Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_00412
- Subject:
- NR_033807.3
- Aligned Length:
- 3324
- Identities:
- 1506
- Gaps:
- 1818
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCTGTGCAGGGCAGGGAAGCTCCAGGCAAACAGCCCAGCAAACAGCAGCACTCAGCTAAAAGGAAGACTCACAG 74
Query 1 --------------------------ATGGACCTCATCCCAAATTTGGCGGTGGAAACCTGGCTTCTCCTGGCT 48
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 AACACAGTTGAAGAAGGAAAGTGGCGATGGACCTCATCCCAAATTTGGCGGTGGAAACCTGGCTTCTCCTGGCT 148
Query 49 GTCAGCCTGGTGCTCCTCTATCT--------------------------------------------------- 71
|||||||||||||||||||||||
Sbjct 149 GTCAGCCTGGTGCTCCTCTATCTGATGAGAGTCCCCAAATCAGCGAAGAGTCCACTTACTAAACAGACATAAGG 222
Query 72 -------------------------------------------------------------------------- 71
Sbjct 223 AAATGAAGTGTCCTGGAAGAATTCCTGCCTGAACCTCTCAGGAGCATTTGAGGACATTTATCAAGTATTCACTC 296
Query 72 -------------------------------------------------------------------------- 71
Sbjct 297 CAGGATTGGGACTATGAAGACTTCAGCTGCTTTCAGCTAATCATTGAGACTTTTCAGGGGTCTCAGAATAGTCA 370
Query 72 -------------------------------------------------------------------------- 71
Sbjct 371 GGAAAGGACCTGATGAGTGAATGCAATTACTGATGTTGGAGTTGCTGTTATTATTTATCGTGTACATATTACCT 444
Query 72 -------------------------------------------------------------------------- 71
Sbjct 445 CCCTCTCTTGACCATTCCAGTTCCTGAGTAACTCACCAGCCCTCTGATCTATAAAGTCACAATCCCTGTGACCT 518
Query 72 ---------------------ATATGGGACCCGTACACATGGACTTTTTAAGAGACTGGGAATTCCAGGGCCCA 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GATTTCTGTTTCACTTTGTAGATATGGGACCCGTACACATGGACTTTTTAAGAGACTGGGAATTCCAGGGCCCA 592
Query 125 CACCTCTGCCTTTGTTGGGAAATGTTTTGTCCTATCGTCAGGGTCTCTGGAAATTTGACACAGAGTGCTATAAA 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CACCTCTGCCTTTGTTGGGAAATGTTTTGTCCTATCGTCAGGGTCTCTGGAAATTTGACACAGAGTGCTATAAA 666
Query 199 AAGTATGGAAAAATGTGGG------------------------------------------------------- 217
|||||||||||||||||||
Sbjct 667 AAGTATGGAAAAATGTGGGGTATCTCTTCCCTGTTTGGACCACATTACCCTTCATCATATGAAGCCTTGGGTGG 740
Query 218 -------------------------------------------------------------------------- 217
Sbjct 741 CTCCTGTGTGAGACTCTTGCTGTGTGTCACACCCTAATGAACTAGAACCTAAGGTTGCTGTGTGTCGTACAACT 814
Query 218 ----------------------GAACGTATGAAGGTCAACTCCCTGTGCTGGCCATCACAGATCCCGACGTGAT 269
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AGGGCTCCGTTGTCCCCACACAGAACGTATGAAGGTCAACTCCCTGTGCTGGCCATCACAGATCCCGACGTGAT 888
Query 270 CAGAACAGTGCTAGTGAAAGAATGTTATTCTGTCTTCACAAATCGAAGGTCTTTAGGCCCAGTGGGATTTATGA 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CAGAACAGTGCTAGTGAAAGAATGTTATTCTGTCTTCACAAATCGAAGGTCTTTAGGCCCAGTGGGATTTATGA 962
Query 344 AAAGTGCCATCTCTTTAGCTGAGGATGAAGAATGGAAGAGAATACGGTCATTGCTGTCTCCAACCTTCACCAGC 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AAAGTGCCATCTCTTTAGCTGAGGATGAAGAATGGAAGAGAATACGGTCATTGCTGTCTCCAACCTTCACCAGC 1036
Query 418 GGAAAACTCAAGGAGATGTTCCCCATCATTGCCCAGTATGGAGATGTATTGGTGAGAAACTTGAGGCGGGAAGC 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GGAAAACTCAAGGAGATGTTCCCCATCATTGCCCAGTATGGAGATGTATTGGTGAGAAACTTGAGGCGGGAAGC 1110
Query 492 AGAGAAAGGCAAGCCTGTCACCTTGAAAGACATCTTTGGGGCCTACAGCATGGATGTGATTACTGGCACATCAT 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AGAGAAAGGCAAGCCTGTCACCTTGAAAGACATCTTTGGGGCCTACAGCATGGATGTGATTACTGGCACATCAT 1184
Query 566 TTGGAGTGAACATCGACTCTCTCAACAATCCACAAGACCCCTTTGTGGAGAGCACTAAGAAGTTCCTAAAATTT 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TTGGAGTGAACATCGACTCTCTCAACAATCCACAAGACCCCTTTGTGGAGAGCACTAAGAAGTTCCTAAAATTT 1258
Query 640 GGTTTCTTAGATCCATTATTTCTCTCAATAATACTCTTTCCATTCCTTACCCCAGTTTTTGAAGCATTAAATGT 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 GGTTTCTTAGATCCATTATTTCTCTCAATAATACTCTTTCCATTCCTTACCCCAGTTTTTGAAGCATTAAATGT 1332
Query 714 CTCTCTGTTTCCAAAAGATACCATAAATTTTTTAAGTAAATCTGTAAACAGAATGAAGAAAAGTCGCCTCAACG 787
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 CTCTCTGTTTCCAAAAGATACCATAAATTTTTTAAGTAAATCTGTAAACAGAATGAAGAAAAGTCGCCTCAACG 1406
Query 788 ACAAACAAA----------------------------------------------------------------- 796
|||||||||
Sbjct 1407 ACAAACAAAAGGTAAAATCTGATGGTGGTTAAATGACGATGTTTAGGTTTTGATAAATTTAGATTTTATACACA 1480
Query 797 -------------------------------------------------------------------------- 796
Sbjct 1481 TGATAGAGCATGTATCTGTATTTTTAAAAATAAAGACAGAGAACTTATGTTTAGAACAAGAGAAGCCATTTGGT 1554
Query 797 -------------------------------------------------------------------------- 796
Sbjct 1555 AGAAATAAAGAAGGAGATTGGGGAAGGAGATGAGAATGAGTCAGAGAGATAGCATTTAAAACTTGAAATCAGGC 1628
Query 797 -------------------------------------------------------------------------- 796
Sbjct 1629 ACAACAATTAGTATGTCATGATATAAACAGTATTGAGATAAAATTTTACCACTTCTCTTCCCTTTAATAAATTG 1702
Query 797 -------------------------------------------------------------------------- 796
Sbjct 1703 TCAAAGGATAAAGTTTCCTGTTTGAAAATATATTTTACTGGTATTGTGCTTTCCTCATATCACAGATTGGTAAA 1776
Query 797 -------------------------------------------------------------------------- 796
Sbjct 1777 GAATCATTTTAAGTCCAAGACTCTTATTTTACATATTCTGCAATTAAAGGTCCTATGAGGCTACCTGCCGACTG 1850
Query 797 -------------------------------------------------------------------------- 796
Sbjct 1851 CTGACATGTAGTGTGTGGTAAATGTGAGTGTTTCACAGCCTGGAGTGAACAGGGGTCTTCTCTGAGAATTGAGG 1924
Query 797 -------------------------------------------------------------------------- 796
Sbjct 1925 TTGCAAGGCTGGCTAACTCAGCTTTGCCTTCACGAGCCCTAGAGGCCAGCCGAAGGATGTCTGCAGGTCAGGGA 1998
Query 797 -------------------------------------------------------------------------- 796
Sbjct 1999 GACAGGACCAGGTAACCCAGCTGTCACTGAAGATTATATAGAGTTTGAGAATGTTGGAATATTTGAAAATGCTC 2072
Query 797 -------------------------------------------------------------------------- 796
Sbjct 2073 CCCCAAAAAAGCTGCTGATGAGTTCTGGAAATGTCAGGAGATTAATCTATACGGACACTGCTGAAGAAAAAGGT 2146
Query 797 -------------------------------------------------------------------------- 796
Sbjct 2147 AGAAGAATAAAAGATCCAGTACTTCTTCCTGGGTAAGCAGTTATGACCAGAGATGGAACCGGCAACTCTTTGGC 2220
Query 797 -------------------------------------------------------------------------- 796
Sbjct 2221 CAGAAAGCTGTATCCAAAAGACAGAGAAGATGAGAAACAGGGAGGGCAAAGGCGAAAAAGCAATTGGACATGAT 2294
Query 797 -------------------------------------------------------------------------- 796
Sbjct 2295 AGCTAGATTTGTTTCAGGAAAACATCCTGCTTTCCAAGGATTTAGATGAATGTTTTTGTTCACTGGTGACTCAG 2368
Query 797 -------------------------------------------------------------------------- 796
Sbjct 2369 GTAACACGTCTTCAAGAAGCCATAGGGAGGTTGAGGGAGGGAAGTCAAGAAGGGAGGTTGAGGACTGCACTTTT 2442
Query 797 ----------------------------------------------------------AGCACCGACTAGATTT 812
||||||||||||||||
Sbjct 2443 GATTTACTTCTGACTTCACGAGTCACTTTCTGCCAAAGAAATCTCTCCTTTTGCTTCTAGCACCGACTAGATTT 2516
Query 813 CCTTCAGCTGATGATTGACTCCCAGAATTCGAAAGAAACTGAGTCCCACAAAGCTCTGTCTGATCTGGAGCTCG 886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 CCTTCAGCTGATGATTGACTCCCAGAATTCGAAAGAAACTGAGTCCCACAAAGCTCTGTCTGATCTGGAGCTCG 2590
Query 887 CAGCCCAGTCAATAATCTTCATTTTTGCTGGCTATGAAACCACCAGCAGTGTTCTTTCCTTCACTTTATATGAA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2591 CAGCCCAGTCAATAATCTTCATTTTTGCTGGCTATGAAACCACCAGCAGTGTTCTTTCCTTCACTTTATATGAA 2664
Query 961 CTGGCCACTCACCCTGATGTCCAGCAGAAACTGCAAAAGGAGATTGATGCAGTTTTGCCCAATAAGGCACCACC 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2665 CTGGCCACTCACCCTGATGTCCAGCAGAAACTGCAAAAGGAGATTGATGCAGTTTTGCCCAATAAGGCACCACC 2738
Query 1035 TACCTATGATGCCGTGGTACAGATGGAGTACCTTGACATGGTGGTGAATGAAACACTCAGATTATTCCCAGTTG 1108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2739 TACCTATGATGCCGTGGTACAGATGGAGTACCTTGACATGGTGGTGAATGAAACACTCAGATTATTCCCAGTTG 2812
Query 1109 CTATTAGACTTGAGAGGACTTGCAAGAAAGATGTTGAAATCAATGGGGTATTCATTCCCAAAGGGTCAATGGTG 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2813 CTATTAGACTTGAGAGGACTTGCAAGAAAGATGTTGAAATCAATGGGGTATTCATTCCCAAAGGGTCAATGGTG 2886
Query 1183 GTGATTCCAACTTATGCTCTTCACCATGACCCAAAGTACTGGACAGAGCCTGAGGAGTTCCGCCCTGAAAGGTT 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2887 GTGATTCCAACTTATGCTCTTCACCATGACCCAAAGTACTGGACAGAGCCTGAGGAGTTCCGCCCTGAAAGGTT 2960
Query 1257 CAGTAAGAAGAAGGACAGCATAGATCCTTACATATACACACCCTTTGGAACTGGACCCAGAAACTGCATTGGCA 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2961 CAGTAAGAAGAAGGACAGCATAGATCCTTACATATACACACCCTTTGGAACTGGACCCAGAAACTGCATTGGCA 3034
Query 1331 TGAGGTTTGCTCTCATGAACATGAAACTTGCTCTAATCAGAGTCCTTCAGAACTTCTCCTTCAAACCTTGTAAA 1404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3035 TGAGGTTTGCTCTCATGAACATGAAACTTGCTCTAATCAGAGTCCTTCAGAACTTCTCCTTCAAACCTTGTAAA 3108
Query 1405 GAAACACAGATCCCCTTGAAATTAGACACGCAAGGACTTCTTCAACCAGAAAAACCCATTGTTCTAAAGGTGGA 1478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3109 GAAACACAGATCCCCTTGAAATTAGACACGCAAGGACTTCTTCAACCAGAAAAACCCATTGTTCTAAAGGTGGA 3182
Query 1479 TTCAAGAGATGGAACCCTAAGTGGAGAA---------------------------------------------- 1506
||||||||||||||||||||||||||||
Sbjct 3183 TTCAAGAGATGGAACCCTAAGTGGAGAATGAGTTATTCTAAGGATTTCTACTTTGGTCTTCAAGAAAGCTGTGC 3256
Query 1507 -------------------------------------------------------------------- 1506
Sbjct 3257 CCCAGAACACCAGAGATTTCAACTTAGTCAATAAAACCTTGAAATAAAGATGGGCTTAATCTAATGTA 3324
