Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_01741
- Subject:
- XR_002956669.1
- Aligned Length:
- 5558
- Identities:
- 415
- Gaps:
- 5121
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AACTCTTGGCCTCAAGTGATTCTCCAGCCTTGGCCTCCTAAGGTACTAGGAGGCATGAGCCACCACAACTGGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AATAGAGATCTTTTTGTTCTCCAATTTTGCCATGCTAATTAATAGAGATACTAGGTGTGGTGGACTAAATGGTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 ACCAAAAAGACATGGCCTAATCCCCAGAACCCATTACTATTCCCATATATAGTAACAGACTGAATATTACCTTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TAGGGCAAAATATGTAGTTAAGAATTTTAAGGGCCAGCATGGTGGCTCATGCCTGTAATCCCAGCATTTTGGGA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GGTAGAGGTGGGTGAATCACCTGAGGTCAGGAGTTCAAGCCCAGCCTGGCCAACATGGCGAAACCCCATCTCTA 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CTAAATATACAAAAATTAGCCAGGTGTGGTGGCCTGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGTAGCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 TGAACCCAGGAGGCAGAGGTTGCAGTGAGCCAAAATTGTGCCACTGCACTCCAGCCTGGGCAACAGAGCGAGAC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TCCATCTCAAAAAAAAAAAATTGAGAGGAGTGTTATCCTAGATTTTCCAGGTGAGCTCTAAATCCAGTAACAAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGTCTGTACAAGAATGAGGCAAAGAAAGATAACACAGATAGGAGGAAGCAATGCCACCATGACGACACAGACTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GAATGACACCGTTAACAGCTGAGGATGCCAAGAACCACCAGAAACTGGACGAGGCAAAAACAGATTCTCCTCTA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GAGCCTCTAGAGAGAGTATAGCCCTGCTGACACCTTGATTTTCTTCTGACCTCCAGCACTGTGAAAGAATAAAC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTCTGTTGTTTAAGCCACCCAGTTTACAGTAATTTGTTGTAGCAGTCATATTTTAAGAAGAAAACTGGGGGAAT 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 AAATTTGGTGTAAGGAAATGTTATAGGAAATCTAGGTCCACCTGCCTGGTTATGGTGACAAAGGGTGAATACTT 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TCCTAAGTTAGCAACATCAGAAACATCTTTAAAGTCTTTTTCTACATGAATTTCCTTATTGGTTGCAGTGATTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TAAAATATGTCCACAAATTATTTAATTATACCCCCTCCAAAAGTTGGAGCCTAATTCTCCTCCCTTTGAGTATG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 GATTATATTTATTGGCTTACTTCTAACAATACAATGTGGCAGAAGTGACCGTTTGTGACTTCCAAAATTAGGAC 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ATAAAAGACTTTGTGGCTTTCTCCTTGTTCTTTGACTTAGATTATTCGCTCTGGGAGAAGCCAGCTGTTGTGTC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ATAAGGATACTCAAGCTGCACTATGCAATGTCCACATGGCAAAAACTCAGTCCTCTTGCCAACAGGAAACCCAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GAACTTGGGCTATCTGAGCACAGTCAGCCTTAAAATGACTGTAGTTCGGGGCCGGCCTTCAAGCGTCAGCAACG 1406
Query 1 ----ATGGCAGCCACCACGGGCTCGGGAGTAAAAGTCCCTCGCAATTTCCGACTGTTGGAAGAACTCGAAGAAG 70
|.|||||||||||.|||||||||||||||||||||||.|||||||.|||||||||||||||||..|||||
Sbjct 1407 CAAGACGGCAGCCACCATGGGCTCGGGAGTAAAAGTCCCTCACAATTTCTGACTGTTGGAAGAACTCAGAGAAG 1480
Query 71 GCCAGAAAGGAGTAGGAGATGGCACAGTTAGCTGGGGTCTAGAAGATGACGAAGACATGACACTTACAAGATGG 144
||||||||||||||||||||||||||||||||||.||||||||||||||.||||||||||| |.|||||||
Sbjct 1481 GCCAGAAAGGAGTAGGAGATGGCACAGTTAGCTGAGGTCTAGAAGATGATGAAGACATGAC----AAAAGATGG 1550
Query 145 ACAGGGATGATAATTGGGCCTCCAAGAACAATTTATGAAAACCGAATATACAGCCTTAAAATAGAATGTGGACC 218
|||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 1551 ACAGGGATGATAATTGGGCCTCCAAGAACAATTTATGAAAACCAAATATACAGCCTTAAAATAGAATGTGGACC 1624
Query 219 TAAATACCCAGAAGCACCCCCCTTTGTAAGATTTGTAACAAAAATTAATATGAATGGAGTAAATAGTTCTAATG 292
||||||||||..|||||||||||||||||||||||||||||||||||||.|.||||||||.|||||||||||||
Sbjct 1625 TAAATACCCACTAGCACCCCCCTTTGTAAGATTTGTAACAAAAATTAATGTAAATGGAGTTAATAGTTCTAATG 1698
Query 293 GAGTGGTGGACCCAAGAGCCATATCAGTGCTAGCAAAATGGCAGAATTCATATAGCATCAAAGTTGTCCTGCAA 366
||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1699 GAGTAGTGGACCCAAGAGCCATATCAGTGCTAGCAAAATGGCAGAATTCATATAGCATCAAAGTTGTCCTGCAA 1772
Query 367 GAGCTTCGGCGCCTAATGATGTCTAAAGAAAATATGAAACTCCCTCAGCCGCCCGAAGGACAGTGTTACAGCAA 440
|||||||.|.|||||.||||||||||||||||||||||||||||||||||.||.|.||||||||||||||||||
Sbjct 1773 GAGCTTCAGTGCCTATTGATGTCTAAAGAAAATATGAAACTCCCTCAGCCACCGGCAGGACAGTGTTACAGCAA 1846
Query 441 T------------------------------------------------------------------------- 441
|
Sbjct 1847 TTAATCAAAAAGAAAAACCACAGGCCCTTCCGCTTCCCCCCGCCCGATTCGATTTAAGCAGTCTTCGTTTTCCA 1920
Query 442 -------------------------------------------------------------------------- 441
Sbjct 1921 CAGTAGTAAATTTTCTAGATACATCATGTAGACCTCAAAGTACTGGAAAGGAAGCTCCAATTCAAAGGAAATTT 1994
Query 442 -------------------------------------------------------------------------- 441
Sbjct 1995 ATCTTAAGATACTGTAAATGATACTAATTATCCATTTGAAATATATAAGTTTTGCTATAACAAATCATCCTATC 2068
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2069 AAGTGTAACCACTGTCCACGTAGTTGAACTTCTGGAATCGAGAAATTCTAATTAAATTGATTCCCATCATAACT 2142
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2143 AGTGGGGCATATCTAACTCAACTGTGAAAAGAAACATCACACAATCACCTTGCTGATTACATGGCCTGGGGGTC 2216
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2217 TCTGCCTTCTCCCCTTACCCTCCTGCCTCCCACCCTCCCTGCAACAGCCCTCTAGCTTGGCTTGTTAGAGTGGA 2290
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2291 TGTGAAGGTTTCAGGTTGCAGCCTGTGGGACTACTGCTAGGTGTGTGGGGTGCTTCACCTGCACCCCTGGTTTC 2364
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2365 TTTAAGTCTTATGCACCTTCCAATCCGTCATCCTGTCCCCACACTCCTCCACTCCTGCCTTTGGCAGAAGCATA 2438
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2439 GGTTGTAACCCCTCCGCTCCCCTCTAAGATTGGCCTTTGGTAAGGAATTCAGGGCTTTCCCAGTATCTTCTCTC 2512
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2513 CCCCACCTTTATCGAGGGATGCTGTTTTTTCTTCCCTCCTCAAGTTGCTTTCTGCACCATCACCACTCAATACC 2586
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2587 TTCCATGACACTTCCTTGCTTTGGGCAGAAGCCATCAGGTAAGGTTAGAAAGTCTCTAACCTCCCTTGTTTAGT 2660
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2661 TTTGGAACCATACTTATTCATTCTCCATCAGCCTGGGAAATGAATATTGGGTTTTCAGCCCTGCCACCCTCTGC 2734
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2735 TGTCGTCAGCTGATGCGTTGTTTTTAGCTCAGGTTTTGATAAGGTGAAAAGGAAAGTCACCAGGGTTACTCAGA 2808
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2809 CCTGCCAGCTCTCGGAGTCCTTGGTGGTTGAAATTGGAGAAAGACCACAAGAAGACACTTGTAAGCACACGTGA 2882
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2883 TCCCTCTGAATTGTTTTACTTCCTGTAATTGCTTTTGCTTTTAAAAACTGAAGAAGTTTTAAACAGGGCTTTCA 2956
Query 442 -------------------------------------------------------------------------- 441
Sbjct 2957 TTTGGTCATCCTTGCAATCCATTGAGGTCTAGTTTGGAATCTGACAACTGGAACAAAAAGAACCTTGAATCCAG 3030
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3031 TGCGTGCCTTGGTTTTGGTGCTGCTGCTGCTTCTCAAGATCCTCAGCAGGGATTAAGAAAGAACCCAGTGTGCA 3104
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3105 TAGCAGATCCCTGAAATTGGCGGGCTTGACCTCCTGGGAAATTGGTGCGTCTTTCCACTTTCTGTTCAGGACCA 3178
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3179 TTAAATGCTGAAATGTGGATGCATACCGAAATAAAAGTAATTCATTGTGTAAAAAAATAAAATAACTCTAGTTC 3252
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3253 AGGATGACATCTTGACTGCAACCTCATGAGAGACCCTGAGCCAGAACCCCCTAGGTAAGCTGCTCTTAAATTCC 3326
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3327 TGAACCACAGCAGAAATTATGAGATAATATTTAGTGCTTTAATCTACCAGATTTTGAGGTAATTCCCCCCCTTT 3400
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3401 TTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTTTTGTTCTTCTCACCCAGGCTGGAATGCAATGGCGTGATCTC 3474
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3475 AGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAG 3548
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3549 GTCCCCACCACCATGCTCAGCTAATTTTTATATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGT 3622
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3623 CTCGAACTCCTGAGCTCAGGTAATCCATCTGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCG 3696
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3697 CACCTGTCCTTGAGGTAATTCTTAACACAAATAACTAATACACTGATGCACCTTCTAAATAAAGTGCCATTTTT 3770
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3771 GTTCAGGAGGCCTTAGCATAACAAATATCACAATCCTATGAATCTCTAGAAGTTGTCATGTACTAGATGATTAC 3844
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3845 TGACATCAACACAAGTTATAATACCTTAAGAATGATACCATTCATTCAGTACTTCATATGTATATGAATTTTAC 3918
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3919 CAGCACAGAAACTTAGCCTAGGAATCTGTCTAGTTCTCCTATTATTAACATCATACATGAGTATGGTACATTTG 3992
Query 442 -------------------------------------------------------------------------- 441
Sbjct 3993 TAATGATCAATGAGCAAATATCAATCCATTATTACTAACTAAATTCATACTTTATTCAAATTTCCTTACTTTCT 4066
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4067 CTTTATTCTCTAAAGTTCTGTGAATCCATGGTCCTATATCTGCACTAATTCACTTGTGTTTTTTCTATATACTT 4140
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4141 CTGCATCTAAAATACTATTTTTACTAGATTTTTTACCAGACTAATTTCATTGAATGTCTTCCAAAGTATGAACA 4214
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4215 CTTTTATTTTAAAGTTTTCTTAATATCCTCATGGTAACATCAAAATTTAAGGAAATCTGCTTGTCATCAAAAAG 4288
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4289 GGTTTTGGTAATGCTTTGTTAGATTTGCAAACTTTTCATATTATTTGCTCTTACATCACTTCCATGCTATTTCC 4362
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4363 TTTGCTTTTAGTGTATTAATTTTGTTCAAAATGGTAAAATAAAAGAAATATTTATACATTATATTTTTAAGTAT 4436
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4437 CTATTTCCTTAATCTAAGGTAAACTTTTCTCAAGGCATTTTAACTTAACAGGATATTACATAGAAAAAAATAGG 4510
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4511 GGAATAATATCTGACACACTTCAAATGTTCTTTGAACTTTGTTAGTTTAGTGTCAGTTATTGACTGCTTGAATT 4584
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4585 GGAGAACCCCCTGCTCATATCAGTAACAGCTAGTCAAAATTATCAAGAACATTAAGAACACATCACAGAAATCA 4658
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4659 CTGTCATCAGTTATAGATAGAAAGGAAGATTGCACAGTGAGATGATGTATTCAATAGAAGGTTGTGTGTAGTAA 4732
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4733 AAATAAGAATTGTAAATGTAAGTCAACAGTAAATCCAAAAGCCATGTCTTTCCAGGGAAATCTAAAAACTATGT 4806
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4807 TTCCTACTTTCAAAATCCTTTCATCATTACAAGAGTTATTCTTTTCTGGTTCAAAAATCTTGCCTACCTCCTTT 4880
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4881 TAAAAGTTATTCTTTAAAACATTAGGCCAGATGAGCTAATTTCAGACAGCTTATTTACCTGCTCATGGATTTAT 4954
Query 442 -------------------------------------------------------------------------- 441
Sbjct 4955 ATGCCACCTGCTTTTGCTTTTTCTACAGATGCAAAGTCAACCTCTGGGGCAAAATTCCACCTTTCTCTTTCTGC 5028
Query 442 -------------------------------------------------------------------------- 441
Sbjct 5029 CACACAAGTGGTAAATAACATGACCCAATAAATTTTAGCATTTCCCCAAATGTGTAGGATACAAAAAATGTATT 5102
Query 442 -------------------------------------------------------------------------- 441
Sbjct 5103 CATTCATGTGAGATATAAAAATGTACACTCACACTTCTGAAATCAACAGCCAGCCATTTCACACTTGGGCCAAA 5176
Query 442 -------------------------------------------------------------------------- 441
Sbjct 5177 GGCAAACAAACATAATTCTCACTGGCAGCTGGACAACATTCCGAGCTGCCACCACATTAATTAACTCACCTCAA 5250
Query 442 -------------------------------------------------------------------------- 441
Sbjct 5251 TCAGATTCCACTTCAACTTGCACAGCTTGCTGCCAAGAAGCCTAGCAATAAATTGTTAGGTTAAATACTGAACA 5324
Query 442 -------------------------------------------------------------------------- 441
Sbjct 5325 AGGTAGGGAAATACCATATGGTATGTTGTTATAGAGGCTGGGATATTCTTGTTTAACACTAGTAGCAGGGTTTT 5398
Query 442 -------------------------------------------------------------------------- 441
Sbjct 5399 CCATTTACTTTTTATTGTCTCTTGTGATTTGAGAAAAATGAGTATATGCTCTTGTTGATAAATGAACTTGCATG 5472
Query 442 -------------------------------------------------------------------------- 441
Sbjct 5473 TCTTATTGTGAAGGGGAATGGGATGGTAACAAGTTAACAAAACACCTTTGTCCACAAGCTTCTATAGTTGATAT 5546
Query 442 -------- 441
Sbjct 5547 TCCCTAAA 5554
