Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_00448
- Subject:
- NM_001177779.1
- Aligned Length:
- 2555
- Identities:
- 1314
- Gaps:
- 1123
Alignment
Query 1 ATGCACAAGCACCAGCACTGCTGTAAGTGCCCTGAGTGCTATGAGGTGACCCGCCTGGCCGCCCTGCGGCGCCT 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 CGAGCCTCCGGGCTACGGCGACTGGCAAGTCCCCGACCCTTACGGGCCAGGTGGGGGCAACGGCGCCAGCGCGG 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 GTTATGGGGGCTACAGCTCGCAGACCTTGCCCTCGCAGGCGGGGGCCACCCCCACCCCTCGCACCAAGGCCAAG 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 CTCATCCCCACCGGCCGGGATGTGGGGCCGGTGCCTCCTAAGCCAGTCCCGGGCAAGAGCACCCCCAAACTCAA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 CGGCAGCGGCCCCAGCTGGTGGCCAGAGTGCACCTGTACCAACCGGGACTGGTATGAGCAGGTGAATGGCAGTG 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 ATGGCATGTTCAAATATGAGGAAATCGTACTTGAGAGGGGCAACTCTGGCCTGGGCTTCAGTATCGCAGGTGGC 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 ATCGACAATCCCCATGTCCCTGATGACCCTGGCATCTTTATTACCAAGATTATCCCTGGTGGAGCAGCTGCCAT 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 GGATGGGAGGCTGGGGGTGAATGACTGTGTGCTGCGGGTGAATGAGGTGGACGTGTCGGAGGTGGTACACAGCC 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 GGGCGGTGGAGGCGCTGAAGGAGGCAGGCCCTGTGGTGCGATTGGTGGTGCGGAGGCGACAGCCTCCACCCGAG 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 ACCATCATGGAGGTCAACCTGCTCAAAGGGCCCAAAGGCCTGGGTTTCAGCATTGCTGGGGGTATTGGCAACCA 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 GCACATCCCAGGAGACAACAGCATCTACATCACCAAGATCATTGAGGGGGGTGCTGCTCAGAAGGATGGACGCC 814
||||
Sbjct 1 -----------------------------------------------------------------ATGG----- 4
Query 815 TACAGATTGGGGACCGGCTGCTGGCGGTGAACAACACCAATCTGCAGGATGTGAGGCACGAGGAAGCTGTGGCC 888
||| ||||| .|||.|.|.|.||||.| ||||| |||||
Sbjct 5 ---AGA--------CGGCT-----------------------CGCAAGTTCTCAGGCTC----AAGCT-TGGCC 39
Query 889 TCACTGAAGAACACATCTGATATGGTGTATTTGAAGGTGGCCAAGCCAGGCAGCCTCCACCTCAACGACATGTA 962
||| |.|.|||
Sbjct 40 ---CTG------------GGTTTGG------------------------------------------------- 49
Query 963 CGCTCCCCCTGACTACGCCAGCACTTTTACTGCCTTGGCTGACAACCACATAAGCCATAATTCCAGCCTGGGTT 1036
||||..||| |||| |.||||||||...
Sbjct 50 -GCTCGGCCT-------------------CTGC----------------------------TTCAGCCTGGAGG 75
Query 1037 ATCTCGGGGCTGTGGAGAGCAAGGTCAGCTACCCT----GCTCCTCCTCAGGTTCCCCCCACCCGCTACTCTCC 1106
| |||||..|.||||...|| ||| ||||| ||||||
Sbjct 76 A-----GGGCTTCGCAGAGGTGGG--------CCTGGCCGCTCC-------GTTCCC----------------- 112
Query 1107 TATTCCCAGGCACATGCTGGCT-GAGGAGGACTTCACCAGAGAGCCTCGCAAGATCATCCTGCACAAAGGCTCC 1179
|||.|.|| |||| ||| ..||||||||||.|||||||||||||||||||||||.||.
Sbjct 113 --------------TGCGGCCTGGAGG-GGA---TGCCAGAGAGCCCCGCAAGATCATCCTGCACAAAGGTTCT 168
Query 1180 ACAGGCCTGGGCTTCAACATCGTAGGAGGAGAGGATGGAGAAGGCATTTTTGTCTCCTTCATCCTGGCAGGAGG 1253
||||||||||||||||||||.|||||||||||.||||||||||||||||||||.||||||||||||||.|||||
Sbjct 169 ACAGGCCTGGGCTTCAACATTGTAGGAGGAGAAGATGGAGAAGGCATTTTTGTTTCCTTCATCCTGGCGGGAGG 242
Query 1254 CCCAGCTGACCTGAGTGGGGAGCTGCGCAGGGGAGACCGGATCTTATCGGTGAATGGAGTGAATCTGAGGAATG 1327
||||||.|||||.|||||||||.||||.|||||||||||||||||||||||.||||||||.||.||||||||||
Sbjct 243 CCCAGCAGACCTAAGTGGGGAGTTGCGAAGGGGAGACCGGATCTTATCGGTAAATGGAGTCAACCTGAGGAATG 316
Query 1328 CAACTCATGAGCAGGCTGCAGCTGCTCTGAAACGGGCCGGCCAGTCAGTCACCATTGTGGCCCAGTACAGACCT 1401
|.||.||.|||||.||.||.|||||||||||||||||.|||||||||||||||||||||||||||||.||||||
Sbjct 317 CTACCCACGAGCAAGCAGCGGCTGCTCTGAAACGGGCTGGCCAGTCAGTCACCATTGTGGCCCAGTATAGACCT 390
Query 1402 GAAGAATACAGTCGCTTTGAATCGAAGATACATGACTTACGAGAACAAATGATGAACAGCAGCATGAGCTCTGG 1475
|||||.|||||||||||||||||.|||||.||||||||.||.||||||||||||||||||||||||||.|||||
Sbjct 391 GAAGAGTACAGTCGCTTTGAATCCAAGATCCATGACTTGCGGGAACAAATGATGAACAGCAGCATGAGTTCTGG 464
Query 1476 GTCTGGGTCCCTCCGAACAAGTGAAAAGAGGTCCTTGTATGTCAGGGCCCTGTTTGATTATGATCGGACTCGGG 1549
|||||||||.||||||||.|||||.|||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 465 GTCTGGGTCTCTCCGAACCAGTGAGAAGAGGTCCTTGTATGTCAGGGCCCTGTTTGATTATGATCGGACTCGTG 538
Query 1550 ACAGCTGCCTGCCAAGCCAGGGGCTCAGCTTCTCTTATGGTGACATTCTGCATGTCATTAATGCCTCTGATGAT 1623
|||||||.||.|||||||||||.|||||.|||||||||||||||||||||||.||||||||.||||||||||||
Sbjct 539 ACAGCTGTCTACCAAGCCAGGGACTCAGTTTCTCTTATGGTGACATTCTGCACGTCATTAACGCCTCTGATGAT 612
Query 1624 GAGTGGTGGCAGGCAAGGCTGGTGACCCCACACGGAGAAAGTGAGCAGATCGGTGTGATCCCCAGTAAGAAGAG 1697
|||||||||||.||||||||||||||.||.||.|||||.|||||.|||||||||||||||||.|||||.|||||
Sbjct 613 GAGTGGTGGCAAGCAAGGCTGGTGACTCCTCATGGAGAGAGTGAACAGATCGGTGTGATCCCTAGTAAAAAGAG 686
Query 1698 GGTGGAAAAGAAAGAAAGAGCTCGATTGAAAACTGTGAAGTTCCATGCCAGGACGGGGATGATTGAGTCTAACA 1771
|||||||||||||||..|||||||||||||||||||||||||||||||||||||.|||||||||||||||||..
Sbjct 687 GGTGGAAAAGAAAGAGCGAGCTCGATTGAAAACTGTGAAGTTCCATGCCAGGACAGGGATGATTGAGTCTAATC 760
Query 1772 GG--GACTTC---CCG-----------GGGTT--------------AAGTGACGATTATTA-TGGAGCAAAG-- 1812
|| || || .|| |.||| ||||..|.||| ||| ..||||||||
Sbjct 761 GGTCGA--TCAAAACGAAACGTAAAAAGAGTTTTCGCCTCTCTCGAAAGTTTCCATT-TTACAAGAGCAAAGAA 831
Query 1813 AACCTG------------------------------------------------------------------AA 1820
|||.|| ||
Sbjct 832 AACATGGCCCAGGAGAACAGCATACAGGAACAGGGAGTGACATCCAACACCAGTGACAGCGAAAGCAGTTCCAA 905
Query 1821 AGGACAAGAGGATGCTATTTTGTCATATGAGCCAGTGACACGGCAAGAAATTCACTATGCAAGGCCTGTGATCA 1894
||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.|||||||||||||
Sbjct 906 AGGACAAGAGGATGCTATTTTGTCATATGAGCCAGTGACACGACAAGAAATTCACTATGCCAGGCCTGTGATCA 979
Query 1895 TCCTGGGCCCAATGAAGGACCGAGTCAATGATGACCTGATCTCCGAATTTCCACATAAATTTGGATCCTGTGTG 1968
||.|||||||||||||||||||||||||.||||||||.|||||.||.||.||.|||||||||||||||||||||
Sbjct 980 TCTTGGGCCCAATGAAGGACCGAGTCAACGATGACCTCATCTCTGAGTTCCCGCATAAATTTGGATCCTGTGTG 1053
Query 1969 CCACATACTACCCGGCCTCGACGTGATAATGAGGTGGATGGACAAGACTACCACTTTGTGGTGTCCCGAGAACA 2042
||||||||.|||||||||||.||||||||.|||||.||||||||.||.||||||||||||||.|||||.|||||
Sbjct 1054 CCACATACCACCCGGCCTCGGCGTGATAACGAGGTAGATGGACAGGATTACCACTTTGTGGTTTCCCGGGAACA 1127
Query 2043 AATGGAGAAAGATATTCAGGACAACAAGTTCATCGAGGCGGGCCAATTTAATGATAACCTCTATGGGACCAGCA 2116
|||||||||.|||||||||||||||||||||||.|||||||||||.||.||||||||.||||||||||||||||
Sbjct 1128 AATGGAGAAGGATATTCAGGACAACAAGTTCATTGAGGCGGGCCAGTTCAATGATAATCTCTATGGGACCAGCA 1201
Query 2117 TCCAGTCAGTGCGGGCAGTTGCAGAGAGGGGCAAGCACTGCATCTTAGATGTTTCCGGCAATGCTATCAAGAGA 2190
|||||||.||||||||||||||||||||||||||||||||||||||||||||.||||||||.||.||.||||||
Sbjct 1202 TCCAGTCTGTGCGGGCAGTTGCAGAGAGGGGCAAGCACTGCATCTTAGATGTCTCCGGCAACGCCATAAAGAGA 1275
Query 2191 CTGCAGCAAGCACAACTTTACCCCATTGCCATTTTCATCAAGCCCAAGTCCATTGAAGCCCTTATGGAAATGAA 2264
||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct 1276 CTGCAGCAAGCACAACTTTATCCCATTGCCATTTTCATCAAGCCCAAGTCCATTGAAGCACTTATGGAAATGAA 1349
Query 2265 CCGAAGGCAGACATATGAACAAGCAAATAAGATCTATGACAAAGCCATGAAACTGGAGCAGGAATTTGGAGAGT 2338
||||.||||||||||.|||||||||||||||||||.|||.||||||||||||||||||||.|||||||||||.|
Sbjct 1350 CCGACGGCAGACATACGAACAAGCAAATAAGATCTTTGATAAAGCCATGAAACTGGAGCAAGAATTTGGAGAAT 1423
Query 2339 ACTTTACAGCCATTGTACAGGGTGACTCACTGGAAGAGATTTATAACAAAATCAAACAAATCATTGAGGACCAG 2412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 ACTTTACAGCCATTGTACAGGGTGACTCACTGGAAGAGATTTATAACAAAATCAAACAAATCATTGAGGACCAG 1497
Query 2413 TCTGGGCACTACATTTGGGTCCCATCCCCTGAAAAACTC 2451
|||||||||||||||||||||||||||||||||||||||
Sbjct 1498 TCTGGGCACTACATTTGGGTCCCATCCCCTGAAAAACTC 1536
