Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_01317
- Subject:
- NR_002186.1
- Aligned Length:
- 2834
- Identities:
- 1022
- Gaps:
- 1690
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTCATATTAAAAAAATAGCTGGTAAATCTTTCTAGGTAGTAACTTATCCAAACAATACTTTGAGTATCATATTT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGTGAATGACTTGCTTAAACTGGGAAACTGAATATTCTTTTTAAATCATATAATTCCTGTATTAAATGTGAAAC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ACACAGTCTCCAAAGTCACCTGATTCTCTGTGGAAAATGAAAGGCATTGAAGGAAACCAGATACATTAATACTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AGTTTTGGTTGAAAGTGCAACATTACTGTACTTAGAAGGGGCTTGGTTTATTTTTAGATATTTAAGCTATCATT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AATTTTAGACCAATGGCTAATAATAAGAGAGATTTTTGGTTGCTCATTTATGGAGAGACAAAGAACAGCATGGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATAAACAAACATCCCAGAAATAAATGAAAAGTTTTAAGTGATAAAATTGTGTTTTCTATGAACCAGTGTTGTAC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ATGAACCAACATTGTGTTTCTTAGCTCTGACCTGTACAGTGAGGTACCTGTCAGGACCCCTAGTCTTGGCACTG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAAATGACAAAGTTCTCCTATTACTAAATTCTCATGCCTTCCTTTTCTGACTTAGTAGATTGAAATTGGTAGGT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ACTAATGATTTATGTTTGATAAACTTAAGTTCTGCTGATATCCTGTTACTGGTAATTCTGGTACCAAAATTTCA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AACGGTTTGATTATTAGTAGCATTTTGAGTACCTAGGTGCATATAATACAGTTAGCAGACCCTTACAGAGTCAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 AAGAGATTTTGGAATCTGGTGATACTGTTGTTTATTACACTAGCCTATTACATTTTCTTTCTTTATAATAACTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTTATGTGAGTTTCATTGAAAATCGTGGCTCTATTGCTTTATTCATGGTTTCCACAACTCTTTTTGTAACACCT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TAATTTTCTCTCTTAGGTATTTTCCTGTTAAATAAGATATCAAAAGCATCAATCACAAGACAGAGAAAACGTAT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TAGGAAAAACTTGTATTAGTATATTCTAAACTGAAATGGAAAAACTCATTATTCATATTTTAATAAATAAAACT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CCCAAATGATCTTGCTAAATTATCCCACTATTTAGAAGTAGAAAATAAGAGAAGAGTGCTTTCAAGGAAATTTG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TCATATTCTCCCTTCTATCTAGAAGTTGACAATGAATTGCAATAAAACTAAGAAATAACTGAATGCTGAAAAAT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ACCATGAATTAATGTTATGGCTTCTTTATTTTTGTATATCCATTCCCACAAAATTGAATTTAAGATTATTAATG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AAAATTCTATATTAAGTAATAATGCTTGTATTAGTAATGGGCAAAGAAGTCTTTCTTTGTTACATTAACCGTTA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GTAAAAGATGTACTTTGACATTTCTGATGTAAAACCTATATGTAAATATTGTAATTTAAATATGATTGGACAGC 1406
Query 1 ------------------------------------------------------ATGGCGCTTGACGGACCAGA 20
||||||||||||||||||.|
Sbjct 1407 TGTTAAGTTTTGGGGAGGGAAGCAGATGCCAGCGTTCTCTGCTGAAAAGACAAGATGGCGCTTGACGGACCACA 1480
Query 21 GCAGATGGAGCTGGAGGAGGGGAAGGCAGGCAGCGGACTCCGCCAATATTATCTGTCCAAGATTGAAGAACTC- 93
||||||||||||||||||||..|||||||||||.||||||.||||.|||||||||||||||||||||||||||
Sbjct 1481 GCAGATGGAGCTGGAGGAGGAAAAGGCAGGCAGTGGACTCTGCCAGTATTATCTGTCCAAGATTGAAGAACTCC 1554
Query 94 ----------------------------------------------------------------------CAGC 97
||||
Sbjct 1555 AGGGTCAACTGCAATATAAATTGGATGGGGGAAAGCCACAAGGAACAGTTCTGAACTCCAGGTGCATTTGCAGC 1628
Query 98 TGATTGTGAATGATAAGAGCCAAAACCTCCGGAGGCTGCAGGCACAGAGGAACGAACTAAATGCTAAAGTTCGC 171
|||||.||||||||||||.||||||||||.||||||.|||||..||..||||.||||||||||.||||||..||
Sbjct 1629 TGATTTTGAATGATAAGACCCAAAACCTCTGGAGGCGGCAGGTGCACGGGAATGAACTAAATGTTAAAGTGTGC 1702
Query 172 CTATTGCGGGAGGAGCTACAGCTGCTGCAGGAGCAGGGCTCCTATGTGGGGGAAGTAGTCCGGGCCATGGATAA 245
|||||.|.||||||||||||||||||||||||..|||.|||||.|||..||||||||||||.||||||||.|||
Sbjct 1703 CTATTACAGGAGGAGCTACAGCTGCTGCAGGAATAGGACTCCTGTGTCAGGGAAGTAGTCCAGGCCATGGGTAA 1776
Query 246 GAAGAAAGTGTTGGTCAAGGTACATCCTGAAGG-TAAATTTGTTGTAGACGTGGACAAAAACATTGACATCAAT 318
|||||||||||||||||||||.||| ||.|||| .||.|||||..||||.|||||||||||.||...|||||.|
Sbjct 1777 GAAGAAAGTGTTGGTCAAGGTGCAT-CTCAAGGACAAGTTTGTCATAGATGTGGACAAAAATATCAGCATCAGT 1849
Query 319 GATGTGACACCCAATTGCCGGGTGGCTCTAAGGAATGACAGCTACACTCTGCACAAGATCCTGCCCAACAAGGT 392
|||||||||||||.||.|..|||||.||||||.|||||||||||||||.|||||||||||||.|||||||||||
Sbjct 1850 GATGTGACACCCAGTTCCTTGGTGGTTCTAAGAAATGACAGCTACACTTTGCACAAGATCCTACCCAACAAGGT 1923
Query 393 AGACCCATTAGTGTCACTGATGATGGTGGAGAAAGTACCAGATTCAACTTATGAGATGATTGGTGGACTGGACA 466
.|||.||||.||||||||||||||||||.|||||||||||||||||.|||||||.|||||||||.|||||||.|
Sbjct 1924 GGACTCATTGGTGTCACTGATGATGGTGAAGAAAGTACCAGATTCAGCTTATGAAATGATTGGTAGACTGGATA 1997
Query 467 AACAGATCAAGGAGATCAAAGAAGTGATCGAGCTGCCTGTTAAGCATCCTGAGCTCTTCGAAGCACTGGGCATT 540
..|||||||||.|||||||||||||||||||.|||||||.|||||||||.|||||||||.||||||||||||||
Sbjct 1998 GGCAGATCAAGAAGATCAAAGAAGTGATCGACCTGCCTGCTAAGCATCCCGAGCTCTTCAAAGCACTGGGCATT 2071
Query 541 GCTCAGCCCAAGGGAGTGCTGCTGTATGGACCTCCAGGCACTGGGAAGACACTGTTGGCCCGGGCTGTGGCTCA 614
||.||||||||||||.||||| ||.||||||.||||||||||.|||||.|||||||
Sbjct 2072 GCACAGCCCAAGGGAATGCTG-------------------CTTGGAAGAGACTGTTGGCCTGGGCTCTGGCTCA 2126
Query 615 TCATACGGAC--TGTACCTTTATTCGTGTCTCTGGCTCTGAACTGGTACAGAAATTCATAGGGGAAGGGGCAAG 686
|||||.|||| |||||||||||||.||||||||||||||||.||||||||||||||||.||||||
Sbjct 2127 TCATAGGGACTGTGTACCTTTATTCATGTCTCTGGCTCTGAATTGGTACAGAAATTCATTGGGGAA-------- 2192
Query 687 AATGGTGAGGGAGCTGTTTGTCATGGCACGGGAACATGCTCCATCTATCATCTTCATGGACGAAATCGACTCCA 760
|.|.|||.|||||| |.|||.||||| |||||.|||||||||||||.|||||.|||||..
Sbjct 2193 --------------TTTCTGTGATGGCA-GAGAAAATGCT-CATCTGTCATCTTCATGGATGAAATTGACTCTT 2250
Query 761 TCGGCTCCTCGCGGCTGGAGGGGGGTTCTGGAGGGGACAGTGAAGTGCAGCGCACGATGCTGGAGTTGCTCAAC 834
|.||||||||...|||||||||||.|.||||||||.|||||||||||||||..|.||||||
Sbjct 2251 TTGGCTCCTCAGAGCTGGAGGGGGATGCTGGAGGGAACAGTGAAGTGCAGCAGATGATGCT------------- 2311
Query 835 CAGCTCGA---CGGCTTTGAGGCCACCAAGAACATCAAGG-TTATCATGGCTACTAATAGGATTGATATCCTGG 904
|||| .|||||||||||||||||||..||||.|| ||||||.||||.||||||.||||||||||||||
Sbjct 2312 ----TCGAGGGTGGCTTTGAGGCCACCAAGAGTATCACGGTTTATCACGGCTGCTAATACGATTGATATCCTGG 2381
Query 905 ACTCGGCACTGCTTCGCCCAGGGCGCATTGACAGAAAAATTGAATTCCCACCCCCCAATGAGGAGGCCCGGCTG 978
||||||||||||||.|||||||||.|||||||||||||||||||||||||.||..|||||||.|||||.|||||
Sbjct 2382 ACTCGGCACTGCTTTGCCCAGGGCACATTGACAGAAAAATTGAATTCCCAACCTGCAATGAGTAGGCCTGGCTG 2455
Query 979 GACATTTTGAAGATTCATTCTCGGAAGATGAACCTGACCCGGGGGATCAACCTGAGAAAAATTGCTGAGCTCAT 1052
|.||.|||||||||||||||||.||| |||||||||||||.||||||||||||||||||||||||||||||.||
Sbjct 2456 GTCACTTTGAAGATTCATTCTCAGAA-ATGAACCTGACCCAGGGGATCAACCTGAGAAAAATTGCTGAGCTTAT 2528
Query 1053 GCCAGGAGCATCAGGGGCTGAAGTGAAGGGCGTGTGCACAGAAGCTGGCATGTATGCCCTGCGAGAACGGCGAG 1126
||||||||||||| ||||||||||||||||.|||||||||||.|.|||||||||||||| |||.| |||||
Sbjct 2529 GCCAGGAGCATCA--GGCTGAAGTGAAGGGCATGTGCACAGAAACCGGCATGTATGCCCT--GAGTA--GCGAG 2596
Query 1127 TCCATGTCACTCAGGAGGACTTTGAGATGGCAGTAG-CCAAGG-------TCATGCAGAAGGACAGTGA-GAAA 1191
||||||||||||||.||||||||||| |||| ||||.| ||||||..||||||||||| ||||
Sbjct 2597 TCCATGTCACTCAGAAGGACTTTGAG------GTAGTCCAAAGTCCTATCTCATGCCAAAGGACAGTGAGGAAA 2664
Query 1192 AACATGTCCATCAAGAAATTATGGAAG----------------------------------------------- 1218
||||||||||||||||||.|||||||.
Sbjct 2665 AACATGTCCATCAAGAAACTATGGAATTGAGGGCACATCCTTTGTGTGTATCCCTACAATAAAACTCAGTGGGA 2738
Query 1219 ---------------------- 1218
Sbjct 2739 CAAGCAAAAAAAAAAAAAAAAA 2760
