Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_00154
- Subject:
- XR_001743546.2
- Aligned Length:
- 4639
- Identities:
- 1128
- Gaps:
- 3491
Alignment
Query 1 ------------------------------ATGGCGGTTGTAGCGGCGGCTGCCGGCTGGCTACTCAGGCTCAG 44
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATAGCCTGAGAATCCCGGTGGTGAGCGGGGATGGCGGTTGTAGCGGCGGCTGCCGGCTGGCTACTCAGGCTCAG 74
Query 45 GGCGGCAGGGGCTGAGGGGCACTGGCGTCGGCTTCCTGGCGCGGGGCTGGCGCGGGGCTTTTTGCACCCCGCCG 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GGCGGCAGGGGCTGAGGGGCACTGGCGTCGGCTTCCTGGCGCGGGGCTGGCGCGGGGCTTTTTGCACCCCGCCG 148
Query 119 CGACTGTCGAGGATGCGGCCCAGAGGCGGCAGGTGGCTCATTTTACTTTCCAGCCAGATCCGGAGCCCCGGGAG 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CGACTGTCGAGGATGCGGCCCAGAGGCGGCAGGTGGCTCATTTTACTTTCCAGCCAGATCCGGAGCCCCGGGAG 222
Query 193 TACGGGCAAACTCAGAAAATGAATCTTTTCCAGTCTGTAACAAGTGCCTTGGATAACTCATTGGCCAAAGATCC 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TACGGGCAAACTCAGAAAATGAATCTTTTCCAGTCTGTAACAAGTGCCTTGGATAACTCATTGGCCAAAGATCC 296
Query 267 TACTGCAGTAATATTTGGTGAAGATGTTGCCTTTGGTGGAGTCTTTAGATGCACTGTTGGCTTGCGAGACAAAT 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TACTGCAGTAATATTTGGTGAAGATGTTGCCTTTGGTGGAGTCTTTAGATGCACTGTTGGCTTGCGAGACAAAT 370
Query 341 ATGGAAAAGATAGAGTTTTTAATACCCCATTGTGTGAACAAGGAATTGTTGGATTTGGAATCGGAATTGCGGTC 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ATGGAAAAGATAGAGTTTTTAATACCCCATTGTGTGAACAAGGAATTGTTGGATTTGGAATCGGAATTGCGGTC 444
Query 415 ACTGGAGCTACTGCCATTGCGGAAATTCAGTTTGCAGATTATATTTTCCCTGCATTTGATCAGATTGTTAATGA 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ACTGGAGCTACTGCCATTGCGGAAATTCAGTTTGCAGATTATATTTTCCCTGCATTTGATCAGATTGTTAATGA 518
Query 489 AGCTGCCAAGTATCGCTATCGCTCTGGGGATCTTTTTAACTGTGGAAGCCTCACTATCCGGTCCCCTTGGGGCT 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AGCTGCCAAGTATCGCTATCGCTCTGGGGATCTTTTTAACTGTGGAAGCCTCACTATCCGGTCCCCTTGGGGCT 592
Query 563 GTGTTGGTCATGGGGCTCTCTATCATTCTCAGAGTCCTGAAGCATTTTTTGCCCATTGCCCAGGAATCAAGGTG 636
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GTGTTGGTCATGGGGCTCTCTATCATTCTCAGAGTCCTGAAGCATTTTTTGCCCATTGCCCAGGAATCAAGGTG 666
Query 637 GTTATACCCAGAAGCCCTTTCCAGGCCAAAGGACTTCTTTTGTCATGCATAGAGGATAAAAATCCTTGTATATT 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GTTATACCCAGAAGCCCTTTCCAGGCCAAAGGACTTCTTTTGTCATGCATAGAGGATAAAAATCCTTGTATATT 740
Query 711 TTTTGAACCTAAAATACTTTACAGGGCAGCAGCGGAAGAAGTCCCTATAGAACCATACAACATCCCACTGTCCC 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TTTTGAACCTAAAATACTTTACAGGGCAGCAGCGGAAGAAGTCCCTATAGAACCATACAACATCCCACTGTCCC 814
Query 785 AGGCCGAAGTCATACAGGAAGGGAGTGATGTTACTCTAGTTGCCTGGGGCACTCAGGTTCATGTGATCCGAGAG 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AGGCCGAAGTCATACAGGAAGGGAGTGATGTTACTCTAGTTGCCTGGGGCACTCAGGTTCATGTGATCCGAGAG 888
Query 859 GTAGCTTCCATGGCAAAAGAAAAGCTTGGAGTGTCTTGTGAAGTCATTGATCTGAGGACTATAATACCTTGGGA 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GTAGCTTCCATGGCAAAAGAAAAGCTTGGAGTGTCTTGTGAAGTCATTGATCTGAGGACTATAATACCTTGGGA 962
Query 933 TGTGGACACAATTTGTAAGTCTGTGATCAAAACAGGGCGACTGCTAATCAGTCACGAGGCTCCCTTGACAGGCG 1006
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGTGGACACAATTTGTAAGTCTGTGATCAAAACAGGGCGACTGCTAATCAGTCACGAGGCTCCCTTGACAGGCG 1036
Query 1007 GCTTTGCATCGGAAATCAGCTCTACAGTTCAGGAGGAATGTTTCTTGAACCTAGAGG-CTCCTATATCAAGAGT 1079
|||||||||||||||||||||||||||||||| |||| .|..|||| ||| ||.|||.|
Sbjct 1037 GCTTTGCATCGGAAATCAGCTCTACAGTTCAG---------TTCT----GCCGGAGGCCTC-----TCCAGATT 1092
Query 1080 ATG------TGGTTATGA------CAC----ACCATTTCCTCACATTTTTGAACCATTCT----ACATCCCA-G 1132
.|| ||| || ||| |.|||.||||||..|.| |||.||| .||||.|| |
Sbjct 1093 GTGATGCACTGG----GAGCAAGCCACCATGAACATATCCTCAGGTCT-----CCAGTCTTCTGCCATCGCATG 1157
Query 1133 ACAAATGGA------------------------------------------------------AGTGTT----A 1148
|.||||||| ||||.| |
Sbjct 1158 AAAAATGGAGCTTGTCAAACACAGAGCAGAGCTGAACTTTCTGAATTCCACAGGACAGTTCAGAGTGCTTGGAA 1231
Query 1149 TGA--------TGCCCTT----CGAAAA------ATGAT------CAACTAT---------------------- 1176
||| |||..|| |.|||| ||||| |.|| ||
Sbjct 1232 TGACACCCACCTGCAATTTAAACAAAAAAGAAGGATGATTTGCTGCTAC-ATTTGTGTGGGAAGTGCTGCTTGC 1304
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 1305 CGATAGGGAAGTAGGAGAGGAAATAAGGAAAACAATAAACCAAGTACAGTTTTGCAAATACCCAGACACATTGG 1378
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 1379 ATGGACACAGAAGCTTTCACTGGGAGATTATGAAGGGTAGATGCTTTGTGTCTCCATTGCCTCCTGTGATGTGA 1452
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 1453 CCTCACATTACAAGCCACTGTGGTTGGAACTGCTGGCAAAATGGAAAGAACCAGGAAGAACATCAAAGGAGAGT 1526
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 1527 TTTAAAAGGATATGAAATGTATTAATTTGTCGTAATTATCTACTTTTGATAGAAGAATCTCAGAGGTACTTAAG 1600
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 1601 TTGATGTCTTGGACCTTCAGTCCAGTGCTGACATCTTGTAAAATGTCTTAAGTTCCTACCAGGTAATTTCTGCT 1674
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 1675 TTCTGTCACAAAGCAGGAGAGAAGTTCCAGGAGGAAGTCATGTATTTTTCTCATCTTTAGGTATATTATATGTA 1748
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 1749 TACCCCATATTTCCCTATATTATACTTACACATATATTTATGTTACACTTTCTATTTCTCTTATTTACGTACAT 1822
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 1823 TATTAACAAAAAATTTTTGGAAGATTGTAGAAATAAGACATGTAGGCATTTGAAATTTTGTGAGAAAGAGCATG 1896
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 1897 TCAGATTTGGGAGTTAGGGATTTTTAGACATTGCCATAAGAGGTAAGTAAATGCTGACACCTTGCCTATAGTTA 1970
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 1971 ATAAAAATATATTATACATTTGAAGTTTTCTAAGAGAGTAGATTTAAAATTTTCTCACTATACACACACACAAT 2044
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 2045 ATATATATAACTATGTTAGGTGATTAACGTTAATTAGCTTGATTATGGTAATCATTTCACAACATAGACATATA 2118
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 2119 TCAAAACATCACATTGTATGCTTTGAATACATACCATTTTTATTTGTCAACCATTCCCCAATAAAGCTGGAAAA 2192
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 2193 AACAAGACTTCATTCCTGTCAAATCTACTTCTCAGGGACCTACTCCAAGGGAGTCGCCATTCCTTCATTTTATT 2266
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 2267 ATTAAATTGCTTCTTCATAGAAAACCTATCTTCGGTGAAAAAATTAGACTCCAGAAATGATATTTTGCCAGAAA 2340
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 2341 CATCTCTAAAAGCCTTTTTATCTCCCTGATGAACTCAATGTAGCTATGGAAATTTGAATTCCCTATCTGGGGTC 2414
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 2415 AGCTTCAGAAATGTGTTTATTTATGTGCTTCGAATTGACTTATCAACTAATGAACCAAGAAACAATTTTTCTTT 2488
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 2489 TGGCTGTGTTTTAAAAGGGTCTTGCTCAAATTTTAAAGGTTGGGGCATTTTAGAGTCAGATTTGTTTCATAATT 2562
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 2563 TTTCTATGTAACATATTCACTTCCCATTAAAATGTAATTTTCCCTACCAATAAGGTGTTAGGCTTCTGATCCCT 2636
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 2637 CAGGGGAACTGTGGTTGACATGAGCATTACCTCATCCAAATGTATGTTCCCAGTGAACCTGTCATCGAGTGGAC 2710
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 2711 TTGATGCCTTCATTTTTTCCTTTTGTAGCAAGATGCCTAACTGGTTACTTATGCAAGCATTGTTATTGAAATTA 2784
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 2785 GGGGGAGTAAGGGGAATAAAAAATGTATGGAAATTATGAGTGTTAGAACTGAGCACAATCATTGCAGCATCTGA 2858
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 2859 TGCAGACATTTCAGGGTAAGCGAAGTAGTCTCTTCAGAATAAAAATGAGGGTAATTAGACTCAATTCATTTATT 2932
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 2933 CAACACTTGGGTCAAGTCCATGAACTCTACAAAGATAACTGTGCCATGGATTTTGCTCTCTAGAGTGGTAAGAC 3006
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 3007 ACGTATATGGTTTGTCTACTCATTCAGCAAACACTTTCTGGGCATGTTTTGTCTCCTGAGGTCAGCTCTGGAGA 3080
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 3081 TACAATGGTACATGGCACAAATCTTTGCAAGTGCTAAATATAATACCTGATATTAATAGGCTGTGAGTGAAGAG 3154
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 3155 CACAAAATGTGTAGTGGGTGTTCCTGGGATACAGTAGCTCTGTGCATGTAGAAGGGATTAGTAAGGGCCTCGTG 3228
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 3229 AAGGAGACAGCATTTGTTCTGGGACTTGAAGGAAAGACAGGATTGGAAATGTAGAGATGCTAAGGAAGGTTGTC 3302
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 3303 CTCAATAGAGAAAATGCCATAGCTGAAGGCCCCTCATATGCTATTCTTATCTAACTATGTGATTCTAAGCTCAG 3376
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 3377 GTGATCCAAAGAGGCTCCTCAGAGTTGTGGCAAACTGAAGCCAGTGGTGTAGGTTGAAAGGAATCTGAGAGAAG 3450
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 3451 ATCAACACCCAGGAGAATCTAAGGTCCCATTGTGGGTGAATCATTTTGGGCCATGTTTCAGAACAAAATTTCCA 3524
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 3525 CAGACTCACTACCAAATACTCATGGACTTATATTTTTGGTTCAGAGGTTTGATGAAAAACTCTGGAAGCCTATT 3598
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 3599 GCAGAGAACTGAATAAGGTAAAAATCTACCTTTTACTGGACACATCGTTTAGGAAGCAAATTAGTCTCCGTTAT 3672
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 3673 CAGAAAGTTCCAAGGGGGAATCTAAAATGTGATACTTTGCTCAGCAGCTGACAGTATTTTTGCTACATTTTCAA 3746
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 3747 CTTGCCTTCAATTCTGTTTATTTCGCTTGTCTAATTTACTATCTAGGTAATTTAAACAATGAGAATACAGTGAC 3820
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 3821 CCGCAATTTTCCTAATTTAAAGGTATCTCTTCTGCAATATTAAATTTGCATCTACATTGCCTGCCTAACAAGAC 3894
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 3895 TGTCACCTCCTTGAGGTCAATGTGATGTTATCTAATTTTTTAGATAACATCTATGTCTCTAATAGATCTATCTG 3968
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 3969 TGCAATAGAACCATACAGTCCTTCGTAGATAGGGGAAGCACAAATGTTGGTTAATATTTAACAGAGTATCAGAC 4042
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 4043 CTGCATCCTTCTCTCTAAGAGCTCAAACTTCAGAGAGTAGATTCAGAGAGTAAATGTTTTCCCAGGCTCAGGCA 4116
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 4117 AGAGGGGTGGTTTGTATGTTATTTCTTTCTTATTTTCCAGTTAGACTTTTGGAAATCTGCCAGATGCAATTGAA 4190
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 4191 AAACCCTGCTCAGCTTTGTCCAATGTCTCATTTGAGGATCAGCATGAGTTTGTTTACTTGAGATTAACAGGAGT 4264
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 4265 CAAGGATATACAAATTCAGCAATGTATGGATAACTTTCCCCTTTTTAACGCTGGCCTCACCACAAAACTACCAC 4338
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 4339 CATATTGTTGAATTTTGGAAGTTTATTATGCTTTATTTTTTCCTATAAAAAAATAAATGTCATCACATTGTAAT 4412
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 4413 AGTTTTATAACCTGTTTTATCATATTTTAAAATACATCTTGAATATTCTTTCATATAATTAATCTTCTACAGCA 4486
Query 1177 -------------------------------------------------------------------------- 1176
Sbjct 4487 TAATTTTAATATCTATGAAGATTCCATTATGTGCTTGTATTATACATTTTTACTCTGAATACATTATTGTTGTA 4560
Query 1177 --------------------------------------------------- 1176
Sbjct 4561 AACAATGCTTACAATTATGAAAATAAATATATATGGCTCATTTACACATTA 4611
