Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_00901
- Subject:
- NM_001312905.2
- Aligned Length:
- 2547
- Identities:
- 635
- Gaps:
- 1854
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGTTCGGGAGAACGTGCAAATGTGATGTCATGCCCATTGTTTTGGTGCGCCCAACCAATCGGACTCGCCGCCT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGATTCTACCGGAGCCGGCATGGGCCCTTCCTCGCACCAGCAGCAGGAGTCCCCGCTCCCGACCATAACGCATT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCGCAGGGTGCACCACCGCCTGGTCTCCCTGCAGCTTTAACAGCTCTGACATGGAAACCCCATTGCAGTTCCAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGCGGCTTCTTCCCAGAGCAGCCGCCGCCACCGCCGCGCTCCTCACACCTGCATTGCCAGCAGCAGCAACAGAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCAGGACAAGCCGTGCGCGCCCTTCGCGCCCCTCCCGCACCCTCACCACCACCCGCACCTCGCGCACCAGCAGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CGGGCAGCGGTGGCAGCAGCCCATGCCTCCGGTGCAACAGCTGCGCCTCCTCCGGTGCCCCGGCAGCGGGGGCG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGGGCGGGGGATAACCTGTCCCTGCTGCTCCGCACCTCATCGCCCGGCGGCGCCTTCCGGACCCGCACCTCCTC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCCACTGTCGGGCTCTTCGTGCTGTTGCTGCTGCTCGTCGCGCCGGGGCAGCCAGCTCAATGTGAGCGAGCTGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CGCCGTCCAGCCATGCCAGTGCGCTCCGGCAGCAGTACGCGCAGCAGCCCGCGTCCGCCTCCCAGTACCACCAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 TGCCACAGCCTGCAGCCCGCCACCAGCCCCACAGGCAGCCTGGGCAGCCTGGGCTCCGGGCCCCCGCTCTCGCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CCACCACCACCACCCGCACCCGGCGCACCACCAGCATCACCAACCCCAGGCGCGCCGCGAGAGCAACCCCTTCA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CCGAAATAGCCATGAGCAGCTGCAGGTACAACGGGGGCGTCATGCGTCCGCTCAGCAACTTGAGCTCGTCCCGC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CGGAACCTGCAGGAGATGGACTCCGAGGCTCAGCCCCTGCAGCCCCCCGCGTCCGTCGTAGGAGGAGGTGGTGG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TGCGTCCTCCCCGTCTGCTGCCGCCGCCGCCTCATCCTCAGCCCCGGAGATCGTGGTGTCTAAGCCGGAGCACA 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 ACAATTCTAACAACCTGGCGCTCTACGGGACTGGCGGCGGAGGCAGCACCGGAGGCGGCGGCGGCGGCAGCGGG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CATGGCAGCAGCAGCGGCACCAAGTCCAGCAAAAAGAAGAACCAGAACATCGGCTACAAGCTGGGCCATCGGCG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CGCCCTGTTTGAGAAGCGCAAGCGGCTCAGCGACTATGCGCTTATCTTCGGCATGTTCGGCATCGTGGTTATGG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TCATTGAGACCGAGCTGTCTTGGGGCGCCTACGACAAGGCGTCGCTGTATTCTTTAGCTCTGAAATGCCTTATC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 AGTCTCTCCACGATCATCCTGCTTGGTCTGATCATCGTGTACCACGCCAGGGAAATACAGTTATTCATGGTGGA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CAATGGAGCAGATGACTGGAGAATAGCCATGACTTATGAGCGTATTTTCTTCATCTGCTTGGAAATACTGGTGT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GTGCTATCCATCCCATACCTGGGAATTATACGTTCACATGGACAGCCCGGCTTGCCTTCTCCTATGCCCCCTCC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ACAACCACCGCAGATGTGGATATTATTTTATCTATACCAATGTTCTTAAGGCTCTATCTGATTGCCAGAGTCAT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GCTATTACATAGCAAACTTTTCACCGATGCCTCGTCTAGAAGCATTGGGGCACTTAATAAGATAAACTTCAATA 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CGCGTTTTGTTATGAAGACTTTAATGACTATCTGCCCAGGAACTGTGCTCTTGGTTTTTAGTATCTCATTATGG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 ATAATTGCCGCATGGACTGTCCGAGCTTGTGAAAGGTACCATGATCAACAGGATGTCACTAGCAACTTCCTTGG 1850
Query 1 ----ATGTGGTTGATATCAATAACTTTTCTCTCCATTGGTTATGGTGACATGGTACCTAACACATACTGTGGAA 70
|||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||.|
Sbjct 1851 AGCAATGTGGTTGATATCAATAACTTTTCTCTCCATTGGTTATGGTGACATGGTACCCAACACATACTGTGGGA 1924
Query 71 AAGGAGTCTGCTTACTTACTGGAATTATGGGTGCTGGTTGCACAGCCCTGGTGGTAGCTGTAGTGGCAAGGAAG 144
|||||||||||||.|||||||||||.||||||||.|||||||||||||||||||||||.|||||||||||.|||
Sbjct 1925 AAGGAGTCTGCTTGCTTACTGGAATCATGGGTGCAGGTTGCACAGCCCTGGTGGTAGCCGTAGTGGCAAGAAAG 1998
Query 145 CTAGAACTTACCAAAGCAGAAAAACACGTGCACAATTTCATGATGGATACTCAGCTGACTAAAAGAGTAAAAAA 218
|||||||||||||||||||||||.||.||||||||||||||||||||||||||||||||.||||||||.|||||
Sbjct 1999 CTAGAACTTACCAAAGCAGAAAAGCATGTGCACAATTTCATGATGGATACTCAGCTGACCAAAAGAGTGAAAAA 2072
Query 219 TGCAGCTGCCAATGTACTCAGGGAAACATGGCTAATTTACAAAAATACAAAGCTAGTGAAAAAGATAGATCATG 292
.|||||.||||||||||||||||||||.|||.||||.||||||||.||||||||||||||||||||.||.||.|
Sbjct 2073 CGCAGCCGCCAATGTACTCAGGGAAACGTGGTTAATCTACAAAAACACAAAGCTAGTGAAAAAGATCGACCACG 2146
Query 293 CAAAAGTAAGAAAACATCAACGAAAATTCCTGCAAGCTATTCATCAATTAAGAAGTGTAAAAATGGAGCAGAGG 366
|||||||||||||.||||||||.||||||.||||||||||||||||||||||||||||.||.|||||.||||||
Sbjct 2147 CAAAAGTAAGAAAGCATCAACGGAAATTCTTGCAAGCTATTCATCAATTAAGAAGTGTGAAGATGGAACAGAGG 2220
Query 367 AAACTGAATGACCAAGCAAACACTTTGGTGGACTTGGCAAAGACCCAGAACATCATGTATGATATGATTTCTGA 440
||||||||||||||||||||.||..|.|||||..||||||||||||||||.|||||||||||.||||||||.||
Sbjct 2221 AAACTGAATGACCAAGCAAATACCCTAGTGGATCTGGCAAAGACCCAGAATATCATGTATGACATGATTTCCGA 2294
Query 441 CTTAAACGAAAGGAGTGAAGACTTCGAGAAGAGGATTGTTACCCTGGAAACAAAACTAGAGACTTTGATTGGTA 514
|||.||.|||||||||||||||||.|||||.|||||.||.||||||||||||||||||||||||||||||||||
Sbjct 2295 CTTGAATGAAAGGAGTGAAGACTTTGAGAAAAGGATCGTCACCCTGGAAACAAAACTAGAGACTTTGATTGGTA 2368
Query 515 GCATCCACGCCCTCCCTGGGCTCATAAGCCAGACCATCAGGCAGCAGCAGAGAGATTTCATTGAGGCTCAGATG 588
||||.||.||||||||||||||.||.||||||||||||||.||||||||.||.||.|||||||||.|.||||||
Sbjct 2369 GCATTCATGCCCTCCCTGGGCTAATCAGCCAGACCATCAGACAGCAGCAAAGGGACTTCATTGAGACACAGATG 2442
Query 589 GAGAGCTACGACAAGCACGTCACTTACAATGCTGAGCGGTCCCGGTCCTCGTCCAGGAGGCGGCGGTCCTCTTC 662
||||.||||||||||||.|||.|.||||||||||||||.||||||||||||||||||||||||||||||||.||
Sbjct 2443 GAGAACTACGACAAGCATGTCTCCTACAATGCTGAGCGCTCCCGGTCCTCGTCCAGGAGGCGGCGGTCCTCCTC 2516
Query 663 CACAGCACCACCAACTTCATCAGAGAGTAGC 693
||||||.||||||||||||||||||||||||
Sbjct 2517 CACAGCGCCACCAACTTCATCAGAGAGTAGC 2547
