Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_01521
- Subject:
- XR_388324.3
- Aligned Length:
- 5093
- Identities:
- 703
- Gaps:
- 4349
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTTGCCTCAGCTTCCGGAGTGATAGGATTTCAGGCACACAAGCTTAAGTCCAGATTGGTTTGCTTTTATTATAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTCGAGTTCATTAACAACACTACAAGGCCGTATGATTTCACACGTAAGGCTCTTCTATTCCCGTTATTACAAAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CAAAGAAGCAAAATTGTGGTATCCAATGCAAGAATCCTTTTGCAGATAATCTTGGCAAAATAAACAAATAAATA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AATAATCTCCCTAGACCAGCACAGAACCGGGATCTCGGCTCTGCAGTTAAACTGTTTTATCACTCTTCCTTTTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CATCCTTAGAAAGGAGGAAGAGGAAAACTCAAGGCACAGTTTTCATTTAGATAGATATGGAGGATCCGTCTAGA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CACTTTAACTAAGATGCAGCCCACCGCAGGTTCCCAGAGGCAGAAGCCACACTGCTCCGCTTCGGCTTTTAAAT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GAAATCACCTGCAACTCCCGCCGGCGGCACCGAAGTGCAGAAGATGCCCAGGTTTCCGGAGCAACAGCTCAGCG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCATCTATCTCCGCCCCGCGGCGCCTTTCCCGCCAAAGGCCGTTACCACCGCGGAGCATGGTGGGACACGCTTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CAAGATAGGTTTCACCCAATCTTTTTAGAGCGCCGAGCTGCTTTCAGAGAGGGTCTACCCCCGAGGTGGCCGAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GATTCTGGACTCAGTGGGGATTAATAATAACCGCTTTAACCAGAGCATGTGATTTTTACTAAACGCCTGGACGT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TCCAGCAGCCAGTCAACCCGCCAGGACGCGAGGGACTTTTTCCCCTCCGTGCGGAGGGTGACGTCGCGCGTGCG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 CGAGCGTGCTTCTCAGCACCCGTTAGAGGCGTGCGCCTGCGCACTGGGAGGGACGAGCCGCTTCCTCCGGCTTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TCTTCCTCCCCCTCCCCCCCGGTATCAGTGCGCCGAGCTGATAAAGGCGCCATTTTGGAGCGGCCGCGGGAGAC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GTGGTGCCGCTGAGGGCTCGCTCTGCCGTACGCTAGGCTTGGTAGGAAGGCCTCTTTTTTTTTTTTTCCTTCCC 1036
Query 1 ----------------------------------------ATGTCGGGAGGTGGTGTGATTCGTGGCCCCGCAG 34
||||||||||||||||||||.||||||||.||.|
Sbjct 1037 CCCCCCCGAGTCCGCGCTTTTCGTCGTCGCCGCCGCCGCCATGTCGGGAGGTGGTGTGATCCGTGGCCCGGCGG 1110
Query 35 GGAACAACGATTGCCGCATCTACGTGGGTAACTTACCTCCAGACATCCGAACCAAGGACATTGAGGACGTGTTC 108
||||||||||.|||||||||||||||||||||.|||||||.||.|||||||||||||||||.|||||||||||.
Sbjct 1111 GGAACAACGACTGCCGCATCTACGTGGGTAACCTACCTCCGGATATCCGAACCAAGGACATCGAGGACGTGTTT 1184
Query 109 TACAAATACGGCGCTATCCGCGACATCGACCTCAAGAATCGCCGCGGGGGACCGCCCTTCGCCTTCGTTGAGTT 182
||||||||||||||.|||||||||||||||||.|||||.|||||||||||||||||||||||||||||||||||
Sbjct 1185 TACAAATACGGCGCCATCCGCGACATCGACCTGAAGAACCGCCGCGGGGGACCGCCCTTCGCCTTCGTTGAGTT 1258
Query 183 CGAGGACCCGCGAGACGCGGAAGACGCGGTGTATGGTCGCGACGGCTATGATTACGATGGGTACCGTCTGCGGG 256
||||||||||||||||||||||||.||||||||.||||||||||||||.||.|||||.||.|||||.|||||||
Sbjct 1259 CGAGGACCCGCGAGACGCGGAAGATGCGGTGTACGGTCGCGACGGCTACGACTACGACGGCTACCGGCTGCGGG 1332
Query 257 TGGAGTTTCCTCGAAGCGGCCGTGGAACAGGCCGAGGCGGCGGCGGGGGTGGAGGTGGCGGAGCTCCCCGAGGT 330
|.||||||||.|||||||||||.||.||.||||||||||||||||||||||||||.|||||.||.||..||||.
Sbjct 1333 TAGAGTTTCCCCGAAGCGGCCGCGGGACCGGCCGAGGCGGCGGCGGGGGTGGAGGCGGCGGCGCCCCGAGAGGC 1406
Query 331 CGCTATGGCCCCCCATCCAGGCGGTCTGAAAACAGAGTGGTTGTCTCTGGACTGCCTCCAAGTGGAAGTTGGCA 404
|||||||||||.||.|||||||||||.||.|||||||||||||||||||||||||||||.||||||||.|||||
Sbjct 1407 CGCTATGGCCCGCCGTCCAGGCGGTCCGAGAACAGAGTGGTTGTCTCTGGACTGCCTCCGAGTGGAAGCTGGCA 1480
Query 405 GGATTTAAAGGATCACATGCGTGAAGCAGGTGATGTATGTTATGCTGATGTTTACCGAGATGGCACTGGTGTCG 478
|||.||||||||||||||||||||.|||||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct 1481 GGACTTAAAGGATCACATGCGTGAGGCAGGTGATGTATGTTACGCTGATGTTTACCGAGATGGCACTGGTGTCG 1554
Query 479 TGGAGTTTGTACGGAAAGAAGATATGACCTATGCAGTTCGAAAACTGGATAACACTAAGTTTAGATCTCATGAG 552
||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 1555 TGGAGTTTGTACGGAAAGAAGATATGACGTATGCAGTTCGAAAACTGGATAACACTAAGTTTAGATCTCACGAG 1628
Query 553 GGAGAAACTGCCTACATCCGGGTTAAAGTTGATGGGCCCAGAAGTCCAAGTTATGGAAGATCTCGATCTCGAAG 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GGAGAAACTGCCTACATCCGGGTTAAAGTTGATGGGCCCAGAAGTCCAAGTTATGGAAGATCTCGATCTCGAAG 1702
Query 627 CCGTAGTCGTAGCAGAAGCCGTAGCAGAAGCAACAGCAGGAGTCGCAGTTACTCCCCAAGGAGAAGCAGAGGAT 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 CCGTAGTCGTAGCAGAAGCCGTAGCAGAAGCAACAGCAGGAGTCGCAGTTACTCCCCAAGGAGAAGCAGAGGAT 1776
Query 701 CACCACGCTATTCTCCCCGTCATAGCAGATCTCGCTCTCGTACA------------------------------ 744
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 CACCACGCTATTCTCCCCGTCATAGCAGATCTCGCTCTCGTACATAAGATGATTGGTGACACTTTTTGTAGAAC 1850
Query 745 -------------------------------------------------------------------------- 744
Sbjct 1851 CCATGTTGTATACAGTTTTCCTTTACTCAGTACAATCTTTTCATTTTTTTAATTCAAGCTGTTTTGTTCAGAAT 1924
Query 745 -------------------------------------------------------------------------- 744
Sbjct 1925 GGGCTAAAGTGTTGAATTGCATTCTTGTGTAATATCCCCTTGCTCCTAACATCTACATTCCCCTCATGTCTTTG 1998
Query 745 -------------------------------------------------------------------------- 744
Sbjct 1999 GTAACTTGTATTTTAAGTGATGTCATAGACAGGATTGTTTAAATTTAGTTAATTTCCATGCTCTTCAGACTGTG 2072
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2073 ATATTATGTAAATGTCTATTCTGCTCTGGTTTGTGTGAAATGGGATGTTGGGGGTGTTTGTGGTTATCTTACTT 2146
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2147 GGGGGAAGTTCTTATGTTTATCTTGCTTTTCATGTGTCTTTCTGTAGACATATCTGAAGAGATGGATTAAGAAT 2220
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2221 GCTTTGGATTAAGGATTGTGGAGCACATTTCAATCATTTTAGGATTGTCAAAAGGAGGATTGAGGAGGATCAGA 2294
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2295 TCAATAATGGAGGCAATGGTTTGGATTGGAGAGGGCTCACTGGATCCCAATCCTTGGAGCTGGATCATTGGATT 2368
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2369 CAAATCATAATGTGGATAGGATAGGGAGGATGAATTACCAGGATTCATGGAGCGGGATCAGATTACCAGGAACA 2442
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2443 TAGGAGTGGATTCCTTCCTGCCCCAACCAAACCGCATTCGTGTGGATTTTTTTTTCATTCAACTTAATTGGCTA 2516
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2517 TTCCAAAGAATTTTTTTCCTATTTTTGACGATTGGAGCCCTTAAGATGCACGATGGAATTGTGTTTTGCATTTT 2590
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2591 TTGGTAAAAGGAGCAAAGCGAGGACCTGGAGATATACGCTGGAGCAATCTCCTTGGAAGGATTCAGCACGAGTA 2664
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2665 GATGGTAAACATTTAAAGGGGAAAAGGGGGGGTTTGTTTAAAATAGTAAATCAGTAAGTCACTTCTAAATTTAA 2738
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2739 AGAAAACAAAATTGGAGTTGAAGAATAAGTAGGTTTCCAATTGGCTATTGCCGTTTTTCTTTGAAAAAAATAAA 2812
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2813 CATTTTTTAAAAAACGATGCATGGTTGTCCTTTTTCCTCTTGTAAAATTTTGATTGGGTAACTAGTGTATCAGT 2886
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2887 TATTTAATTTGATAAGATTCTGATTCTGTTTATGTGTTAGTAAATTAAAGATTCTAATAAATGATGACTGTCTC 2960
Query 745 -------------------------------------------------------------------------- 744
Sbjct 2961 TGTTGTGGAAGTCTTAAGAGCATAATAAACTGAGTGTAAGGCAGTTACATACGTAACAGTTGTGTAGAGGGTAA 3034
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3035 TGATCTGGAAAGTAATCTTTCATATTTTGCTAAAGAACTTACAGTTGCTGTTTATTTTGGTAATGCTTTAGACA 3108
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3109 AAATAGGCTTTTGTACAAAGTTTGATAGCTAATCAATTTTAGCTTTGAGATTCTCAGTGGAACTCAAATTCAGT 3182
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3183 ATTAACATTAGGAGACAAAATAGACTACACAGTTTTTTTTTTTTTAAATTTTGGATAGTGTGCTGTCAAATGCT 3256
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3257 TATTGGGTTAATAAATACATTATAAATCTTTTCAGCCATAGAGTGTTCTGTCGCCAAACTGTTCTGTATTGAGT 3330
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3331 CAGCAATTATATATATATCTTAGTCTAGTCTACTGTTGTATCTCTACTGATAACCCCTTGAAGCTTAATCTTCA 3404
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3405 TCTTAATTGGTTTGGAGAATGGAACTTTTATTTAAAATCCCAAGCTTGTGATTTCCTCCTGGCTAGAATGAATA 3478
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3479 GACCACTATTCACCACAGTAGAAATAGCTAGATCTTTAACTTTCCTTGAGTTGCAGGCTAAATATGATATTGTT 3552
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3553 CAGATGTAATGTAGAATATAGGGGAGACCAGAAATTTTTGCTAGTGAAAGAAACAGGTTTCAAGAAATTTGCAT 3626
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3627 GAGATCTCAGCCTGCTCATTTTAATGACCGCATACACTGTCCTGAAAGAGAAACTAATTCTTTTAAGTTCAAAA 3700
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3701 CTAGGATTTCACTTCAGGAGATGTGTTTAGTAGATGCATTAAGGTTAGGTAGCTGTGTTACAGAACTCAAAGTA 3774
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3775 CAACTAAAAGGATGAGGAATTAGCATAGTTAAACATGGTATAATTGGAAATTTATGGTGTTTTAAAATACATTG 3848
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3849 TTTTCCTCCAGAGAACCTCACTCTACTCTGGTCTAGACTGGGCCCAAAACTCCAAAGTAAATCCAGTCTCCCAG 3922
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3923 ATTCTGGGATTAGCCATGAAGCACCATGCCCAGCTTACTAAAGTAGTATTAAAAGGTTAAAGCCAGCTAGATAA 3996
Query 745 -------------------------------------------------------------------------- 744
Sbjct 3997 ATGCAAATGTGGGTTTACTTTGAATGCTTTGGAAACGGGACCAAGAATGGCCTGTTTATAGTAGTTCAGTTGTA 4070
Query 745 -------------------------------------------------------------------------- 744
Sbjct 4071 GATTGAAATGAGCAAAGTGTTCTTTGCCTCACTGTAGGCTTATGTTTGAACACTAGTGAGCACAGCGTAGGTTT 4144
Query 745 -------------------------------------------------------------------------- 744
Sbjct 4145 TAAAGCTTAGGAAATAGGGCTGTACCCATACTGACAGTTGATACCACTTTGGAACTACAAATACTTTGATTTCT 4218
Query 745 -------------------------------------------------------------------------- 744
Sbjct 4219 ACTCCCCGCCCCCCTCTGTTCCCTTAGGATATTGTAGGGAAACCTATGATTAGTTTTTCTAACCACGAAAGCAC 4292
Query 745 -------------------------------------------------------------------------- 744
Sbjct 4293 TTAAATCTCTTTAAGCAAGTACTTTCATAACTTCTGATTGAATAACCCAACTTGCTGTTCAGCTCATCCTACTG 4366
Query 745 -------------------------------------------------------------------------- 744
Sbjct 4367 GAGACAAAGGTAAGACACATTTTCTGATACCTAGTTTGGGATCTGGATTTTAAGAACTAAAGTTGTGATGAATA 4440
Query 745 -------------------------------------------------------------------------- 744
Sbjct 4441 ATTGCTCCTGACTTGCAATGTTCCTCTCTTCCTCCCAGCTTTATATTTTTAATAGTTTTGAGTGTATAAATCTA 4514
Query 745 -------------------------------------------------------------------------- 744
Sbjct 4515 CTCATCTCAATTCTGGAGTTGAATATGATAAATTCCAAGATCTGTCTATGAGCCATGCTTTTGTAGGGGTGGTG 4588
Query 745 -------------------------------------------------------------------------- 744
Sbjct 4589 CTATTTTCAGCATTCTGAGGTCAAGGTCAACTTTTGGTGTTTGCCTTTTTGCTTTGTATATGAAATTTGTAGTG 4662
Query 745 -------------------------------------------------------------------------- 744
Sbjct 4663 AAATTACAAATGAAATAAATTATATGTATTTAAATAGTATTAAAAGGAGAGAAAGTATTAGACTGAGTTCTGTT 4736
Query 745 -------------------------------------------------------------------------- 744
Sbjct 4737 ATAACAACAACCACTTGTAGCTTATTTCCATCATAATTTGATGATAGATTGATAACCCACAATACTGGAATACC 4810
Query 745 -------------------------------------------------------------------------- 744
Sbjct 4811 ACAGATTGTTTTTATTGAGCAAAATGAATGTAAAATCTGGCCAGAGTAGATGCCTTTATTGTGTAATTTGTGTA 4884
Query 745 -------------------------------------------------------------------------- 744
Sbjct 4885 AAAGTCACATAGGCATTGTTGAAGGTGTTTTATATATATGAAGTATATGTGATAAGATCTTCATGTAAAGTCTG 4958
Query 745 -------------------------------------------------------------------------- 744
Sbjct 4959 AACAACCATGGATCCCAAATATATATCTAGTTTGGGTGAGCAAGGAGTTGTAGAATTGTACTAGTACTGCAGAG 5032
Query 745 ------------------------------------------------------------- 744
Sbjct 5033 GATTAATGTTACTATATGTAATTTTGGGAGTGAATAAAAAGCTGTTAATTTGGAACCTTTA 5093
