Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_01376
- Subject:
- NR_110893.1
- Aligned Length:
- 3222
- Identities:
- 1139
- Gaps:
- 2083
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTGACAGAAGTAGTAGGAAGTGAGCTGTTCAGAGGCAGGAGGGTCTATTCTTTGCCAAAGGGGGGACCAGAATT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCCCCATGCGAGCTGTTTGAGGACTGGGATGCCGAGAACGCGAGCGATCCGAGCAGGGTTTGTCTGGGCACCGT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CGGGGTAGGATCCGGAACGCATTCGGAAGGCTTTTTGCAAGCATTTACTTGGAAGGAGAACTTGGGATCTTTCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GGGAACCCCCCGCCCCGGCTGGATTGGCCGAGCAAGCCTGGAAAATGGTAAATGATCATTTGGATCAATTACAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCTTTTAGCTGGCTTGTCTGTCATAATTCATGATTCGGGGCTGGGAAAAAGACCAACAGCCTACGTGCCAAAAA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AGGGGCAGAGTTTGATGGAGTTGGGTGGACTTTTCTATGCCATTTGCCTCCACACCTAGAGGATAAGCACTTTT 444
Query 1 -------------------------ATGTTTGACTGTATGGATGTTCTGTCAGTGAGTCCTGGGCAAATCCTGG 49
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GCAGACATTCAGTGCAAGGGAGATCATGTTTGACTGTATGGATGTTCTGTCAGTGAGTCCTGGGCAAATCCTGG 518
Query 50 ATTTCTACACTGCGAGTCCGTCTTCCTGCATGCTCCAGGAGAAAGCTCTCAAAGCATGCTTCAGTGGATTGACC 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ATTTCTACACTGCGAGTCCGTCTTCCTGCATGCTCCAGGAGAAAGCTCTCAAAGCATGCTTCAGTGGATTGACC 592
Query 124 CAAACCGAATGGCAGCATCGGCACACTGCTCAATCAATTGAAACACAGAGCACCAGCTCTGAGGAACTCGTCCC 197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CAAACCGAATGGCAGCATCGGCACACTGCTCAATCAATTGAAACACAGAGCACCAGCTCTGAGGAACTCGTCCC 666
Query 198 AAGCCCCCCATCTCCACTTCCTCCCCCTCGAGTGTACAAACCCTGCTTCGTCTGCCAGGACAAATCATCAGGGT 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 AAGCCCCCCATCTCCACTTCCTCCCCCTCGAGTGTACAAACCCTGCTTCGTCTGCCAGGACAAATCATCAGGGT 740
Query 272 ACCACTATGGGGTCAGCGCCTGTGAGGGATGTAAGGGCTTTTTCCGCAGAAGTATTCAGAAGAATATGATTTAC 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 ACCACTATGGGGTCAGCGCCTGTGAGGGATGTAAGGGCTTTTTCCGCAGAAGTATTCAGAAGAATATGATTTAC 814
Query 346 ACTTGTCACCGAGATAAGAACTGTGTTATTAATAAAGTCACCAGGAATCGATGCCAATACTGTCGACTCCAGAA 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 ACTTGTCACCGAGATAAGAACTGTGTTATTAATAAAGTCACCAGGAATCGATGCCAATACTGTCGACTCCAGAA 888
Query 420 GTGCTTTGAAGTGGGAATGTCCAAAGAATCTGTCAGGAATGACAGGAACAAGAAAAAGAAGGAGACTTCGAAGC 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GTGCTTTGAAGTGGGAATGTCCAAAGAATCTGTCAGGAATGACAGGAACAAGAAAAAGAAGGAGACTTCGAAGC 962
Query 494 AAGAATGCACAGAGAGCTATGAAATGACAGCTGAGTTGGACGATCTCACAGAGAAGATCCGAAAAGCTCACCAG 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AAGAATGCACAGAGAGCTATGAAATGACAGCTGAGTTGGACGATCTCACAGAGAAGATCCGAAAAGCTCACCAG 1036
Query 568 GAAACTTTCCCTTCACTCTGCCAGCTGGGTAAATACACCACGAATTCCAGTGCTGACCATCGAGTCCGACTGGA 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GAAACTTTCCCTTCACTCTGCCAGCTGGGTAAATACACCACGAATTCCAGTGCTGACCATCGAGTCCGACTGGA 1110
Query 642 CCTGGGCCTCTGGGACAAATTCAGTGAACTGGCCACCAAGTGCATTATTAAGATCGTGGAGTTTGCTAAACGTC 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 CCTGGGCCTCTGGGACAAATTCAGTGAACTGGCCACCAAGTGCATTATTAAGATCGTGGAGTTTGCTAAACGTC 1184
Query 716 TGCCTGGTTTCACTGGCTTGACCATCGCAGACCAAATTACCCTGCTGAAGGCCGCCTGCCTGGACATCCTGATT 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TGCCTGGTTTCACTGGCTTGACCATCGCAGACCAAATTACCCTGCTGAAGGCCGCCTGCCTGGACATCCT---- 1254
Query 790 CTTAGAATTTGCACCAGGTATACCCCAGAACAAGACACCATGACTTTCTCAGACGGCCTTACCCTAAATCGAAC 863
Sbjct 1255 -------------------------------------------------------------------------- 1254
Query 864 TCAGATGCACAATGCTGGATTTGGTCCTCTGACTGACCTTGTGTTCACCTTTGCCAACCAGCTCCTGCCTTTGG 937
Sbjct 1255 -------------------------------------------------------------------------- 1254
Query 938 AAATGGATGACACAGAAACAGGCCTTCTCAGTGCCATCTGCTTAATCTGTGGAGACCGCCAGGACCTTGAGGAA 1011
|||||||||||||||||||||
Sbjct 1255 -----------------------------------------------------GACCGCCAGGACCTTGAGGAA 1275
Query 1012 CCGACAAAAGTAGATAAGCTACAAGAACCATTGCTGGAAGCACTAAAAATTTATATCAGAAAAAGACGACCCAG 1085
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 CCGACAAAAGTAGATAAGCTACAAGAACCATTGCTGGAAGCACTAAAAATTTATATCAGAAAAAGACGACCCAG 1349
Query 1086 CAAGCCTCACATGTTTCCAAAGATCTTAATGAAAATCACAGATCTCCGTAGCATCAGTGCTAAAGGTGCAGAGC 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1350 CAAGCCTCACATGTTTCCAAAGATCTTAATGAAAATCACAGATCTCCGTAGCATCAGTGCTAAAGGTGCAGAGC 1423
Query 1160 GTGTAATTACCTTGAAAATGGAAATTCCTGGATCAATGCCACCTCTCATTCAAGAAATGCTGGAGAATTCTGAA 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1424 GTGTAATTACCTTGAAAATGGAAATTCCTGGATCAATGCCACCTCTCATTCAAGAAATGCTGGAGAATTCTGAA 1497
Query 1234 GGACATGAACCCTTGACCCCAAGTTCAAGTGGGAACACAGCAGAGCACAGTCCTAGCATCTCACCCAGCTCAGT 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 GGACATGAACCCTTGACCCCAAGTTCAAGTGGGAACACAGCAGAGCACAGTCCTAGCATCTCACCCAGCTCAGT 1571
Query 1308 GGAAAACAGTGGGGTCAGTCAGTCACCACTCGTGCAA------------------------------------- 1344
|||||||||||||||||||||||||||||||||||||
Sbjct 1572 GGAAAACAGTGGGGTCAGTCAGTCACCACTCGTGCAATAAGACATTTTCTAGCTACTTCAAACATTCCCCAGTA 1645
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 1646 CCTTCAGTTCCAGGATTTAAAATGCAAGAAAAAACATTTTTACTGCTGCTTAGTTTTTGGACTGAAAAGATATT 1719
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 1720 AAAACTCAAGAAGGACCAAGAAGTTTTCATATGTATCAATATATATACTCCTCACTGTGTAACTTACCTAGAAA 1793
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 1794 TACAAACTTTTCCAATTTTAAAAAATCAGCCATTTCATGCAACCAGAAACTAGTTAAAAGCTTCTATTTTCCTC 1867
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 1868 TTTGAACACTCAAGATTGCATGGCAAAGACCCAGTCAAAATGATTTACCCCTGGTTAAGTTTCTGAAGACTTTG 1941
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 1942 TACATACAGAAGTATGGCTCTGTTCTTTCTATACTGTATGTTTGGTGCTTTCCTTTTGTCTTGCATACTCAAAA 2015
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2016 TAACCATGACACCAAGGTTATGAAATAGACTACTGTACACGTCTACCTAGGTTCAAAAAGATAACTGTCTTGCT 2089
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2090 TTCATGGAATAGTCAAGACATCAAGGTAAGGAAACAGGACTATTGACAGGACTATTGTACAGTATGACAAGATA 2163
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2164 AGGCTGAAGATATTCTACTTTAGTTAGTATGGAAGCTTGTCTTTGCTCTTTCTGATGCTCTCAAACTGCATCTT 2237
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2238 TTATTTCATGTTGCCCAGTAAAAGTATACAAATTCCCTGCACTAGCAGAAGAGAATTCTGTATCAGTGTAACTG 2311
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2312 CCAGTTCAGTTAATCAAATGTCATTTGTTCAATTGTTAATGTCACTTTAAATTAAAAGTGGTTTATTACTTGTT 2385
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2386 TAATGACATAACTACACAGTTAGTTAAAAAAAATTTTTTTACAGTAATGATAGCCTCCAAGGCAGAAACACTTT 2459
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2460 TCAGTGTTAAGTTTTTGTTTACTTGTTCACAAGCCATTAGGGAAATTTCATGGGATAATTAGCAGGCTGGTCTA 2533
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2534 CCACCTGGACCATGTAACTCTAGTGTCCTTCCTGATTCATGCCTGATATTGGGATTTTTTTTTCCAGCCTTCTT 2607
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2608 GATGCCAAGGGGCTAATTAATATTAACAACTCCCAAAGAAACAGGCATAGAATCTGCCTCCTTTGACCTTGTTC 2681
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2682 AATCACTATGAAGCAGAGTGAAAGCTGTGGTAGAGTGGTTAACAGATACAAGTGTCAGTTTCTTAGTTCTCATT 2755
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2756 TAAGCACTAGTGGAATTTTTTTTTTTTGATATATTAGCAAGTCTGTGATGTACTTTCACTGGCTCTGTTTGTAC 2829
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2830 ATTGAGATTGTTTGTTTAACAATGCTTTCTATGTTCATATACTGTTTACCTTTTTCCATGGAGTCTCCTGGCAA 2903
Query 1345 -------------------------------------------------------------------------- 1344
Sbjct 2904 AGAATAAAATATATTTATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2977
Query 1345 ---------------------------------------- 1344
Sbjct 2978 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3017
