Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_01376
Subject:
NR_110892.1
Aligned Length:
3222
Identities:
1183
Gaps:
2039

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTGACAGAAGTAGTAGGAAGTGAGCTGTTCAGAGGCAGGAGGGTCTATTCTTTGCCAAAGGGGGGACCAGAATT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCCCCATGCGAGCTGTTTGAGGACTGGGATGCCGAGAACGCGAGCGATCCGAGCAGGGTTTGTCTGGGCACCGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CGGGGTAGGATCCGGAACGCATTCGGAAGGCTTTTTGCAAGCATTTACTTGGAAGGAGAACTTGGGATCTTTCT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGGAACCCCCCGCCCCGGCTGGATTGGCCGAGCAAGCCTGGAAAATGGTAAATGATCATTTGGATCAATTACAG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  GCTTTTAGCTGGCTTGTCTGTCATAATTCATGATTCGGGGCTGGGAAAAAGACCAACAGCCTACGTGCCAAAAA  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AGGGGCAGAGTTTGATGGAGTTGGGTGGACTTTTCTATGCCATTTGCCTCCACACCTAGAGGATAAGCACTTTT  444

Query    1  -------------------------ATGTTTGACTGTATGGATGTTCTGTCAGTGAGTCCTGGGCAAATCCTGG  49
                                     |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GCAGACATTCAGTGCAAGGGAGATCATGTTTGACTGTATGGATGTTCTGTCAGTGAGTCCTGGGCAAATCCTGG  518

Query   50  ATTTCTACACTGCGAGTCCGTCTTCCTGCATGCTCCAGGAGAAAGCTCTCAAAGCATGCTTCAGTGGATTGACC  123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  ATTTCTACACTGCGAGTCCGTCTTCCTGCATGCTCCAGGAGAAAGCTCTCAAAGCATGCTTCAGTGGATTGACC  592

Query  124  CAAACCGAATGGCAGCATCGGCACACTGCTCAATCAATTGAAACACAGAGCACCAGCTCTGAGGAACTCGTCCC  197
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CAAACCGAATGGCAGCATCGGCACACTGCTCAATCAATTGAAACACAGAGCACCAGCTCTGAGGAACTCGTCCC  666

Query  198  AAGCCCCCCATCTCCACTTCCTCCCCCTCGAGTGTACAAACCCTGCTTCGTCTGCCAGGACAAATCATCAGGGT  271
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  AAGCCCCCCATCTCCACTTCCTCCCCCTCGAGTGTACAAACCCTGCTTCGTCTGCCAGGACAAATCATCAGGGT  740

Query  272  ACCACTATGGGGTCAGCGCCTGTGAGGGATGTAAGGGCTTTTTCCGCAGAAGTATTCAGAAGAATATGATTTAC  345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ACCACTATGGGGTCAGCGCCTGTGAGGGATGTAAGGGCTTTTTCCGCAGAAGTATTCAGAAGAATATGATTTAC  814

Query  346  ACTTGTCACCGAGATAAGAACTGTGTTATTAATAAAGTCACCAGGAATCGATGCCAATACTGTCGACTCCAGAA  419
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  ACTTGTCACCGAGATAAGAACTGTGTTATTAATAAAGTCACCAGGAATCGATGCCAATACTGTCGACTCCAGAA  888

Query  420  GTGCTTTGAAGTGGGAATGTCCAAAGAATCTGTCAGGAATGACAGGAACAAGAAAAAGAAGGAGACTTCGAAGC  493
            |||||||||||||||||||||||||||||                                             
Sbjct  889  GTGCTTTGAAGTGGGAATGTCCAAAGAAT---------------------------------------------  917

Query  494  AAGAATGCACAGAGAGCTATGAAATGACAGCTGAGTTGGACGATCTCACAGAGAAGATCCGAAAAGCTCACCAG  567
                                                                                      
Sbjct  918  --------------------------------------------------------------------------  917

Query  568  GAAACTTTCCCTTCACTCTGCCAGCTGGGTAAATACACCACGAATTCCAGTGCTGACCATCGAGTCCGACTGGA  641
                                                      ||||||||||||||||||||||||||||||||
Sbjct  918  ------------------------------------------AATTCCAGTGCTGACCATCGAGTCCGACTGGA  949

Query  642  CCTGGGCCTCTGGGACAAATTCAGTGAACTGGCCACCAAGTGCATTATTAAGATCGTGGAGTTTGCTAAACGTC  715
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  950  CCTGGGCCTCTGGGACAAATTCAGTGAACTGGCCACCAAGTGCATTATTAAGATCGTGGAGTTTGCTAAACGTC  1023

Query  716  TGCCTGGTTTCACTGGCTTGACCATCGCAGACCAAATTACCCTGCTGAAGGCCGCCTGCCTGGACATCCTGATT  789
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024  TGCCTGGTTTCACTGGCTTGACCATCGCAGACCAAATTACCCTGCTGAAGGCCGCCTGCCTGGACATCCTGATT  1097

Query  790  CTTAGAATTTGCACCAGGTATACCCCAGAACAAGACACCATGACTTTCTCAGACGGCCTTACCCTAAATCGAAC  863
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098  CTTAGAATTTGCACCAGGTATACCCCAGAACAAGACACCATGACTTTCTCAGACGGCCTTACCCTAAATCGAAC  1171

Query  864  TCAGATGCACAATGCTGGATTTGGTCCTCTGACTGACCTTGTGTTCACCTTTGCCAACCAGCTCCTGCCTTTGG  937
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172  TCAGATGCACAATGCTGGATTTGGTCCTCTGACTGACCTTGTGTTCACCTTTGCCAACCAGCTCCTGCCTTTGG  1245

Query  938  AAATGGATGACACAGAAACAGGCCTTCTCAGTGCCATCTGCTTAATCTGTGGAGACCGCCAGGACCTTGAGGAA  1011
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246  AAATGGATGACACAGAAACAGGCCTTCTCAGTGCCATCTGCTTAATCTGTGGAGACCGCCAGGACCTTGAGGAA  1319

Query 1012  CCGACAAAAGTAGATAAGCTACAAGAACCATTGCTGGAAGCACTAAAAATTTATATCAGAAAAAGACGACCCAG  1085
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320  CCGACAAAAGTAGATAAGCTACAAGAACCATTGCTGGAAGCACTAAAAATTTATATCAGAAAAAGACGACCCAG  1393

Query 1086  CAAGCCTCACATGTTTCCAAAGATCTTAATGAAAATCACAGATCTCCGTAGCATCAGTGCTAAAGGTGCAGAGC  1159
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1394  CAAGCCTCACATGTTTCCAAAGATCTTAATGAAAATCACAGATCTCCGTAGCATCAGTGCTAAAGGTGCAGAGC  1467

Query 1160  GTGTAATTACCTTGAAAATGGAAATTCCTGGATCAATGCCACCTCTCATTCAAGAAATGCTGGAGAATTCTGAA  1233
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1468  GTGTAATTACCTTGAAAATGGAAATTCCTGGATCAATGCCACCTCTCATTCAAGAAATGCTGGAGAATTCTGAA  1541

Query 1234  GGACATGAACCCTTGACCCCAAGTTCAAGTGGGAACACAGCAGAGCACAGTCCTAGCATCTCACCCAGCTCAGT  1307
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1542  GGACATGAACCCTTGACCCCAAGTTCAAGTGGGAACACAGCAGAGCACAGTCCTAGCATCTCACCCAGCTCAGT  1615

Query 1308  GGAAAACAGTGGGGTCAGTCAGTCACCACTCGTGCAA-------------------------------------  1344
            |||||||||||||||||||||||||||||||||||||                                     
Sbjct 1616  GGAAAACAGTGGGGTCAGTCAGTCACCACTCGTGCAATAAGACATTTTCTAGCTACTTCAAACATTCCCCAGTA  1689

Query 1345  --------------------------------------------------------------------------  1344
                                                                                      
Sbjct 1690  CCTTCAGTTCCAGGATTTAAAATGCAAGAAAAAACATTTTTACTGCTGCTTAGTTTTTGGACTGAAAAGATATT  1763

Query 1345  --------------------------------------------------------------------------  1344
                                                                                      
Sbjct 1764  AAAACTCAAGAAGGACCAAGAAGTTTTCATATGTATCAATATATATACTCCTCACTGTGTAACTTACCTAGAAA  1837

Query 1345  --------------------------------------------------------------------------  1344
                                                                                      
Sbjct 1838  TACAAACTTTTCCAATTTTAAAAAATCAGCCATTTCATGCAACCAGAAACTAGTTAAAAGCTTCTATTTTCCTC  1911

Query 1345  --------------------------------------------------------------------------  1344
                                                                                      
Sbjct 1912  TTTGAACACTCAAGATTGCATGGCAAAGACCCAGTCAAAATGATTTACCCCTGGTTAAGTTTCTGAAGACTTTG  1985

Query 1345  --------------------------------------------------------------------------  1344
                                                                                      
Sbjct 1986  TACATACAGAAGTATGGCTCTGTTCTTTCTATACTGTATGTTTGGTGCTTTCCTTTTGTCTTGCATACTCAAAA  2059

Query 1345  --------------------------------------------------------------------------  1344
                                                                                      
Sbjct 2060  TAACCATGACACCAAGGTTATGAAATAGACTACTGTACACGTCTACCTAGGTTCAAAAAGATAACTGTCTTGCT  2133

Query 1345  --------------------------------------------------------------------------  1344
                                                                                      
Sbjct 2134  TTCATGGAATAGTCAAGACATCAAGGTAAGGAAACAGGACTATTGACAGGACTATTGTACAGTATGACAAGATA  2207

Query 1345  --------------------------------------------------------------------------  1344
                                                                                      
Sbjct 2208  AGGCTGAAGATATTCTACTTTAGTTAGTATGGAAGCTTGTCTTTGCTCTTTCTGATGCTCTCAAACTGCATCTT  2281

Query 1345  --------------------------------------------------------------------------  1344
                                                                                      
Sbjct 2282  TTATTTCATGTTGCCCAGTAAAAGTATACAAATTCCCTGCACTAGCAGAAGAGAATTCTGTATCAGTGTAACTG  2355

Query 1345  --------------------------------------------------------------------------  1344
                                                                                      
Sbjct 2356  CCAGTTCAGTTAATCAAATGTCATTTGTTCAATTGTTAATGTCACTTTAAATTAAAAGTGGTTTATTACTTGTT  2429

Query 1345  --------------------------------------------------------------------------  1344
                                                                                      
Sbjct 2430  TAATGACATAACTACACAGTTAGTTAAAAAAAATTTTTTTACAGTAATGATAGCCTCCAAGGCAGAAACACTTT  2503

Query 1345  --------------------------------------------------------------------------  1344
                                                                                      
Sbjct 2504  TCAGTGTTAAGTTTTTGTTTACTTGTTCACAAGCCATTAGGGAAATTTCATGGGATAATTAGCAGGCTGGTCTA  2577

Query 1345  --------------------------------------------------------------------------  1344
                                                                                      
Sbjct 2578  CCACCTGGACCATGTAACTCTAGTGTCCTTCCTGATTCATGCCTGATATTGGGATTTTTTTTTCCAGCCTTCTT  2651

Query 1345  --------------------------------------------------------------------------  1344
                                                                                      
Sbjct 2652  GATGCCAAGGGGCTAATTAATATTAACAACTCCCAAAGAAACAGGCATAGAATCTGCCTCCTTTGACCTTGTTC  2725

Query 1345  --------------------------------------------------------------------------  1344
                                                                                      
Sbjct 2726  AATCACTATGAAGCAGAGTGAAAGCTGTGGTAGAGTGGTTAACAGATACAAGTGTCAGTTTCTTAGTTCTCATT  2799

Query 1345  --------------------------------------------------------------------------  1344
                                                                                      
Sbjct 2800  TAAGCACTAGTGGAATTTTTTTTTTTTGATATATTAGCAAGTCTGTGATGTACTTTCACTGGCTCTGTTTGTAC  2873

Query 1345  --------------------------------------------------------------------------  1344
                                                                                      
Sbjct 2874  ATTGAGATTGTTTGTTTAACAATGCTTTCTATGTTCATATACTGTTTACCTTTTTCCATGGAGTCTCCTGGCAA  2947

Query 1345  --------------------------------------------------------------------------  1344
                                                                                      
Sbjct 2948  AGAATAAAATATATTTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  3021

Query 1345  ----------------------------------------  1344
                                                    
Sbjct 3022  AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA  3061

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