Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_00999
Subject:
NM_001346044.1
Aligned Length:
1389
Identities:
1080
Gaps:
246

Alignment

Query    1  ------------------------------------ATGGACGGAGTAGGGGTTCCCGCTTCCATGTACGGAGA  38
                                                ||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGTTTCTGTACGATGAGCTGCCCCATTACGGCGGGATGGACGGAGTAGGGGTTCCCGCTTCCATGTACGGAGA  74

Query   39  CCCTCACGCGCCGCGGCCGATCCCCCCGGTTCACCACCTGAACCACGGGCCGCCGCTCCACGCCACACAGCACT  112
            |||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||.|||||||
Sbjct   75  CCCTCACGCGCCGCGGCCGATCCCCCCGGTTCACCACCTAAACCACGGGCCGCCGCTCCACGCCACGCAGCACT  148

Query  113  ACGGCGCGCACGCCCCGCACCCCAATGTCATGCCGGCCAGTATGGGATCCGCTGTCAACGACGCCTTGAAGCGG  186
            ||||||||||||||||||||||||||||||||||.|||||.||||||||.||||||||||||||||||||..|.
Sbjct  149  ACGGCGCGCACGCCCCGCACCCCAATGTCATGCCAGCCAGCATGGGATCTGCTGTCAACGACGCCTTGAAAAGA  222

Query  187  GACAAGGACGCGATCTATGGGCACCCGTTGTTTCCTCTGTTAGCTCTGGTCTTTGAGAAGTGCGAGCTGGCGAC  260
            |||||||||||.||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct  223  GACAAGGACGCAATCTATGGGCACCCGTTGTTTCCTCTGTTAGCTCTGGTTTTTGAGAAGTGCGAGCTGGCGAC  296

Query  261  CTGCACTCCCCGGGAACCTGGAGTGGCTGGCGGAGACGTCTGCTCCTCCGACTCCTTCAACGAGGACATCGCGG  334
            ||||||||||||||||||.||||||||.||||||||||||||.|||||.|||||||||||||||||||||||||
Sbjct  297  CTGCACTCCCCGGGAACCCGGAGTGGCCGGCGGAGACGTCTGTTCCTCTGACTCCTTCAACGAGGACATCGCGG  370

Query  335  TCTTCGCCAAGCAGGTTCGCGCCGAAAAGCCACTTTTTTCCTCAAATCCAGAGCTGGACAATTTGATGATACAA  408
            |||||||||||||||||||||||||||||||.||||||||||||||.|||||||||||.|||||||||||||||
Sbjct  371  TCTTCGCCAAGCAGGTTCGCGCCGAAAAGCCTCTTTTTTCCTCAAACCCAGAGCTGGATAATTTGATGATACAA  444

Query  409  GCAATACAAGTACTAAGGTTTCATCTTTTGGAGTTAGAAAAGGTCCACGAACTGTGCGATAACTTCTGCCACCG  482
            |||||.|||||||||||||||||||||.|||||||||||||||||||||||||.||.|||||||||||||||||
Sbjct  445  GCAATTCAAGTACTAAGGTTTCATCTTCTGGAGTTAGAAAAGGTCCACGAACTATGTGATAACTTCTGCCACCG  518

Query  483  ATACATTAGCTGTTTGAAGGGGAAAATGCCCATCGACCTCGTCATTGATGAAAGAGACGGCAGCTCCAAGTCAG  556
            .||||||||||||||||||||.|||||||||||.||||||||.||||||||.|||||.||.|||||||||||||
Sbjct  519  GTACATTAGCTGTTTGAAGGGAAAAATGCCCATTGACCTCGTGATTGATGAGAGAGATGGAAGCTCCAAGTCAG  592

Query  557  ATCATGAAGAACTTTCAGGCTCCTCCACAAATCTCGCTGACCATAACCCTTCTTCTTGGCGAGACCACGATGAT  630
            |||||||||||||||||||||||||||||||||||||.|||||.||||||||.||.|||||||||||||||||.
Sbjct  593  ATCATGAAGAACTTTCAGGCTCCTCCACAAATCTCGCCGACCACAACCCTTCATCCTGGCGAGACCACGATGAC  666

Query  631  GCAACCTCAACCCACTCAGCAGGCACCCCAGGGCCCTCCAGTGGGGGCCATGCTTCCCAGAGCGGAGACAACAG  704
            |||||||||||.|||||.||||||||||||||.|||||||||||||||||||||||||||||.|||||||||||
Sbjct  667  GCAACCTCAACGCACTCCGCAGGCACCCCAGGACCCTCCAGTGGGGGCCATGCTTCCCAGAGTGGAGACAACAG  740

Query  705  CAGTGAGCA-----------------------------------------------------------------  713
            |||||||||                                                                 
Sbjct  741  CAGTGAGCAAGGCGCTTCGGAGACTGAGGCTGACCATTTACTATTGTGGAAGCCCATGACTGATCGCACAGGAT  814

Query  714  --------------------------------------------------------------------------  713
                                                                                      
Sbjct  815  GCGTTTCAGTGCAAATGTCAAGAGAAGATAGAGAAGAAAGCAGAGAGGGAAAACACTCTCCACAACCACTTGAA  888

Query  714  --------------------------------------------------AGGGGATGGTTTAGACAACAGTGT  737
                                                              |||.|||||.|||||||||||.||
Sbjct  889  AACATCATCATTCCCTGTCAGCCGCCCTTTCGTGGGGAAAGCGAAGCTGGAGGCGATGGGTTAGACAACAGCGT  962

Query  738  AGCTTCACCTGGTACAGGTGACGATGATGATCCGGATAAGGACAAAAAACGCCAGAAGAAAAGAGGCATTTTCC  811
            ||||||||||||.||||||||.||.||.|||||.||.||||||||||||||||||||||||||||||||.||||
Sbjct  963  AGCTTCACCTGGCACAGGTGATGACGACGATCCAGACAAGGACAAAAAACGCCAGAAGAAAAGAGGCATATTCC  1036

Query  812  CCAAAGTAGCAACAAATATCATGAGAGCATGGCTCTTCCAGCATCTCACACATCCGTACCCTTCCGAAGAGCAG  885
            |||||||.||.|||||||||||||||||.|||||||||||||||||||||||.|||||||||||.|||||.|||
Sbjct 1037  CCAAAGTCGCGACAAATATCATGAGAGCGTGGCTCTTCCAGCATCTCACACACCCGTACCCTTCAGAAGAACAG  1110

Query  886  AAGAAACAGTTAGCGCAAGACACAGGACTTACAATTCTCCAAGTAAACAACTGGTTTATTAATGCCAGAAGAAG  959
            |||||||||||||||||||||||.|||||.||||||||.|||||.||||||||||||||.||||||||||||||
Sbjct 1111  AAGAAACAGTTAGCGCAAGACACGGGACTGACAATTCTGCAAGTGAACAACTGGTTTATCAATGCCAGAAGAAG  1184

Query  960  AATAGTACAGCCCATGATTGACCAGTCAAATCGAG---------------------CAGTGAGCCAAGGAGCAG  1012
            ||||||.||||||||||||||||||||||||||||                     ||||||||||||||||||
Sbjct 1185  AATAGTGCAGCCCATGATTGACCAGTCAAATCGAGCAGGTTTTCTTCTTGATCCTTCAGTGAGCCAAGGAGCAG  1258

Query 1013  CATATAGTCCAGAGGGTCAGCCCATGGGGAGCTTTGTGTTGGATGGTCAGCAACACATGGGGATCCGGCCTGCA  1086
            |.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CGTATAGTCCAGAGGGTCAGCCCATGGGGAGCTTTGTGTTGGATGGTCAGCAACACATGGGGATCCGGCCTGCA  1332

Query 1087  GGACCTATGAGTGGAATGGGCATGAATATGGGCATGGATGGGCAATGGCACTACATG  1143
            |||||.||||||||||||||||||||||||||||||||||||||.||||||||.|||
Sbjct 1333  GGACCCATGAGTGGAATGGGCATGAATATGGGCATGGATGGGCAGTGGCACTATATG  1389

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