Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_01576
Subject:
NM_009230.3
Aligned Length:
1655
Identities:
1362
Gaps:
40

Alignment

Query    1  ATGGTGGGTGAAGAGAAGATGTCTCTAAGAAACCGGCTGTCAAAGTCCAGGGAAAATCCTGAGGAAGATGAAGA  74
                              |||||.||||||||||||||||||||.||..||||.|||||||||.|||||||||.
Sbjct    1  ------------------ATGTCACTAAGAAACCGGCTGTCAAAATCTGGGGAGAATCCTGAGCAAGATGAAGC  56

Query   75  CCAGAGAAA--CCCTGCAAAGGAGTCCCTAGAGACACCT--AGTAATGGTCGAATTGACATAAAACAGTTGATA  144
            |||||.|||  .|.||                |||||.|  ||.|||||||..|||..|||.|||||.||||||
Sbjct   57  CCAGAAAAATTTCATG----------------GACACATACAGAAATGGTCACATTACCATGAAACAATTGATA  114

Query  145  GCAAAGAAGATAAAGTTGACAGCAGAGGCAGAGGAATTGAAGCCATTTTTTATGAAGGAAGTTGGCAGTCACTT  218
            ||.|||||||....||||.||||||||||.|||||..||||||||.|.|||||||||||||||||..|.|||||
Sbjct  115  GCCAAGAAGAGGCTGTTGGCAGCAGAGGCGGAGGAGCTGAAGCCACTATTTATGAAGGAAGTTGGGTGCCACTT  188

Query  219  TGATGATTTTGTGACCAATCTCATTGAAAAGTCAGCATCATTAGATAATGGTGGGTGCGCTCTCACAACCTTTT  292
            .|||||.|||||||||||.||||||||||||||.|||||..|.||.|||||||||||.||.|||||||||||.|
Sbjct  189  CGATGACTTTGTGACCAACCTCATTGAAAAGTCCGCATCGCTGGACAATGGTGGGTGTGCACTCACAACCTTCT  262

Query  293  CTGTTCTTGAAGGAGAGAAAAACAACCATAGAGCGAAGGATTTGAGAGCACCTCCAGAACAAGGAAAGATTTTT  366
            |..|||||||||.|..||||||.|||||.|||||.||.|||.||||||||||||||||||||||.|||||||||
Sbjct  263  CCATTCTTGAAGAAATGAAAAAGAACCACAGAGCCAAAGATCTGAGAGCACCTCCAGAACAAGGGAAGATTTTT  336

Query  367  ATTGCAAGGCGCTCTCTCTTAGATGAACTGCTTGAAGTGGACCACATCAGAACAATATATCACATGTTTATTGC  440
            |||.||||||..|||||.|||||.||.|||.|||||||||||||||||||||||||.||.||||||||.||.||
Sbjct  337  ATTTCAAGGCAGTCTCTTTTAGACGAGCTGTTTGAAGTGGACCACATCAGAACAATTTACCACATGTTCATCGC  410

Query  441  CCTCCTCATTCTCTTTATCCTCAGCACACTTGTAGTAGATTACATTGATGAAGGAAGGCTGGTGCTTGAGTTCA  514
            .||||||||.||.||..||||||||||..|.||.||.||.|||||.|||||||||||||||||.||||||||||
Sbjct  411  ACTCCTCATCCTATTCGTCCTCAGCACGATCGTCGTGGACTACATCGATGAAGGAAGGCTGGTACTTGAGTTCA  484

Query  515  GCCTCCTGTCTTATGCTTTTGGCAAATTTCCTACCGTTGTTTGGACCTGGTGGATCATGTTCCTGTCTACATTT  588
            ..||||||.|.|||||||||||||||||||||||.|||.|||||||.||||||..||||||||||||||||.|.
Sbjct  485  ATCTCCTGGCCTATGCTTTTGGCAAATTTCCTACTGTTATTTGGACATGGTGGGCCATGTTCCTGTCTACACTG  558

Query  589  TCAGTTCCCTATTTTCTGTTTCAAC-ATTGGGCCACTGGCTATAGCAAGAGTTCTCATCCGCTGATCCGTTCTC  661
            |||.|.||||||||.|||||.||.| ||.||.|||| ||.||.||||||||||||||.||..|||||..|||.|
Sbjct  559  TCAATCCCCTATTTCCTGTTCCAGCGATGGGCCCAC-GGTTACAGCAAGAGTTCTCACCCATTGATCTATTCCC  631

Query  662  TCTTCCATGGCTTTCTTTTCATGATCTTCCAGATTGGAGTTCTAGGTTTTGGACCAACATATGTTGTGTTAGCA  735
            |..||||||||||.||.|||.|..||||.||..||||||||||||||||||..||||||||.|||||.||||||
Sbjct  632  TTGTCCATGGCTTGCTCTTCTTAGTCTTTCAACTTGGAGTTCTAGGTTTTGTGCCAACATACGTTGTCTTAGCA  705

Query  736  TATACACTGCCACCAGCTTCCCGGTTCATCATTATATTCGAGCAGATTCGTTTTGTAATGAAGGCCCACTCATT  809
            ||.||||||||||||||.|||||||||||..|.|||.|.||.|||||||||||..||||||||||.||||||||
Sbjct  706  TACACACTGCCACCAGCCTCCCGGTTCATTCTGATACTGGAACAGATTCGTTTGATAATGAAGGCTCACTCATT  779

Query  810  TGTCAGAGAGAACGTGCCTCGGGTACTAAATTCAGCTAAGGAGAAATCAAGCACTGTTCCAATACCTACAGTCA  883
            ||||||||||||..|.||.||.|||||||||.||||.||||||||||||||||..|.||||.||||.|||||||
Sbjct  780  TGTCAGAGAGAATATCCCACGAGTACTAAATGCAGCCAAGGAGAAATCAAGCAAAGATCCACTACCCACAGTCA  853

Query  884  ACCAGTATTTGTACTTCTTATTTGCTCCTACCCTTATCTACCGTGACAGCTATCCCAGGAATCCCACTGTAAGA  957
            |||||||..||||||||.|.|||||.|||||.|||||.|||||.||||.|||.||.||||.|||.|||||||||
Sbjct  854  ACCAGTACCTGTACTTCCTGTTTGCGCCTACACTTATTTACCGAGACAACTACCCAAGGACTCCTACTGTAAGA  927

Query  958  TGGGGTTATGTCGCTATGAAGTTTGCACAGGTCTTTGGTTGCTTTTTCTATGTGTACTACATCTTTGAAAGGCT  1031
            ||||||||||||||||||.|||||..||||||.|||||.|||.|.||.||||||||||||||||||||.||.||
Sbjct  928  TGGGGTTATGTCGCTATGCAGTTTTTACAGGTGTTTGGCTGCCTGTTTTATGTGTACTACATCTTTGAGAGACT  1001

Query 1032  TTGTGCCCCCTTGTTTCGGAATATCAAACAGGAGCCCTTCAGCGCTCGTGTTCTGGTCCTATGTGTATTTAACT  1105
            .||||||||..|.||.||||||||||||||||||||||||||.||||||||.||||||||.|||||.|||||||
Sbjct 1002  CTGTGCCCCACTATTCCGGAATATCAAACAGGAGCCCTTCAGTGCTCGTGTCCTGGTCCTGTGTGTGTTTAACT  1075

Query 1106  CCATCTTGCCAGGTGTGCTGATTCTCTTCCTTACTTTTTTTGCCTTTTTGCACTGCTGGCTCAATGCCTTTGCT  1179
            ||||||||||||||||..||||.||.||||||.|.||.||||||||||||||||||||||||||||||||||||
Sbjct 1076  CCATCTTGCCAGGTGTCTTGATACTGTTCCTTTCGTTCTTTGCCTTTTTGCACTGCTGGCTCAATGCCTTTGCT  1149

Query 1180  GAGATGTTACGCTTTGGTGACAGGATGTTCTATAAGGATTGGTGGAACTCCACGTCATACTCCAACTATTATAG  1253
            |||||||||||||||||||||||||||||.||||||||.|||||||||||.||.||||||||||||||.||.||
Sbjct 1150  GAGATGTTACGCTTTGGTGACAGGATGTTTTATAAGGACTGGTGGAACTCTACATCATACTCCAACTACTACAG  1223

Query 1254  AACCTGGAATGTGGTGGTCCATGACTGGCTATATTACTATGCTTACAAGGACTTTCTCTGGTTTTTCTCCAAGA  1327
            .||||||||.||||||||.||.||||||||.||.|||||||.||||||.|||.|.||||||||||||||.||||
Sbjct 1224  GACCTGGAACGTGGTGGTGCACGACTGGCTCTACTACTATGTTTACAAAGACCTGCTCTGGTTTTTCTCGAAGA  1297

Query 1328  GATTCAAATCTGCTGCCATGTTAGCTGTCTTTGCTGTATCTGCTGTAGTACACGAATATGCCTTGGCTGTTTGC  1401
            |.|||||||||||.||||||.|.||.|||||.||..|.||.|||||.||.|||||.||||||.|.||..|.|||
Sbjct 1298  GGTTCAAATCTGCCGCCATGCTGGCCGTCTTCGCCCTGTCGGCTGTGGTGCACGAGTATGCCCTCGCCATCTGC  1371

Query 1402  TTGAGCTTTTTCTATCCCGTGCTCTTCGTGCTCTTCATGTTCTTTGGAATGGCTTTCAACTTCATTGTCAATGA  1475
            .||||.|..|||||.||.||||||||||||||||||||||||||||||||||||||.|||||||||||.||.||
Sbjct 1372  CTGAGTTACTTCTACCCGGTGCTCTTCGTGCTCTTCATGTTCTTTGGAATGGCTTTTAACTTCATTGTTAACGA  1445

Query 1476  TAGTCGGAAAAAGCCGATTTGGAATGTTCTGATGTGGACTTCTCTTTTCTTGGGCAATGGAGTCTTACTCTGCT  1549
            .||||||||||.|||.||.|||||..|..||.|.|||.|||||||.|||.|||||.|||||.||.|.||.||||
Sbjct 1446  CAGTCGGAAAAGGCCAATCTGGAACATCATGGTTTGGGCTTCTCTGTTCCTGGGCTATGGACTCATTCTGTGCT  1519

Query 1550  TTTATTCTCAAGAATGGTATGCACGTCAGCACTGTCCTCTGAAAAATCCCACATTTTTGGATTATGTCCGGCCA  1623
            |||||||||||||.||||||||.||.|||||||||||||||||.||.||.||||||.||||||||||||||||.
Sbjct 1520  TTTATTCTCAAGAGTGGTATGCCCGCCAGCACTGTCCTCTGAAGAACCCTACATTTCTGGATTATGTCCGGCCG  1593

Query 1624  CGTTCCTGGACTTGTCGTTACGTGTTT  1650
            ||..|||||||||||||.|||||||||
Sbjct 1594  CGGACCTGGACTTGTCGGTACGTGTTT  1620

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