCCATACCATCGA  1682
            ||.||.|||||||||||||||||||||.|.||||||||||||||.|||||||..|||||.||.||.|||||.||
Sbjct 1552  GCTGCACCCTTCAACAACTGGATGGAGGGGGCCATGGAGGACCTGCAGGACACCTTCATTGTGCACACCATTGA  1625

Query 1683  GGAGATTGAGGGCCTGATCTCAGCCCATGACCAGTTCAAGTCCACCCTGCCGGACGCCGATAGGGAGCGCGAGG  1756
            ||||||..||||.||||.|.||||||||||.|||||||||.|||||||.||.||.|||||.|.|||||||..||
Sbjct 1626  GGAGATCCAGGGACTGACCACAGCCCATGAGCAGTTCAAGGCCACCCTCCCTGATGCCGACAAGGAGCGCCTGG  1699

Query 1757  CCATCCTGGCCATCCACAAGGAGG---CCCAGAGGATCGCTGAGAGCAACCACATCAAGCTGTCGGGCAGCAAC  1827
            |||||||||.|||||||||.||||   ||   |.|||.|...|||.|.|||||.||||..||.||||||.||||
Sbjct 1700  CCATCCTGGGCATCCACAATGAGGTGTCC---AAGATTGTCCAGACCTACCACGTCAATATGGCGGGCACCAAC  1770

Query 1828  CCCTACACCACCGTCACCCCGCAAATCATCAACTCCAAGTGGGAGAAGGTGCAGCAGCTGGTGCC----AAAAC  1897
            ||||||||.|||.||||.||.||....|||||...|||.|||||..|.||||.||||||||||||    |    
Sbjct 1771  CCCTACACAACCATCACGCCTCAGGAGATCAATGGCAAATGGGACCACGTGCGGCAGCTGGTGCCTCGGA----  1840

Query 1898  GGGACCATGCCCTCCTGGAGGAGCA-----GAGCAAGCAGCAGTCCAACGAGCACCTGCGCCGCCAGTTCGCCA  1966
            |||||||.||.||...|||||||||     ||     ||||||..|||.|||...||.|||...|||||.| .|
Sbjct 1841  GGGACCAAGCTCTGACGGAGGAGCATGCCCGA-----CAGCAGCACAATGAGAGGCTACGCAAGCAGTTTG-GA  1908

Query 1967  G-CCAGGCCAATGTTGTGGGGCCCTGGATCCAGACCAAGATGGAGGAGATCGGGCGCATCTCCATTGAGATGAA  2039
            | ||||||||||||..|.||||||||||||||||||||||||||||||||||||.|.|||||||||||||||.|
Sbjct 1909  GCCCAGGCCAATGTCATCGGGCCCTGGATCCAGACCAAGATGGAGGAGATCGGGAGGATCTCCATTGAGATGCA  1982

Query 2040  CGGGACCCTGGAGGACCAGCTGAGCCACCTGAAGCAGTATGA-ACGCAGCATCGTGGACTACAAGCCCAACCTG  2112
            .||||||||||||||||||||.|||||||||..||||||||| |.| ||||||||..||||||||||.||..|.
Sbjct 1983  TGGGACCCTGGAGGACCAGCTCAGCCACCTGCGGCAGTATGAGAAG-AGCATCGTCAACTACAAGCCAAAGATT  2055

Query 2113  GACCTGCTGGAGCAGC-AGCACCAGCTCATCCAGGAGGCCCTCATCTTCGACAACAAGCACACCAACTATACCA  2185
            ||.|.||||||| .|| |.||||||||||||||||||||.|||||||||||||||||||||||||||||.||||
Sbjct 2056  GATCAGCTGGAG-GGCGACCACCAGCTCATCCAGGAGGCGCTCATCTTCGACAACAAGCACACCAACTACACCA  2128

Query 2186  TGGAGCACATCCGCGTGGGCTGGGAGCAGCTGCTCACCACCATTGCCCGCACCATCAACGAGGTGGAGAACCAG  2259
            |||||||||||||.|||||||||||||||||||||||||||||.|||.|.||||||||.|||||.|||||||||
Sbjct 2129  TGGAGCACATCCGTGTGGGCTGGGAGCAGCTGCTCACCACCATCGCCAGGACCATCAATGAGGTAGAGAACCAG  2202

Query 2260  ATCCTCACCCGCGACGCCAAGGGCATCAGCCAGGAGCAGATGCAGGAGTTCCGGGCGTCCTTCAACCACTTCGA  2333
            |||||.|||||.||.|||||||||||||||||||||||||||.|.|||||||||||.||||||||||||||.||
Sbjct 2203  ATCCTGACCCGGGATGCCAAGGGCATCAGCCAGGAGCAGATGAATGAGTTCCGGGCCTCCTTCAACCACTTTGA  2276

Query 2334  CAAGGATCATGGCGGGGCGCTGGGGCCCGAGGAGTTCAAGGCCTGCCTCATCAGCCTGGGCTACGACGTGGAGA  2407
            |..||||||...|||..|.|||||.||||||||||||||.|||||||||||||||.||||.||.||..|.|..|
Sbjct 2277  CCGGGATCACTCCGGCACACTGGGTCCCGAGGAGTTCAAAGCCTGCCTCATCAGCTTGGGTTATGATATTGGCA  2350

Query 2408  ACGACC--------------GGCA--------------------------------------------------  2417
            ||||||              ||||                                                  
Sbjct 2351  ACGACCCCCAGAAGAAGACAGGCATGATGGACACGGATGATTTCCGCGCCTGCCTGATCTCCATGGGTTACAAC  2424

Query 2418  --GGGTGAGGCCGAGTTCAACCGCATCATGAGCCTGGTCGACCCCAACCATAGC---GGCCTTGTGACCTTCCA  2486
              |||.||.||.||.||...|||||||||||||.|.||.||||||||||   ||   ||..|.|||||.|||||
Sbjct 2425  ATGGGAGAAGCAGAATTTGCCCGCATCATGAGCATTGTGGACCCCAACC---GCCTGGGGGTAGTGACATTCCA  2495

Query 2487  AGCCTTCATCGACTTCATGTCGCGGGAGACCACCGACACGGACACGGCTGACCAGGTCATCGCTTCCTTCAAGG  2560
            .||||||||.|||||||||||.||.|||||..|||||||.||.||.||.|||||.|||||.||||||||||||.
Sbjct 2496  GGCCTTCATTGACTTCATGTCCCGCGAGACAGCCGACACAGATACAGCAGACCAAGTCATGGCTTCCTTCAAGA  2569

Query 2561  TCTTAGCAGGGGACAAGAACTTCATCACAGCTGAGGAGCTGCGGAGAGAGCTGCCCCCCGACCAGGCCGAGTAC  2634
            ||.|.||.|||||||||||||.|||.||....||.||||||||..|.||||||||.|||||||||||.||||||
Sbjct 2570  TCCTGGCTGGGGACAAGAACTACATTACCATGGACGAGCTGCGCCGCGAGCTGCCACCCGACCAGGCTGAGTAC  2643

Query 2635  TGCATCGCCCGCATGGCGCCATACCAGGGCCCTGACGCCGTGCCCGGTGCCCTCGACTACAAGTCCTTCTCCAC  2708
            ||||||||.||.|||||.||.|||...|||||.|||.|||||||.|||||.||.|||||||.||||||||||||
Sbjct 2644  TGCATCGCGCGGATGGCCCCCTACACCGGCCCCGACTCCGTGCCAGGTGCTCTGGACTACATGTCCTTCTCCAC  2717

Query 2709  GGCCTTGTATGGCGAGAGCGACCTG  2733
            |||..||||.||||||||.|||||.
Sbjct 2718  GGCGCTGTACGGCGAGAGTGACCTC  2742

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