Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_00076
Subject:
NM_001310600.1
Aligned Length:
2135
Identities:
1319
Gaps:
691

Alignment

Query    1  ATGTCTGTTCCATCATCACTGAGCCAGTCGGCCATTAATGCCAACAGCCACGGAGGCCCCGCACTGAGCCTACC  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CCTGCCTCTGCACGCTGCCCACAACCAGCTGCTCAACGCCAAGCTGCAGGCCACAGCTGTGGGACCCAAGGACC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TGCGCAGCGCCATGGGGGAGGGTGGTGGGCCTGAGCCAGGCCCTGCCAATGCCAAGTGGCTAAAAGAGGGCCAG  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  AACCAGCTCCGGCGGGCCGCCACGGCCCACCGTGACCAGAATCGCAATGTGACCTTGACCTTGGCGGAGGAGGC  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  CAGCCAGGAGCCTGAGATGGCACCCTTGGGCCCCAAAGGCCTGATACACCTGTACTCTGAGCTGGAGCTCTCAG  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  CTCACAACGCAGCCAACCGAGGCCTACGAGGACCTGGCCTGATCATCAGCACTCAAGAGCAGGGGCCAGATGAG  444
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  445  GGAGAGGAGAAGGCGGCCGGGGAGGCCGAGGAGGAGGAGGAGGATGATGATGATGAAGAGGAGGAGGAGGACTT  518
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  519  ATCTTCTCCCCCAGGGCTGCCTGAGCCCCTGGAGAGTGTGGAGGCCCCTCCCAGGCCCCAAGCCCTTACAGATG  592
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  593  GCCCCCGGGAACACAGCAAGAGTGCCAGCCTCCTGTTTGGCATGCGGAACAGTGCAGCCAGTGATGAGGACTCA  666
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  667  AGCTGGGCTACCTTATCCCAGGGCAGCCCCTCCTATGGCT----CCCCAGAGGACA------CAGATTCCTTCT  730
                     |..||.|||||||  |...|.|||  |||||    .||...||||||      ||||||||||||
Sbjct    1  ---------ATGTTCTCCCAGG--ACTTCTTCC--TGGCTATCATCCTGCAGGACAACAGTCCAGATTCCTTCT  61

Query  731  GGAACCCCAACGCCTTCGAGACGGATTCCGACCTGCCGGCTGGATGGATGAGGGTCCAGGACACCTCAGGGACC  804
            |||||||||||||.|||||||||||||||||.||.||||||||||||||||||||.||||||||||||||||||
Sbjct   62  GGAACCCCAACGCTTTCGAGACGGATTCCGATCTACCGGCTGGATGGATGAGGGTACAGGACACCTCAGGGACC  135

Query  805  TATTACTGGCACATCCCAACAGGGACCACCCAGTGGGAACCCCCCGGCCGGGCCTCCCCCTCACAGGGGAGCAG  878
            ||.|||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||
Sbjct  136  TACTACTGGCACATCCCAACAGGGACCACCCAGTGGGAACCCCCAGGCCGGGCCTCCCCCTCACAGGGGAGCAG  209

Query  879  CCCCCAAGAGGAGTCCCAGCTCACCTGGACAGGTTTTGCTCATGGAGAAGGCTTTGAGGATGGAGAATTTTGGA  952
            |||||||||.||||||||||||||||||||.||.||||||||...|||||||||||||||.|||||.|||||||
Sbjct  210  CCCCCAAGAAGAGTCCCAGCTCACCTGGACTGGCTTTGCTCACCAAGAAGGCTTTGAGGAAGGAGAGTTTTGGA  283

Query  953  AGGATGAACCCAGTGATGAGGCCCCAATGGAGCTGGGACTGAAGGAACCTGAGGAGGGGACGTTGACCTTCCCA  1026
            ||||||||||||||||.|||||||||||||||.|||||||||||||.||.|||||||.|||.|||.||||||||
Sbjct  284  AGGATGAACCCAGTGAGGAGGCCCCAATGGAGTTGGGACTGAAGGACCCCGAGGAGGCGACATTGTCCTTCCCA  357

Query 1027  GCTCAGAGCCTCAGCCCAGAGCC-GTTGCCCCAAGAGGAGGAGAAGCTTCCCCCACGGAATACCAACCCAGGGA  1099
            ||||||||||||||||||||.|| ||| |||||.|||||.||||||||..|||.|||||||.||||||||||||
Sbjct  358  GCTCAGAGCCTCAGCCCAGAACCAGTT-CCCCAGGAGGAAGAGAAGCTGTCCCAACGGAATGCCAACCCAGGGA  430

Query 1100  TCAAGTGTTTCGCCGTGCGCTCCCTAGGCTGGGTAGAGATGACCGAGGAGGAGCTGGCCCCTGGACGCAGCAGT  1173
            |||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||
Sbjct  431  TCAAGTGTTTCGCTGTGCGCTCCCTAGGCTGGGTAGAGATGACCGAGGAGGAGCTGGCCCCAGGACGCAGCAGT  504

Query 1174  GTGGCAGTCAACAATTGCATCCGTCAGCTCTCTTACCACAAAAACAACCTGCATGACCCCATGTCTGGGGGCTG  1247
            |||||||||||||||||.|||||.||||||||.||||||||||||||.||.|||||.||.|||.||||||||||
Sbjct  505  GTGGCAGTCAACAATTGTATCCGCCAGCTCTCCTACCACAAAAACAATCTACATGATCCGATGGCTGGGGGCTG  578

Query 1248  GGGGGAAGGAAAGGATCTGCTACTGCAGCTGGAGGATGAGACACTAAAGCTAGTGGAGCCACAGAGCCAGGCAC  1321
            |||.||.||||||||||||||.||.|||||||||||.|||||.||||||.|.|||||||||||||.||||.|.|
Sbjct  579  GGGAGAGGGAAAGGATCTGCTGCTCCAGCTGGAGGACGAGACTCTAAAGTTGGTGGAGCCACAGAACCAGACGC  652

Query 1322  TGCTGCACGCCCAACCCATCATCAGCATCCGCGTGTGGGGCGTCGGGCGGGACAGTGGAAGGGACTTTGCCTAC  1395
            |||||||.||.||.||||||.|||||||.||.|||||||||||.||||||||||||||||||||||||||||||
Sbjct  653  TGCTGCATGCACAGCCCATCGTCAGCATTCGTGTGTGGGGCGTTGGGCGGGACAGTGGAAGGGACTTTGCCTAC  726

Query 1396  GTAGCTCGTGATAAGCTGACCCAGATGCTCAAGTGCCACGTGTTTCGCTGTGAGGCACCTGCCAAGAACATCGC  1469
            ||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  727  GTAGCTCGAGATAAGCTGACCCAGATGCTCAAGTGCCACGTGTTTCGCTGTGAGGCACCTGCCAAGAACATCGC  800

Query 1470  CACCAGCCTGCATGAGATCTGCTCTAAGATCATGGCCGAACGGCGTAATGCCCGCTGCTTGGTAAATGGACTCT  1543
            ||||||||||||||||||||||||.|||||||||.|.||||||||.|||||.|||||||||||.||||||||||
Sbjct  801  CACCAGCCTGCATGAGATCTGCTCCAAGATCATGTCTGAACGGCGCAATGCTCGCTGCTTGGTCAATGGACTCT  874

Query 1544  CCCTGGACCACTCTAAACTTGTGGATGTCCCTTTCCAAGTGGAATTCCCAGCGCCTAAGAATGAGTTGGTCCAG  1617
            ||||.||||||||||||||.||||||||||||||||||||||||||||||||.||.|||||||||.||||.|||
Sbjct  875  CCCTAGACCACTCTAAACTCGTGGATGTCCCTTTCCAAGTGGAATTCCCAGCACCAAAGAATGAGCTGGTGCAG  948

Query 1618  AAGTTCCAAGTCTATTACCTGGGGAATGTACCTGTTGCTAAACCTGTTGGGGTAGATGTGATTAATGGGGCCCT  1691
            |||||||||||||||||||||||.|||||.||.|||||||||||||||||||||||.|||||||||||||||||
Sbjct  949  AAGTTCCAAGTCTATTACCTGGGAAATGTGCCAGTTGCTAAACCTGTTGGGGTAGACGTGATTAATGGGGCCCT  1022

Query 1692  CGAGTCAGTCCTGTCCTCCAGCAGCCGTGAACAATGGACCCCAAGTCATGTCAGTGTGGCCCCTGCTACCCTCA  1765
            .||||||||||||||.|||||.||||||||.||.|||||.||||||||.|||||.|||||||||||.|||||||
Sbjct 1023  GGAGTCAGTCCTGTCTTCCAGTAGCCGTGAGCAGTGGACTCCAAGTCACGTCAGCGTGGCCCCTGCCACCCTCA  1096

Query 1766  CCATCTTGCACCAGCAGACAGAGGCAGTGCTGGGAGAGTGTCGGGTGCGTTTCCTCTCCTTCCTGGCCGTGGGC  1839
            ||||||||||||||||||||||.||.||||||||.|||||.||||||||.||.||||||||||||||.||||||
Sbjct 1097  CCATCTTGCACCAGCAGACAGAAGCGGTGCTGGGGGAGTGCCGGGTGCGGTTTCTCTCCTTCCTGGCTGTGGGC  1170

Query 1840  AGAGATGTCCACACGTTTGCATTCATCATGGCTGCCGGCCCAGCCTCCTTCTGCTGCCACATGTTCTGGTGCGA  1913
            ||||||||.|||||.||.||.|||||||||||||||||||||||||||||||||||.||||||||.|||||.||
Sbjct 1171  AGAGATGTGCACACATTCGCGTTCATCATGGCTGCCGGCCCAGCCTCCTTCTGCTGTCACATGTTTTGGTGTGA  1244

Query 1914  GCCCAATGCTGCCAGCCTCTCAGAGGCTGTGCAGGCTGCGTGCATGCTTCGCTACCAGAAGTGTCTGGATGCCC  1987
            |||||||||||||||.|||||||||||||||||||||||.||||||||.|||||||||||||||||||||||.|
Sbjct 1245  GCCCAATGCTGCCAGTCTCTCAGAGGCTGTGCAGGCTGCATGCATGCTCCGCTACCAGAAGTGTCTGGATGCTC  1318

Query 1988  GTTCCCAGGCCTCCACCTCCTGCCTCCCAGCACCCCCTGCTGAGTCTGTGGCACGGCGTGTAGGGTGGACTGTC  2061
            |.||||||.|||||||||||||||||||||||||||||||.|||||.||.|||.|.||||||||||||||.|||
Sbjct 1319  GCTCCCAGACCTCCACCTCCTGCCTCCCAGCACCCCCTGCGGAGTCAGTTGCAAGACGTGTAGGGTGGACAGTC  1392

Query 2062  CGCAGGGGTGTTCAGTCGCTGTGGGGCTCCCTGAAGCCCAAACGGCTGGGGGCCCATACCCCA  2124
            ||||||||||||||||||||||||||.|||||.|||||||||||.|||||..||||.||||||
Sbjct 1393  CGCAGGGGTGTTCAGTCGCTGTGGGGTTCCCTCAAGCCCAAACGTCTGGGATCCCAGACCCCA  1455

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