Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_01283
• Subject: XR_939695.2
• Aligned Length: 3065
• Identities: 1678
• Gaps: 1316

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGTGCTGGCCTGCGCCCCCGAGCCGGATCGGCGGCCGCCCGGACTCCGAGCCCGCGCGGATGTGAGATTCCGGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTCCTGGCGCCTCCCGATCGCCGGCTCCGGCGCGGCGCTGCTTCGCCCAGGAGGCGGCGGCCCCGGCTGGCCGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGGGCTTGTGGATTTTTAAAAATTTGGCTCCGAGGAGGACCATTTCCTCTCGACATGCATCCCTCCGGATAGAC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGAACATCCCTCCGTTCACCCCCCCGCCCCGCGCGGTCAGAGGCAGGCGCTGAGTGTGCGAAGAGGATCCGGGT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGAAATCTGCGCCCCCGGTTCTCGTCCCCGCCCCGTCCCACCGCCCCATCCCCCTCCCGGAGTCGAAATTTCCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GGGATTATGTTTCGGAAAGGTAGGTAAGCGCCGGGCGCGGCGCCCGCTTTCCCGCAGTCCGGAGCCGGAGAGCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AGCGAGGCGGCGAGGCAGCCCCCGCGGCTTGCAGCGGAGCCGACAGCTCGTCTTCTCTTCTGGAGGTGCAGCTG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GTGGTCGGGGGGAGAGACTTGCTCCAAACACGGACATCCCCCAGCTCTCCCCCCTCCCTGTTTTCCGTTAGGAA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCCGGCGAGGAAATACATGCACTGGCTGAGAATCGCCCGCGCCAGGGCGCAACGCCACAAGGTGTAGGGAGTGT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GCGGGGTGGGGCGAAAGGGGACCCAAGAGTCCCTGTGGCTCGGAGTGCCGGGCCGTCGGTTCTTCATTCCTGCC  740

Query    1  ----------------------------------------------ATGGTAGTGTTCAATGGCCTTCTTAAGA  28
                                                          ||||||||||||||||||||||||||||
Sbjct  741  CTCGGGGCAGACGGAGTGACCCCGGCCCCCACTCCCCGCCCCGACCATGGTAGTGTTCAATGGCCTTCTTAAGA  814

Query   29  TCAAAATCTGCGAGGCCGTGAGCTTGAAGCCCACAGCCTGGTCGCTGCGCCATGCGGTGGGACCCCGGCCGCAG  102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TCAAAATCTGCGAGGCCGTGAGCTTGAAGCCCACAGCCTGGTCGCTGCGCCATGCGGTGGGACCCCGGCCGCAG  888

Query  103  ACTTTCCTTCTCGACCCCTACATTGCCCTCAATGTGGACGACTCGCGCATCGGCCAAACGGCCACCAAGCAGAA  176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ACTTTCCTTCTCGACCCCTACATTGCCCTCAATGTGGACGACTCGCGCATCGGCCAAACGGCCACCAAGCAGAA  962

Query  177  GACCAACAGCCCGGCCTGGCACGACGAGTTCGTCACCGATGTGTGCAACGGACGCAAGATCGAGCTGGCTGTCT  250
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GACCAACAGCCCGGCCTGGCACGACGAGTTCGTCACCGATGTGTGCAACGGACGCAAGATCGAGCTGGCTGTCT  1036

Query  251  TTCACGATGCCCCCATAGGCTACGACGACTTCGTGGCCAACTGCACCATCCAGTTTGAGGAGCTGCTGCAGAAC  324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TTCACGATGCCCCCATAGGCTACGACGACTTCGTGGCCAACTGCACCATCCAGTTTGAGGAGCTGCTGCAGAAC  1110

Query  325  GGGAGCCGCCACTTCGAGGACTGGATTGATCTGGAGCCAGAAGGAAGAGTGTATGTGATCATCGATCTCTCAGG  398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GGGAGCCGCCACTTCGAGGACTGGATTGATCTGGAGCCAGAAGGAAGAGTGTATGTGATCATCGATCTCTCAGG  1184

Query  399  GTCGTCGGGTGAAGCCCCTAAAGACAATGAAGAGCGTGTGTTCAGGGAACGCATGCGGCCGAGGAAGCGGCAGG  472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GTCGTCGGGTGAAGCCCCTAAAGACAATGAAGAGCGTGTGTTCAGGGAACGCATGCGGCCGAGGAAGCGGCAGG  1258

Query  473  GGGCCGTCAGGCGCAGGGTCCATCAGGTCAACGGCCACAAGTTCATGGCCACCTATCTTCGGCAGCCCACCTAC  546
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  GGGCCGTCAGGCGCAGGGTCCATCAGGTCAACGGCCACAAGTTCATGGCCACCTATCTTCGGCAGCCCACCTAC  1332

Query  547  TGCTCCCATTGCAGAGACTTCATCTGGGGTGTCATAGGAAAGCAGGGATACCAGTGTCAAGTCTGCACCTGCGT  620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  TGCTCCCATTGCAGAGACTTCATCTGGGGTGTCATAGGAAAGCAGGGATACCAGTGTCAAGTCTGCACCTGCGT  1406

Query  621  GGTCCACAAGCGGTGCCACGAGCTCATAATCACAAAGTGTGCTGGGTTAAAGAAGCAGGAGACCCCCGACCAGG  694
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GGTCCACAAGCGGTGCCACGAGCTCATAATCACAAAGTGTGCTGGGTTAAAGAAGCAGGAGACCCCCGACCAGG  1480

Query  695  TGGGCTCCCAGCGGTTCAGCGTCAACATGCCCCACAAGTTCGGTATCCACAACTACAAGGTCCCTACCTTCTGC  768
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TGGGCTCCCAGCGGTTCAGCGTCAACATGCCCCACAAGTTCGGTATCCACAACTACAAGGTCCCTACCTTCTGC  1554

Query  769  GATCACTGTGGGTCCCTGCTCTGGGGACTCTTGCGGCAGGGTTTGCAGTGTAAAGTCTGCAAAATGAATGTTCA  842
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  GATCACTGTGGGTCCCTGCTCTGGGGACTCTTGCGGCAGGGTTTGCAGTGTAAAGTCTGCAAAATGAATGTTCA  1628

Query  843  CCGTCGATGTGAGACCAACGTGGCTCCCAACTGTGGAGTGGATGCCAGAGGAATCGCCAAAGTACTGGCCGACC  916
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  CCGTCGATGTGAGACCAACGTGGCTCCCAACTGTGGAGTGGATGCCAGAGGAATCGCCAAAGTACTGGCCGACC  1702

Query  917  TGGGCGTTACCCCAGACAAAATCACCAACAGCGGCCAGAGAAGGAAAAAGCTCATTGCTGGTGCCGAGTCCCCG  990
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  TGGGCGTTACCCCAGACAAAATCACCAACAGCGGCCAGAGAAGGAAAAAGCTCATTGCTGGTGCCGAGTCCCCG  1776

Query  991  CAGCCTGCTTCTGGAAGCTCACCATCTGAGGAAGATCGATCCAAGTCAGCACCCACCTCCCCTTGTGACCAGGA  1064
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  CAGCCTGCTTCTGGAAGCTCACCATCTGAGGAAGATCGATCCAAGTCAGCACCCACCTCCCCTTGTGACCAGGA  1850

Query 1065  AATAAAAGAACTTGAGAACAACATTCGGAAAGCCTTGTCATTTGACAACCGAGGAGAGGAGCACCGGGCAGCAT  1138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  AATAAAAGAACTTGAGAACAACATTCGGAAAGCCTTGTCATTTGACAACCGAGGAGAGGAGCACCGGGCAGCAT  1924

Query 1139  CGTCTCCTGATGGCCAGCTGATGAGCCCCGGTGAGAATGGCGAAGTCCGGCAAGGCCAGGCCAAGCGCCTGGGC  1212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  CGTCTCCTGATGGCCAGCTGATGAGCCCCGGTGAGAATGGCGAAGTCCGGCAAGGCCAGGCCAAGCGCCTGGGC  1998

Query 1213  CTGGATGAGTTCAACTTCATCAAGGTGTTGGGCAAAGGCAGCTTTGGCAAGGTCATGTTGGCAGAACTCAAGGG  1286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  CTGGATGAGTTCAACTTCATCAAGGTGTTGGGCAAAGGCAGCTTTGGCAAGGTCATGTTGGCAGAACTCAAGGG  2072

Query 1287  CAAAGATGAAGTATATGCTGTGAAGGTCTTAAAGAAGGACGTCATCCTTCAGGATGATGACGTGGACTGCACAA  1360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  CAAAGATGAAGTATATGCTGTGAAGGTCTTAAAGAAGGACGTCATCCTTCAGGATGATGACGTGGACTGCACAA  2146

Query 1361  TGACAGAGAAGAGGATTTTGGCTCTGGCACGGAAACACCCGTACCTTACCCAACTCTACTGCTGCTTCCAGACC  1434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  TGACAGAGAAGAGGATTTTGGCTCTGGCACGGAAACACCCGTACCTTACCCAACTCTACTGCTGCTTCCAGACC  2220

Query 1435  AAGGACCGCCTCTTTTTCGTCATGGAATATGTAAATGGTGGAGACCTCATGTTTCAGATTCAGCGCTCCCGAAA  1508
            |||                  |.|.||||.|.|    ||.||                                
Sbjct 2221  AAG------------------AGGCAATAGGAA----GTTGA--------------------------------  2240

Query 1509  ATTCGACGAGCCTCGTTCACGGTTCTATGCTGCAGAGGTCACATCGGCCCTCATGTTCCTCCACCAGCATGGAG  1582
                    ||||||                         |||.|..|.||||||               |||||
Sbjct 2241  --------AGCCTC-------------------------CACTTTTGACCTCAT---------------TGGAG  2266

Query 1583  TCATCTACAGGGATTTGAAACTGGACAACAT--CCTTCTGGATGCAGAAGGTCACTGCAAGCTGGCTGACTTCG  1654
             |||         ||||    |....|.|||  |.|||  .|.|.||||.|.||  |.|||      ||  || 
Sbjct 2267  -CAT---------TTTG----TTTTTACCATGACGTTC--CAGGGAGAATGCCA--GGAAG------GA--TC-  2313

Query 1655  GGATGTGCAAGGAAGGGATTCTGAATGGTGTGACGACCACCACGTTCTGTGGGACTCCTGACTACATAGCTCCT  1728
              |||.||||  ||.|.|||||                      .||.||..|.|||||       |||    |
Sbjct 2314  --ATGGGCAA--AAAGAATTCT----------------------CTCAGTCCGCCTCCT-------TAG----T  2350

Query 1729  GAGATCCTGCAGGAGTTGGAGTATGGCCCCTCCGTGGACTGGTGGGCCCTGGGGGTGCTGATGTACGAGA----  1798
            |.|     ||||||||..||          ||.||                      ||.|.|.||.|||    
Sbjct 2351  GTG-----GCAGGAGTATGA----------TCTGT----------------------CTCAAGGACAAGAAGTG  2387

Query 1799  TGATGGCTGGACAGCCTCCCTTTGAGGCC-----------GACAATGAGGACGACCTATTTGAGTCC--ATCC-  1858
            ||.||.||||      ||||.|   ||||           .|.|||||.| ||        .|||||  |||| 
Sbjct 2388  TGGTGACTGG------TCCCAT---GGCCTATTTAGCTGGAAGAATGAAG-CG--------TAGTCCCTATCCT  2443

Query 1859  ---TCCATGACGACGTGCTGTACCCAG-TCTGGCTCA--GCAAGGAGGCTGTCAGCATCTTGAA----------  1916
               ||||.|||.|.|      .||.|| |..||||||  .|.|||.||.|.||..||    |||          
Sbjct 2444  CTTTCCAAGACCAAG------GCCAAGATGGGGCTCAAGACCAGGGGGTTATCTACA----GAACTGCTGGCCC  2507

Query 1917  AGCTTTCATGACGAAGAATCCCCACAAGCGCCTGGGCTGTGTGGCATCGCAGAATGGCGAGGACGCCATCAAGC  1990
            |.|||.||            ||.||     ||||||                        ||||          
Sbjct 2508  ACCTTCCA------------CCTAC-----CCTGGG------------------------GGAC----------  2530

Query 1991  AGCACCCATTCTTCAA-------------------------------AGAGATTGACTGGGTGCTC-CTGGAGC  2032
              |.|||  ||||.||                               .|||||.||.|.|| |||| .|||..|
Sbjct 2531  --CTCCC--TCTTGAAGGTTGGGATTCTTTTTTTTCTTTTTTTTTTTTGAGATGGAGTCGG-GCTCTGTGGCCC  2599

Query 2033  AGAAGAAGATCAAGCCACCCTTCAAACCACGCATTAAAACCAAAAGAGACGTCAATAATTTTGACCAAGACTTT  2106
            |||.                                                                      
Sbjct 2600  AGAC----------------------------------------------------------------------  2603

Query 2107  ACCCGGGAAGAGCCGGTACTCACCCTTGTGGACGAAGCAATTGTAAAGCAGATCAACCAGGAGGAATTCAAAGG  2180
                                                                                      
Sbjct 2604  --------------------------------------------------------------------------  2603

Query 2181  TTTCTCCTACTTTGGTGAAGACCTGATGCCC  2211
                                           
Sbjct 2604  -------------------------------  2603