Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_00411
- Subject:
- NR_033807.3
- Aligned Length:
- 3332
- Identities:
- 1359
- Gaps:
- 1831
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCTGTGCAGGGCAGGGAAGCTCCAGGCAAACAGCCCAGCAAACAGCAGCACTCAGCTAAAAGGAAGACTCACAG 74
Query 1 --------------------------ATGGCTCTCATCCCAGACTTGGCCATGGAAACCTGGCTTCTCCTGGCT 48
||||..|||||||||.|.|||||..|||||||||||||||||||||||
Sbjct 75 AACACAGTTGAAGAAGGAAAGTGGCGATGGACCTCATCCCAAATTTGGCGGTGGAAACCTGGCTTCTCCTGGCT 148
Query 49 GTCAGCCTGGTGCTCCTCTATCT--------------------------------------------------- 71
|||||||||||||||||||||||
Sbjct 149 GTCAGCCTGGTGCTCCTCTATCTGATGAGAGTCCCCAAATCAGCGAAGAGTCCACTTACTAAACAGACATAAGG 222
Query 72 -------------------------------------------------------------------------- 71
Sbjct 223 AAATGAAGTGTCCTGGAAGAATTCCTGCCTGAACCTCTCAGGAGCATTTGAGGACATTTATCAAGTATTCACTC 296
Query 72 -------------------------------------------------------------------------- 71
Sbjct 297 CAGGATTGGGACTATGAAGACTTCAGCTGCTTTCAGCTAATCATTGAGACTTTTCAGGGGTCTCAGAATAGTCA 370
Query 72 -------------------------------------------------------------------------- 71
Sbjct 371 GGAAAGGACCTGATGAGTGAATGCAATTACTGATGTTGGAGTTGCTGTTATTATTTATCGTGTACATATTACCT 444
Query 72 -------------------------------------------------------------------------- 71
Sbjct 445 CCCTCTCTTGACCATTCCAGTTCCTGAGTAACTCACCAGCCCTCTGATCTATAAAGTCACAATCCCTGTGACCT 518
Query 72 ---------------------ATATGGAACCCATTCACATGGACTTTTTAAGAAGCTTGGAATTCCAGGGCCCA 124
||||||.||||.|.||||||||||||||||||..||.||||||||||||||||
Sbjct 519 GATTTCTGTTTCACTTTGTAGATATGGGACCCGTACACATGGACTTTTTAAGAGACTGGGAATTCCAGGGCCCA 592
Query 125 CACCTCTGCCTTTTTTGGGAAATATTTTGTCCTACCATAAGGGCTTTTGTATGTTTGACATGGAATGTCATAAA 198
|||||||||||||.|||||||||.||||||||||.|.|.||||..|.||.|..|||||||..||.||..|||||
Sbjct 593 CACCTCTGCCTTTGTTGGGAAATGTTTTGTCCTATCGTCAGGGTCTCTGGAAATTTGACACAGAGTGCTATAAA 666
Query 199 AAGTATGGAAAAGTGTGGGG-----CTT---------------------------------------------- 221
||||||||||||.||||||| |||
Sbjct 667 AAGTATGGAAAAATGTGGGGTATCTCTTCCCTGTTTGGACCACATTACCCTTCATCATATGAAGCCTTGGGTGG 740
Query 222 -------------------------------------------------------------------------- 221
Sbjct 741 CTCCTGTGTGAGACTCTTGCTGTGTGTCACACCCTAATGAACTAGAACCTAAGGTTGCTGTGTGTCGTACAACT 814
Query 222 --------------------------TTATGATGGTCAACAGCCTGTGCTGGCTATCACAGATCCTGACATGAT 269
.|||||.|||||||..|||||||||||.|||||||||||.|||.||||
Sbjct 815 AGGGCTCCGTTGTCCCCACACAGAACGTATGAAGGTCAACTCCCTGTGCTGGCCATCACAGATCCCGACGTGAT 888
Query 270 CAAAACAGTGCTAGTGAAAGAATGTTATTCTGTCTTCACAAACCGGAGGCCTTTTGGTCCAGTGGGATTTATGA 343
||.|||||||||||||||||||||||||||||||||||||||.||.|||.||||.||.||||||||||||||||
Sbjct 889 CAGAACAGTGCTAGTGAAAGAATGTTATTCTGTCTTCACAAATCGAAGGTCTTTAGGCCCAGTGGGATTTATGA 962
Query 344 AAAGTGCCATCTCTATAGCTGAGGATGAAGAATGGAAGAGATTACGATCATTGCTGTCTCCAACCTTCACCAGT 417
||||||||||||||.||||||||||||||||||||||||||.||||.||||||||||||||||||||||||||.
Sbjct 963 AAAGTGCCATCTCTTTAGCTGAGGATGAAGAATGGAAGAGAATACGGTCATTGCTGTCTCCAACCTTCACCAGC 1036
Query 418 GGAAAACTCAAGGAGATGGTCCCTATCATTGCCCAGTATGGAGATGTGTTGGTGAGAAATCTGAGGCGGGAAGC 491
||||||||||||||||||.||||.|||||||||||||||||||||||.|||||||||||..|||||||||||||
Sbjct 1037 GGAAAACTCAAGGAGATGTTCCCCATCATTGCCCAGTATGGAGATGTATTGGTGAGAAACTTGAGGCGGGAAGC 1110
Query 492 AGAGACAGGCAAGCCTGTCACCTTGAAAGACGTCTTTGGGGCCTACAGCATGGATGTGATCACTAGCACATCAT 565
|||||.|||||||||||||||||||||||||.||||||||||||||||||||||||||||.|||.|||||||||
Sbjct 1111 AGAGAAAGGCAAGCCTGTCACCTTGAAAGACATCTTTGGGGCCTACAGCATGGATGTGATTACTGGCACATCAT 1184
Query 566 TTGGAGTGAACATCGACTCTCTCAACAATCCACAAGACCCCTTTGTGGAAAACACCAAGAAGCTTTTAAGATTT 639
|||||||||||||||||||||||||||||||||||||||||||||||||.|.|||.||||||.|..|||.||||
Sbjct 1185 TTGGAGTGAACATCGACTCTCTCAACAATCCACAAGACCCCTTTGTGGAGAGCACTAAGAAGTTCCTAAAATTT 1258
Query 640 GATTTTTTGGATCCATTCTTTCTCTCAATAACAGTCTTTCCATTCCTCATCCCAATTCTTGAAGTATTAAATAT 713
|.|||.||.||||||||.|||||||||||||.|.|||||||||||||.|.||||.||.||||||.|||||||.|
Sbjct 1259 GGTTTCTTAGATCCATTATTTCTCTCAATAATACTCTTTCCATTCCTTACCCCAGTTTTTGAAGCATTAAATGT 1332
Query 714 CTGTGTGTTTCCAAGAGAAGTTAC---AAATTTTTTAAGAAAATCTGTAAAAAGGATGAAAGAAAGTCGCCTC- 783
||.|.||||||||| |||.||| ||||||||||||.|||||||||||.||.|||||..|||||||||||
Sbjct 1333 CTCTCTGTTTCCAA---AAGATACCATAAATTTTTTAAGTAAATCTGTAAACAGAATGAAGAAAAGTCGCCTCA 1403
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1404 ACGACAAACAAAAGGTAAAATCTGATGGTGGTTAAATGACGATGTTTAGGTTTTGATAAATTTAGATTTTATAC 1477
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1478 ACATGATAGAGCATGTATCTGTATTTTTAAAAATAAAGACAGAGAACTTATGTTTAGAACAAGAGAAGCCATTT 1551
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1552 GGTAGAAATAAAGAAGGAGATTGGGGAAGGAGATGAGAATGAGTCAGAGAGATAGCATTTAAAACTTGAAATCA 1625
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1626 GGCACAACAATTAGTATGTCATGATATAAACAGTATTGAGATAAAATTTTACCACTTCTCTTCCCTTTAATAAA 1699
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1700 TTGTCAAAGGATAAAGTTTCCTGTTTGAAAATATATTTTACTGGTATTGTGCTTTCCTCATATCACAGATTGGT 1773
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1774 AAAGAATCATTTTAAGTCCAAGACTCTTATTTTACATATTCTGCAATTAAAGGTCCTATGAGGCTACCTGCCGA 1847
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1848 CTGCTGACATGTAGTGTGTGGTAAATGTGAGTGTTTCACAGCCTGGAGTGAACAGGGGTCTTCTCTGAGAATTG 1921
Query 784 -------------------------------------------------------------------------- 783
Sbjct 1922 AGGTTGCAAGGCTGGCTAACTCAGCTTTGCCTTCACGAGCCCTAGAGGCCAGCCGAAGGATGTCTGCAGGTCAG 1995
Query 784 -------------------------------GAAGAT------------------------------------- 789
||||||
Sbjct 1996 GGAGACAGGACCAGGTAACCCAGCTGTCACTGAAGATTATATAGAGTTTGAGAATGTTGGAATATTTGAAAATG 2069
Query 790 ---------------------------------------------------------ACAC--------AAA-- 796
|||| |||
Sbjct 2070 CTCCCCCAAAAAAGCTGCTGATGAGTTCTGGAAATGTCAGGAGATTAATCTATACGGACACTGCTGAAGAAAAA 2143
Query 797 -------------------------------------------------------------------------- 796
Sbjct 2144 GGTAGAAGAATAAAAGATCCAGTACTTCTTCCTGGGTAAGCAGTTATGACCAGAGATGGAACCGGCAACTCTTT 2217
Query 797 -------------------------------------------------------------------------- 796
Sbjct 2218 GGCCAGAAAGCTGTATCCAAAAGACAGAGAAGATGAGAAACAGGGAGGGCAAAGGCGAAAAAGCAATTGGACAT 2291
Query 797 -------------------------------------------------------------------------- 796
Sbjct 2292 GATAGCTAGATTTGTTTCAGGAAAACATCCTGCTTTCCAAGGATTTAGATGAATGTTTTTGTTCACTGGTGACT 2365
Query 797 -------------------------------------------------------------------------- 796
Sbjct 2366 CAGGTAACACGTCTTCAAGAAGCCATAGGGAGGTTGAGGGAGGGAAGTCAAGAAGGGAGGTTGAGGACTGCACT 2439
Query 797 -------------------------------------------------------------AGCACCGAGTGGA 809
||||||||.|.||
Sbjct 2440 TTTGATTTACTTCTGACTTCACGAGTCACTTTCTGCCAAAGAAATCTCTCCTTTTGCTTCTAGCACCGACTAGA 2513
Query 810 TTTCCTTCAGCTGATGATTGACTCTCAGAATTCAAAAGAAACTGAGTCCCACAAAGCTCTGTCCGATCTGGAGC 883
||||||||||||||||||||||||.||||||||.|||||||||||||||||||||||||||||.||||||||||
Sbjct 2514 TTTCCTTCAGCTGATGATTGACTCCCAGAATTCGAAAGAAACTGAGTCCCACAAAGCTCTGTCTGATCTGGAGC 2587
Query 884 TCGTGGCCCAATCAATTATCTTTATTTTTGCTGGCTATGAAACCACGAGCAGTGTTCTCTCCTTCATTATGTAT 957
|||..|||||.|||||.|||||.|||||||||||||||||||||||.|||||||||||.|||||||.|.|.|||
Sbjct 2588 TCGCAGCCCAGTCAATAATCTTCATTTTTGCTGGCTATGAAACCACCAGCAGTGTTCTTTCCTTCACTTTATAT 2661
Query 958 GAACTGGCCACTCACCCTGATGTCCAGCAGAAACTGCAGGAGGAAATTGATGCAGTTTTACCCAATAAGGCACC 1031
||||||||||||||||||||||||||||||||||||||..||||.||||||||||||||.||||||||||||||
Sbjct 2662 GAACTGGCCACTCACCCTGATGTCCAGCAGAAACTGCAAAAGGAGATTGATGCAGTTTTGCCCAATAAGGCACC 2735
Query 1032 ACCCACCTATGATACTGTGCTACAGATGGAGTATCTTGACATGGTGGTGAATGAAACGCTCAGATTATTCCCAA 1105
|||.|||||||||.|.|||.|||||||||||||.|||||||||||||||||||||||.|||||||||||||||.
Sbjct 2736 ACCTACCTATGATGCCGTGGTACAGATGGAGTACCTTGACATGGTGGTGAATGAAACACTCAGATTATTCCCAG 2809
Query 1106 TTGCTATGAGACTTGAGAGGGTCTGCAAAAAAGATGTTGAGATCAATGGGATGTTCATTCCCAAAGGGGTGGTG 1179
|||||||.||||||||||||...|||||.|||||||||||.|||||||||.|.|||||||||||||||....||
Sbjct 2810 TTGCTATTAGACTTGAGAGGACTTGCAAGAAAGATGTTGAAATCAATGGGGTATTCATTCCCAAAGGGTCAATG 2883
Query 1180 GTGATGATTCCAAGCTATGCTCTTCACCGTGACCCAAAGTACTGGACAGAGCCTGAGAAGTTCCTCCCTGAAAG 1253
|||.|||||||||..|||||||||||||.||||||||||||||||||||||||||||.||||||.|||||||||
Sbjct 2884 GTGGTGATTCCAACTTATGCTCTTCACCATGACCCAAAGTACTGGACAGAGCCTGAGGAGTTCCGCCCTGAAAG 2957
Query 1254 ATTCAGCAAGAAGAACAAGGACAACATAGATCCTTACATATACACACCCTTTGGAAGTGGACCCAGAAACTGCA 1327
.|||||.|||||| |||||||.||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 2958 GTTCAGTAAGAAG---AAGGACAGCATAGATCCTTACATATACACACCCTTTGGAACTGGACCCAGAAACTGCA 3028
Query 1328 TTGGCATGAGGTTTGCTCTCATGAACATGAAACTTGCTCTAATCAGAGTCCTTCAGAACTTCTCCTTCAAACCT 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3029 TTGGCATGAGGTTTGCTCTCATGAACATGAAACTTGCTCTAATCAGAGTCCTTCAGAACTTCTCCTTCAAACCT 3102
Query 1402 TGTAAAGAAACACAGATCCCCCTGAAATTAAGCTTAGG--AGGACTTCTTCAACCAGAAAAACCCGTTGTTCTA 1473
|||||||||||||||||||||.||||||||..| |.| |||||||||||||||||||||||||.||||||||
Sbjct 3103 TGTAAAGAAACACAGATCCCCTTGAAATTAGAC--ACGCAAGGACTTCTTCAACCAGAAAAACCCATTGTTCTA 3174
Query 1474 AAGGTTGAGTCAAGGGATGGCACCGTAAGTGGAGCC-------------------------------------- 1509
|||||.||.|||||.|||||.|||.|||||||||..
Sbjct 3175 AAGGTGGATTCAAGAGATGGAACCCTAAGTGGAGAATGAGTTATTCTAAGGATTTCTACTTTGGTCTTCAAGAA 3248
Query 1510 -------------------------------------------------------------------------- 1509
Sbjct 3249 AGCTGTGCCCCAGAACACCAGAGATTTCAACTTAGTCAATAAAACCTTGAAATAAAGATGGGCTTAATCTAATG 3322
Query 1510 -- 1509
Sbjct 3323 TA 3324
