Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_00314
- Subject:
- NR_135750.1
- Aligned Length:
- 2809
- Identities:
- 1251
- Gaps:
- 1558
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTTCACGAGGAGAGAGAGAGCAGCAGAGGGGACCACGAGGAAGGCAGAGATTCCCTGACGACCTCATGCCTTTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TACACCACTCGCCTTTACTCTCTGGATTAAACAGCATTAGGGAGACAAGAGAGGAAACACATGTGGTGTCTGGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GACCTGTGCCTGCCTGTTCCAGTCCCACACCCAGTCATCTCACCACACCCTTCACCTCACTTTACCTTCTCCTC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CAGCACAGGAACTAGGAACTACGGAGAGAGAAGCCAAGGGAGAGGAGGAGGAGGAAACTAACGATTCCCTGCCC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ACCCCCACACCCAGCACCACCAACAGGTGGGCAAGCTTGCCGAGAAAACGCAGAGGGCATCCTGTGAGCAGCAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACACATCTGAGCCTGGAAAAGACGCAGAGAAGTAAAAGATCAAAGTCTGATTGGCACCGGCTCCCATTCCGGCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CCAGCCTCCAATCCGACCCCCATTTCGGCTGCAGCCTCGGACCTAGCTCCGGCCCTCGGTCTATCCGGTTGCAT 518
Query 1 -----------------------------------------------------------------------ATG 3
|||
Sbjct 519 CCTCCCTCCCTGTTCCGGATCTTATCTTGCGCCAGCGCCTACTCCAGGATCCCGTAGCCAGACCTCAAGCCATG 592
Query 4 GCTGGTCCCTTCTCCCGTCTGCTGTCCGCCCGCCCGGGACTCAGGCTCCTGGCTTTGGCCGGAGCGGGGTCTCT 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GCTGGTCCCTTCTCCCGTCTGCTGTCCGCCCGCCCGGGACTCAGGCTCCTGGCTTTGGCCGGAGCGGGGTCTCT 666
Query 78 AGCCGCTGGGTTTCTGCTCCGACCGGAACCTGTACGAGCTGCCAGTGAACGACGGAGGCTGTATCCCCCGAGCG 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AGCCGCTGGGTTTCTGCTCCGACCGGAACCTGTACGAGCTGCCAGTGAACGACGGAGGCTGTATCCCCCGAGCG 740
Query 152 CTGAGTACCCAGACCTCCGAAAGCACAACAACTGCATGGCCAGTCACCTGACCCCAGCAGTCTATGCACGGCTC 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CTGAGTACCCAGACCTCCGAAAGCACAACAACTGCATGGCCAGTCACCTGACCCCAGCAGTCTATGCACGGCTC 814
Query 226 TGCGACAAGACCACACCCACTGGTTGGACGCTAGATCAGTGTATCCAGACTGGCGTGGACAACCCTGGCCACCC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TGCGACAAGACCACACCCACTGGTTGGACGCTAGATCAGTGTATCCAGACTGGCGTGGACAACCCTGGCCACCC 888
Query 300 CTTCATCAAGACTGTGGGCATGGTGGCTGGAGATGAGGAGACCTATGAGGTATTTGCTGACCTGTTTGACCCTG 373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CTTCATCAAGACTGTGGGCATGGTGGCTGGAGATGAGGAGACCTATGAGGTATTTGCTGACCTGTTTGACCCTG 962
Query 374 TGATCCAAGAGCGACACAATGGATATGACCCCCGGACAATGAAGCACACCACGGATCTAGATGCCAGTAAAATC 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 TGATCCAAGAGCGACACAATGGATATGACCCCCGGACAATGAAGCACACCACGGATCTAGATGCCAGTAAAATC 1036
Query 448 CGTTCTGGCTACTTTGATGAGAGGTATGTATTGTCCTCTAGAGTCAGAACTGGCCGAAGCATCCGAGGACTCAG 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CGTTCTGGCTACTTTGATGAGAGGTATGTATTGTCCTCTAGAGTCAGAACTGGCCGAAGCATCCGAGGACTCAG 1110
Query 522 TCTGCCTCCAGCTTGCACTCGAGCAGAGCGACGAGAGGTGGAACGTGTTGTGGTGGATGCACTGAGTGGCCTGA 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TCTGCCTCCAGCTTGCACTCGAGCAGAGCGACGAGAGGTGGAACGTGTTGTGGTGGATGCACTGAGTGGCCTGA 1184
Query 596 AGGGTGACCTGGCTGGACGTTACTATAGGCTCAGTGAGATGACAGAGGCTGAACAGCAGCAGCTTATTGATGAC 669
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 AGGGTGACCTGGCTGGACGTTACTATAGGCTCAGTGAGATGACAGAGGCTGAACAGCAGCAGCTTATTGATGAC 1258
Query 670 CACTTTCTGTTTGATAAGCCTGTGTCCCCGTTGCTGACTGCAGCAGGAATGGCTCGAGACTGGCCAGATGCTCG 743
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 CACTTTCTGTTTGATAAGCCTGTGTCCCCGTTGCTGACTGCAGCAGGAATGGCTCGAGACTGGCCAGATGCTCG 1332
Query 744 TGGAATTTGGCACAACAATGAGAAGAGCTTCCTGATCTGGGTGAATGAGGAGGATCATACACGGGTGATCTCCA 817
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TGGAATTTGGCACAACAATGAGAAGAGCTTCCTGATCTGGGTGAATGAGGAGGATCATACACGGGTGATCTCCA 1406
Query 818 TGGAGAAGGGTGGTAACATGAAGAGAGTGTTTGAAAGATTCTGCCGAGGCCTCAAAG----------------- 874
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 TGGAGAAGGGTGGTAACATGAAGAGAGTGTTTGAAAGATTCTGCCGAGGCCTCAAAGAGGTTGTTGTGGGGATT 1480
Query 875 -------------------------------------------------------------------------- 874
Sbjct 1481 AAGTGAAATACAGGTAAAGTACTTGGTCCACAGTAAGTGCTTAATAAGTGTTAAAGTGTTAGCTGCAATATTAT 1554
Query 875 -------------------------------------------------------------------------- 874
Sbjct 1555 TCTGGATGGAAGAGTTTCCCCCCATGTTCAGCATGTAAGATATCCCCTATGGCATGGTTCCTTCTGAACTATAA 1628
Query 875 -------------------------------------------------------------------------- 874
Sbjct 1629 AGAGGATCCCTTTACTCATGTTGGGTTGTGGTCTTTGTGACCATCATTCTGCTAGATCCCTTGTCTCTTGAACT 1702
Query 875 -------------------------------------------------------------------------- 874
Sbjct 1703 CTAATAGTCATCTTCATGACTACATGGTTAAGTGAAGCCAAACGCCTTCCCCCCGCCCCCTATTCCTATGAATC 1776
Query 875 -------------------------------------------------------------------------- 874
Sbjct 1777 TGGCTTTTCTGCTCTGTTTTCATCTTTCTCTGCATTCACACAGGTGCTCCGTTCACAGCTAACAGAATGTTATC 1850
Query 875 -------------------------------------------------------------------------- 874
Sbjct 1851 TTACCTCTTCCTGGCAAAGCTTACACCTTCATCTTCTGTCTGAAGGGACCCTTCTAAGCTCTAGGCTCATTAGC 1924
Query 875 -------------------------------------------------------------------------- 874
Sbjct 1925 AAAGCAAAGATAATCGATGCATGCAGACCTCATTGAATAATCAGTCATCTCTCAGTTCAGTTTACCACCTCTGT 1998
Query 875 -------------------------------------------------------------------------- 874
Sbjct 1999 TCATTTCCCTAGATCATCCTTAATACACCACTCCTTCGAGTTTTCTTCTTCCACATAAGATATTTTTTCACAAT 2072
Query 875 -------------------------------------------------------------------------- 874
Sbjct 2073 CTCATTATTATGCACATCATAATTTTGCATCATGCATGCATGAAAACAATAACAAACCTTTTTCATTTAAAAAA 2146
Query 875 -------------------------------------------------------------------------- 874
Sbjct 2147 AGACCAATGTCATTCATTCACAGCCAAGTTTCTGTTCTAGACATATTTCTAGTGTTCTTGTGGGTCTAGCTAAG 2220
Query 875 ------------------------------------------------------------AGGTGGAGAGACTT 888
||||||||||||||
Sbjct 2221 GGAGGGTCCAGGGTTAATGAAATATCCCTGATTTTTCGTTAACAAAACCTTTGTGGACTCAGGTGGAGAGACTT 2294
Query 889 ATCCAAGAACGTGGCTGGGAGTTCATGTGGAATGAGCGTTTGGGATACATCTTGACCTGTCCATCTAACCTGGG 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295 ATCCAAGAACGTGGCTGGGAGTTCATGTGGAATGAGCGTTTGGGATACATCTTGACCTGTCCATCTAACCTGGG 2368
Query 963 CACTGGACTTCGGGCAGGAGTGCACATCAAACTGCCCCTGCTAAGCAAAGATAGCCGCTTCCCAAAGATCCTGG 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 CACTGGACTTCGGGCAGGAGTGCACATCAAACTGCCCCTGCTAAGCAAAGATAGCCGCTTCCCAAAGATCCTGG 2442
Query 1037 AGAACCTAAGACTCCAAAAACGTGGTACTGGAGGAGTGGACACTGCTGCTACAGGCGGTGTCTTTGATATTTCT 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443 AGAACCTAAGACTCCAAAAACGTGGTACTGGAGGAGTGGACACTGCTGCTACAGGCGGTGTCTTTGATATTTCT 2516
Query 1111 AATTTGGACCGACTAGGCAAATCAGAGGTGGAGCTGGTGCAACTGGTCATCGATGGAGTAAACTATTTGATTGA 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 AATTTGGACCGACTAGGCAAATCAGAGGTGGAGCTGGTGCAACTGGTCATCGATGGAGTAAACTATTTGATTGA 2590
Query 1185 TTGTGAACGGCGTCTGGAGAGAGGCCAGGATATCCGCATCCCCACACCTGTCATCCACACCAAGCAT------- 1251
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 TTGTGAACGGCGTCTGGAGAGAGGCCAGGATATCCGCATCCCCACACCTGTCATCCACACCAAGCATTAACTCC 2664
Query 1252 -------------------------------------------------------------------------- 1251
Sbjct 2665 CCATCGCCAGCTGATGACTCAAGATTCCCAGGAGTTCTGCTCATTCTAATGATGGCCCATTCTACTTGCTCTGG 2738
Query 1252 ----------------------------------------------------------------------- 1251
Sbjct 2739 ACCTGCCCCCGCATCCCCTGCCTCCATCCTAGTAAAGACTCCTTGCTATGCTGCAAAAAAAAAAAAAAAAA 2809
