Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_01346
- Subject:
- XR_001748831.2
- Aligned Length:
- 2978
- Identities:
- 1235
- Gaps:
- 1742
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAACAAAAATGATACAAATAAAGATAAACCTGTGTATTCTACCTTTTATTGACAAATAATTCTGAACTTTTTAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TGTTCCGTATTACTTTAGAAAAATATGTGATATTCTAACAATATGTATTCTTGAGATGATATTTTAGTCAGGTT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTGACAGCAGAGACTCTATTTGAAAAAAAAAAAAGATGTGATTAAAAGAAAGAAGGAAATAATGCTGGCATTGT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TGCTGTATTTATTAATGCACCACAAGCTTTTGTTTGCACTTGTTTCACTTTTGTTTAAAAGTAAAGAGGTAGTA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CAGCACGTAATCCAGGGTGCTGATGTTGTGGGAGGGGACTTAAAACAGAGTAAGGAAATCAGAAACAATTTCCT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CCACACAGAAAAGAACAGAACTCTCTTACCTATGAACCAGAAAAATGTTTTACAAGGGCAGCATGAAGCGGACA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 AAATCTGGAGCAAAGAAGGATTTTATGCTGTTGTCATTTTTCTCAGCATCTTTGTTATTATAGTAACGTGTTTG 518
Query 1 ATGATTCTTTACAGATTAAAAGAAAGATTTCAGCTTTCCTTAAGACAAGACAAAGAGAAAAACCAGGAGATCCA 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ATGATTCTTTACAGATTAAAAGAAAGATTTCAGCTTTCCTTAAGACAAGACAAAGAGAAAAACCAGGAGATCCA 592
Query 75 CCTATCGCCCATCACATTACAGCCAGCACTGTCCGAGGCAAAGACAGTCCACAGCATGGTCCAACCTGAGCAGG 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CCTATCGCCCATCACATTACAGCCAGCACTGTCCGAGGCAAAGACAGTCCACAGCATGGTCCAACCTGAGCAGG 666
Query 149 CCCCAAAGGTACTGAATGTTGTCGTGGACCCTCAAGGCCGAGGTGCTCCTGAGATCAGAGCTACCACCGCTACC 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 667 CCCCAAAGGTACTGAATGTTGTCGTGGACCCTCAAGGCCGAGGTGCTCCTGAGATCAAAGCTACCACCGCTACC 740
Query 223 TCTGTTTGCCCTTCTCCTTTCAAAATGAAGCCCATAGGACTTCAAGAGAGAAGAGGGTCCAACGTATCTCTTAC 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TCTGTTTGCCCTTCTCCTTTCAAAATGAAGCCCATAGGACTTCAAGAGAGAAGAGGGTCCAACGTATCTCTTAC 814
Query 297 ATTGGACATGAGTAGCTTGGGGAACATTGAACCCTTTGTGTCTATACCAACACCACGGGAGAAGGTAGCAATGG 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 ATTGGACATGAGTAGCTTGGGGAACATTGAACCCTTTGTGTCTATACCAACACCACGGGAGAAGGTAGCAATGG 888
Query 371 AGTATCTGCAGTCAGCCAGCCGAATTCTCACAAGGTCTCAGCTGAGGGACGTCGTGGCAAGTTCACATTTACTC 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AGTATCTGCAGTCAGCCAGCCGAATTCTCACAAGGTCTCAGCTGAGGGACGTCGTGGCAAGTTCACATTTACTC 962
Query 445 CAAAGTGAATTCATGGAAATACCAATGAACTTTGTGGATCCCAAAGAAATTGATATTCCGCGTCATGGAACTAA 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CAAAGTGAATTCATGGAAATACCAATGAACTTTGTGGATCCCAAAGAAATTGATATTCCGCGTCATGGAACTAA 1036
Query 519 AAATCGCTATAAGACCATTTTACCAAATCCCCTCAGCAGAGTGTGTTTAAGACCAAAAAATGTAACCGATTCAT 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 AAATCGCTATAAGACCATTTTACCAAATCCCCTCAGCAGAGTGTGTTTAAGACCAAAAAATGTAACCGATTCAT 1110
Query 593 TGAGCACCTACATTAATGCTAATTATATTAGGGGCTACAGTGGCAAGGAGAAAGCCTTCATTGCCACGCAGGGC 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TGAGCACCTACATTAATGCTAATTATATTAGGGGCTACAGTGGCAAGGAGAAAGCCTTCATTGCCACGCAGGGC 1184
Query 667 CCCATGATCAACACCGTGGATGATTTCTGGCAGATGGTTTGGCAGGAAGACAGCCCTGTGATTGTTATGATCAC 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CCCATGATCAACACCGTGGATGATTTCTGGCAGATGGTTTGGCAGGAAGACAGCCCTGTGATTGTTATGATCAC 1258
Query 741 AAAACTCAAAGAAAAAAATGAGAAATGTGTGCTATACTGGCCGGAAAAGAGAGGGATATATGGAAAAGTTGAGG 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AAAACTCAAAGAAAAAAATGAGAAATGTGTGCTATACTGGCCGGAAAAGAGAGGGATATATGGAAAAGTTGAGG 1332
Query 815 TTCTGGTTATCAGTGTAAATGAATGTGATAACTACACCATTCGAAACCTTGTCTTAA----------------- 871
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TTCTGGTTATCAGTGTAAATGAATGTGATAACTACACCATTCGAAACCTTGTCTTAAAGAAATAAATTGCCAGC 1406
Query 872 -------------------------------------------------------------------------- 871
Sbjct 1407 AAGATGGGGGTGATAAAAGGCATTCAGTATTGTGGTTTGGATGACTTTTAGTTCTACAAGTGAATGAGGCATTT 1480
Query 872 -------------------AGCAAGGAAGCCACACCCAACATGTGAAGCATTACTGGTACACCTCATGGCCTGA 926
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GGTGGCTGTTGCTATTTTCAGCAAGGAAGCCACACCCAACATGTGAAGCATTACTGGTACACCTCATGGCCTGA 1554
Query 927 TCACAAGACTCCAGACAGTGCCCAGCCCCTCCTACAGCTCATGCTGGATGTAGAAGAAGACAGACTTGCTTCCC 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TCACAAGACTCCAGACAGTGCCCAGCCCCTCCTACAGCTCATGCTGGATGTAGAAGAAGACAGACTTGCTTCCC 1628
Query 1001 AGGGCCGAGGGCCTGTGGTTGTCCACTGCAGTGCAGGAATAGGTAGAACAGGGTGTTTTATTGCTACATCCATT 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AGGGCCGAGGGCCTGTGGTTGTCCACTGCAGTGCAGGAATAGGTAGAACAGGGTGTTTTATTGCTACATCCATT 1702
Query 1075 GGCTGTCAACAGCTGAAAGAAGAAGGAGTTGTGGATGCACTAAGCATTGTCTGCCAGCTTCGTATGGATAGAGG 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 GGCTGTCAACAGCTGAAAGAAGAAGGAGTTGTGGATGCACTAAGCATTGTCTGCCAGCTTCGTATGGATAGAGG 1776
Query 1149 TGGAATGGTGCAAACCAGTGAGCAGTATGAATTTGTGCACCATGCTCTGTGCCTGTATGAGAGCAGACTTTCAG 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TGGAATGGTGCAAACCAGTGAGCAGTATGAATTTGTGCACCATGCTCTGTGCCTGTATGAGAGCAGACTTTCAG 1850
Query 1223 CAGAGACTGTCCAG------------------------------------------------------------ 1236
||||||||||||||
Sbjct 1851 CAGAGACTGTCCAGTGAGTCATTGAAGACTTGTCAGACCATCAATCTCTTGGGGTGATTAATCAAATTACCCAC 1924
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 1925 CCAAGGCTTCTAGAAGGAGCTTCCTGCAATGGAAGGAAGGAGAAGCTCTGAAGCCCATGTATGGCATGGATTGT 1998
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 1999 GGAAGACTGGGCAACATATTTAAGATTTCCAGCTCCTTGTGTATATGAATGCATTTGTAAGCATCCCCCAAATT 2072
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2073 ATTCTGAAGGTTTTTTGATGATGGAGGTATGATAGGTTTATCACACAGCCTAAGGCAGATTTTGTTTTGTCTGT 2146
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2147 ACTGACTCTATCTGCCACACAGAATGTATGTATGTAATATTCAGTAATAAATGTCATCAGGTGATGACTGGATG 2220
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2221 AGCTGCTGAAGACATTCGTATTATGTGTTAGATGCTTTAATGTTTGCAAAATCTGTCTTGTGAATGGACTGTCA 2294
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2295 GCTGTTAAACTGTTCCTGTTTTGAAGTGCTATTACCTTTCTCAGTTACCAGAATCTTGCTGCTAAAGTTGCAAG 2368
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2369 TGATTGATAATGGATTTTTAACAGAGAAGTCTTTGTTTTTGAAAAACAAAAATCAAAAACAGTAACTATTTTAT 2442
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2443 ATGGAAATGTGTCTTGATAATATTACCTATTAAATGTGTATTTATAGTCCCTCCTATCAAACAATTACAGAGCA 2516
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2517 CAATGATTGTCATTGGGTATATATGTATTTACTCTCTATTATTGGGCATAAAGGTGGCTTCTGCTCCAGAACTC 2590
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2591 TATCCACTGTATTTCCACATCGTGAGTCATTTTACTTTAAAAGGGAAAAACAAATTTGTAGCAACTCTGAAGTA 2664
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2665 TCAAGAGTTTTAACTACTTGTCTCTCTTTTGCTAAGAAGGGATTTTTGAATATGCTATCTACCTGGAATCTCTC 2738
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2739 TCTCAACAAAAGGTATATGCCTTCAGGAATGATATAATCTGTCCCATTTTCGAGGCTCCTTATAAGGACATTTC 2812
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2813 CATGTATGTCCTTACATTTCTGAAAGCTTTCAATCTTCAAGAGACAAAAAAAATTAAAATAACTACCCTCAGCA 2886
Query 1237 -------------------------------------------------------------------------- 1236
Sbjct 2887 AACACTAGCTGTTCTGCTCATATATGAATTTTTAATGCAGCAATGTTGACTTTGTTTCATACTGCCAATAAACT 2960
Query 1237 ------------------ 1236
Sbjct 2961 CTTAATACTAAATACTGA 2978
