Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_01718
Subject:
NR_028397.1
Aligned Length:
3379
Identities:
719
Gaps:
2594

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ACGTGAGAGGAGACTTCCGGCCACTGCGTTGTAGTCGGCCCGGCTGCAAAGCGTTTTTCTGCAGGCTGTTTTCC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CAGGTTCCCTCGGCCTGTACCTCGCGCACTCCTCTTGCTCCAGGTCCTTCAGTCTCCGCTCGTCTCACCGTAGG  148

Query    1  ----------ATGAGCAACAAAGAAGGATCAGGAGGGTTCAGGAAAAGGAAGCATGACAATTTCCCACATAACC  64
                      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CTGTGACGACATGAGCAACAAAGAAGGATCAGGAGGGTTCAGGAAAAGGAAGCATGACAATTTCCCACATAACC  222

Query   65  AAAGAAGAGAAGGGAAGGATGTTAATTCATCTTCACCCGTGATGTTGGCCTTTAAATCATTTCAGCAGGAACTT  138
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  AAAGAAGAGAAGGGAAGGATGTTAATTCATCTTCACCCGTGATGTTGGCCTTTAAATCATTTCAGCAGGAACTT  296

Query  139  GATGCAAGGCATGACAAATATGAGAGACTTGTGAAACTTAGTCGGGATATAACTGTTGAAAGTAAAAGGACAAT  212
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GATGCAAGGCATGACAAATATGAGAGACTTGTGAAACTTAGTCGGGATATAACTGTTGAAAGTAAAAGGACAAT  370

Query  213  TTTTCTCCTCCATAGGATTACAAGTGCTCCTGATATGGAAGATATATTGACTGAATCAGAAATTAAATTGGATG  286
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  TTTTCTCCTCCATAGGATTACAAGTGCTCCTGATATGGAAGATATATTGACTGAATCAGAAATTAAATTGGATG  444

Query  287  GTGTCAGACAAAAGATATTCCAGGTAGCCCAAGAGCTATCAGGGGAAGATATGCATCAGTTCCATCGAGCCATT  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GTGTCAGACAAAAGATATTCCAGGTAGCCCAAGAGCTATCAGGGGAAGATATGCATCAGTTCCATCGAGCCATT  518

Query  361  ACTACAGGACTACAGGAATATGTGGAAGCTGTCTCTTTTCAACACTTCATCAAAACACGATCATTAATTAGTAT  434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  ACTACAGGACTACAGGAATATGTGGAAGCTGTCTCTTTTCAACACTTCATCAAAACACGATCATTAATTAGTAT  592

Query  435  GGATGAAATTAATAAACAATTGATATTTACGACTGAAGACAATGGGAAAGAAAATAAAACTCCCTCCTCTGATG  508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||
Sbjct  593  GGATGAAATTAATAAACAATTGATATTTACGACTGAAGACAATGGGAAAGAAAATAAAAC------------TG  654

Query  509  CA--CAGGATAAGCAGTTTGGTACTTGGAGACTGAGAGTCACACCTGTCGATTACCTTCTGGGA----GTGGCT  576
            ||  |.||||           |.|||    ||         ||||||..|..|.|.|||  |||    |.||||
Sbjct  655  CAGCCGGGAT-----------TGCTT----AC---------CACCTGCAGCGTGCTTTC--GGAGGCGGCGGCT  702

Query  577  GACTTAACTGGAGAATTGATGCGG------ATGTGTA--TTAACAGTG--TGGGGAATGGGGACATTGATACCC  640
            |.|   || ||||       ||.|      |||.|.|  |..||||.|  ||||  ||.|||   ||       
Sbjct  703  GGC---AC-GGAG-------GCCGGGCTACATGAGAAGCTCGACAGGGCCTGGG--ATCGGG---TT-------  753

Query  641  CCTTT-----GAAGTGAGC-CAGTTTTTACGTCAGGTT--TATGATGGGTTTTCATTCATTGG----------C  696
            |||||     |.||||.|| ||.|.|     ||.||||  .|.||.||||.|       .|||          |
Sbjct  754  CCTTTCCCCAGCAGTGGGCACACTGT-----TCCGGTTCCCAGGAGGGGTGT-------CTGGCGAGGAGTCCC  815

Query  697  AACACT-GGA---------------------CCTT---ACGAG----------------------GTTTCTAAG  723
            |.|||| |||                     ||||   .||||                      |||||.|||
Sbjct  816  ACCACTCGGAGTCCAGGGCCAGACAGTGTGGCCTTGACTCGAGAGGCCTCTTGGTCCGGAGCCCTGTTTCCAAG  889

Query  724  A----AG---------CTGTATACCT---TGAAA----------CAAAGTTTGG---------CCAAAGTGG--  760
            |    ||         |||| .||||   |||.|          |..|.|||||         |..|.||||  
Sbjct  890  AGTGCAGCAGCCCCTACTGT-GACCTCTGTGAGAGGAACCTCGGCGCACTTTGGGATTCAGCTCAGAGGTGGCA  962

Query  761  --AGAATGCTTG------TTA-----------TGCCTTGAAAGT-CAGAGGGTCAGAAATTCCAAAACATATGT  814
              |||.|||.||      |||           .|||.||..||| |.|.|.|.|||      |||.|     ||
Sbjct  963  CCAGATTGCCTGACAGGCTTAGCTGGCCGTGTGGCCCTGGGAGTGCTGGGTGGCAG------CAAGA-----GT  1025

Query  815  TGGCAG--ATG---TGTTTT--------------CAGTT------AAAACAGAAATGATAGATCAAGAAG----  859
            |.||||  |||   .|||.|              |||.|      .|..|.|.|..|||.||.||||..|    
Sbjct 1026  TTGCAGCCATGGATAGTTCTGAGACCCTGGACGCCAGCTGGGAGGCAGCCTGCAGCGATGGAGCAAGGCGTGTC  1099

Query  860  AGGGCA------TTTCT---------------------------------------------------------  870
            .|||||      |.|||                                                         
Sbjct 1100  CGGGCAGCAGGCTCTCTGCCATCAGCAGAGTTGAGTAGCAACAGCTGCAGCCCTGGCTGTGGCCCTGAGGTCCC  1173

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 1174  CCCAACCCCTCCTGGCTCTCACAGTGCCTTTACCTCAAGCTTTAGCTTTATTCGGCTCTCGCTTGGCTCTGCCG  1247

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 1248  GGGAACGTGGAGAAGCAGAAGGCTGCCCACCATCCAGAGAGGCTGAGTCCCATTGCCAGAGCCCCCAGGAGATG  1321

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 1322  GGAGCCAAAGCTGCCAGCTTGGACGGGCCTCACGAGGACCCGCGATGTCTCTCTCGGCCCTTCAGTCTCTTGGC  1395

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 1396  TACACGGGTCTCTGCAGACTTGGCCCAGGCCGCAAGGAACAGCTCCAGGCCAGAGCGTGACATGCATTCTTTAC  1469

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 1470  CAGACATGGACCCTGGCTCCTCCAGTTCTCTGGATCCCTCACTGGCTGGCTGTGGTGGTGATGGGAGCAGCGGC  1543

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 1544  TCAGGGGATGCCCACTCTTGGGACACCCTGCTCAGGAAATGGGAGCCAGTGCTGCGGGACTGCCTGCTGAGAAA  1617

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 1618  CCGGAGGCAGATGGAGGTAATATCCTTAAGATTAAAACTTCAGAAACTTCAGGAAGATGCAGTTGAGAATGATG  1691

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 1692  ATTATGATAAAGCTGAGACGTTACAACAAAGATTAGAAGACCTGGAACAAGAGAAAATCAGCCTGCACTTTCAA  1765

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 1766  CTTCCTTCAAGGCAGCCAGCTCTTAGCAGTTTCCTGGGTCACCTGGCAGCACAAGTCCAGGCTGCCTTGCGCCG  1839

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 1840  TGGGGCCACTCAGCAGGCCAGCGGAGATGACACCCACACCCCACTGAGAATGGAGCCGAGGCTGTTGGAACCCA  1913

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 1914  CTGCTCAGGACAGCTTGCACGTGTCCATCACGAGACGAGACTGGCTTCTTCAGGAAAAGCAGCAGCTACAGAAA  1987

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 1988  GAAATCGAAGCTCTCCAAGCAAGGATGTTTGTGCTGGAAGCCAAAGATCAACAGCTGAGAAGGGAAATAGAGGA  2061

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2062  GCAAGAGCAGCAACTCCAGTGGCAGGGCTGCGACCTGACCCCACTGGTGGGCCAGCTGTCCCTGGGTCAGCTGC  2135

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2136  AGGAGGTCAGCAAGGCCTTGCAGGACACCCTGGCCTCAGCCGGTCAGATTCCCTTCCATGCAGAGCCACCGGAA  2209

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2210  ACCATAAGGAGCCTCCAGGAAAGAATAAAATCCCTCAACTTGTCACTTAAAGAAATCACTACTAAGGTGTGTAT  2283

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2284  GAGTGAGAAATTCTGCAGCACCCTGAGGAAGAAAGTTAACGATATTGAAACCCAACTACCAGCCTTGCTTGAAG  2357

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2358  CCAAAATGCATGCCATATCAGGAAACCATTTCTGGACGGCTAAAGACCTCACCGAGGAGATTAGATCATTAACA  2431

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2432  TCAGAGAGAGAAGGGCTGGAGGGACTCCTCAGCAAGCTGTTGGTGTTGAGTTCCAGGAATGTCAAAAAGCTGGG  2505

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2506  AAGTGTTAAAGAAGATTACAACAGACTGAGAAGAGAAGTGGAGCACCAGGAGACTGCCTATGGTAGGTAGTGCA  2579

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2580  CAACTGTTCCCCGGCAAGATATTGATGATATTTGTTGTGTTTTGTGGCCAGGCAGAATGTTCTGTGCCTTATGT  2653

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2654  GAACGTCACTGTGAAGAGCGTCATGGAGCACATGGCCCTTTTCCTTGGGGACATTTTTGGCAGGTGCCTTGGCA  2727

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2728  AACCGAATGGAATTACTTGTCAGCTTTTGTTTTCATATTCACATGTGACATCTTTTCTTTTTCTGTTCCCTGTC  2801

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2802  TCAACCTGTGTTTGCTAATAGCCTTGTTATTATTTAGAGCAGTCTCTCCCTTGGCAAGGTCTTGAGCATTTTCT  2875

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2876  TTGTGTGACAATTATCTTCCTTTTGTCCCTTGGCTCCGTCTCCTTGTCTGCACAATCATAGACTAAATCAGGCT  2949

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 2950  GATCTGAGAAAATTGAGGGAAGACCATAAAGTGGCTCTTCTATGTGTGGACTTTTCTGAGAGCTTCTTTCCCCA  3023

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 3024  GGAAGGATGATGTAGAAGATGTGAATGCCGCCTTAGCCAAAGTGTCTGCTTGTCAGAGGAGTTCAAGTGTTCCT  3097

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 3098  GTGTTCTTTCCTTTTCCAGTCGTTAGGAGTAACTGAGCTTACTCTGAGATTTGCACCCAGAGGGATGGTCTCAG  3171

Query  871  --------------------------------------------------------------------------  870
                                                                                      
Sbjct 3172  AAGACGCTGGTTCAGTGCAAATTGAGATGGTAAAAACTTATTTCTTAAAAAATGGTTCCTAAATAAATGTCATT  3245

Query  871  -------------------------------------------------  870
                                                             
Sbjct 3246  TACTAAAACAAATGAAAGAAATATATATATGAATAAATGGCTATATTTT  3294

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