Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02158
Subject:
XR_001746421.1
Aligned Length:
2937
Identities:
1241
Gaps:
1620

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGTCCTTTCATTCCCGCTCCTACCGAGATGCCGGGAAAGCACTCCCGCGCCGATGCGAGGTGATACTCTCTGGA  74

Query    1  ------------------------------ATGATACTCCTGGTAAACCTCTTTGTGCTGCTCTCTGTGGTTTG  44
                                          ||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  ATCATAGGATTAACAACTTGGAAAAGGCCTATGATACTCCTGGTAAACCTCTTTGTGCTGCTCTCTGTGGTTTG  148

Query   45  TGTCCTCTTAAATCTAGCTGGATTTATCCTAGGCTGCCAAGGGGCCCAGTTTGTGTCCAGCGTGCCCAGGTGTG  118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TGTCCTCTTAAATCTAGCTGGATTTATCCTAGGCTGCCAAGGGGCCCAGTTTGTGTCCAGCGTGCCCAGGTGTG  222

Query  119  ATCTGGTGGACTTAGGTGAAGGCAAGATTTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAGTGCACAGACAAA  192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  ATCTGGTGGACTTAGGTGAAGGCAAGATTTGCTTCTGTTGTGAAGAATTTCAACCAGCCAAGTGCACAGACAAA  296

Query  193  GAAAATGCCTTGAAACTCTTTCCGGTTCAGCCCTGTAGTGCTGTTCACCTTCTACTTAAGAAAGTCCTCTTTGC  266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GAAAATGCCTTGAAACTCTTTCCGGTTCAGCCCTGTAGTGCTGTTCACCTTCTACTTAAGAAAGTCCTCTTTGC  370

Query  267  CCTGTGTGCCTTGAATGCCCTGACCACCACCGTCTGCTTGGTGGCCGCTGCCCTCCGCTACCTCCAGATATTCG  340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CCTGTGTGCCTTGAATGCCCTGACCACCACCGTCTGCTTGGTGGCCGCTGCCCTCCGCTACCTCCAGATATTCG  444

Query  341  CAACCAGGAGATCCTGCATCGATGAATCCCAGATTTCTGCTGAAGAAGCGGAGGATCATGGACGCATCCCCGAC  414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CAACCAGGAGATCCTGCATCGATGAATCCCAGATTTCTGCTGAAGAAGCGGAGGATCATGGACGCATCCCCGAC  518

Query  415  CCTGATGATTTTGTGCCGCCTGTGCCTCCCCCTTCCTATTTTGCCACGTTTTACTCGTGCACACCCCGGATGAA  488
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CCTGATGATTTTGTGCCGCCTGTGCCTCCCCCTTCCTATTTTGCCACGTTTTACTCGTGCACACCCCGGATGAA  592

Query  489  CCGCAGGATGGTTGGTCCTGATGTTATTCCCCTGCCACACATCTACGGAGCTCGAATCAAAGGTGTGGAAGTGT  562
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CCGCAGGATGGTTGGTCCTGATGTTATTCCCCTGCCACACATCTACGGAGCTCGAATCAAAGGTGTGGAAGTGT  666

Query  563  TCTGTCCTCTGGATCCCCCGCCGCCATATGAAGCTGTGGTGAGCCAGATGGACCAGGAGCAGGGATCTTCATTC  636
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TCTGTCCTCTGGATCCCCCGCCGCCATATGAAGCTGTGGTGAGCCAGATGGACCAGGAGCAGGGATCTTCATTC  740

Query  637  CAAATGTCAGAAGGATCAGAAGCTGCTGTGATCCCATTGGATCTGGGCTGCACACAAGTGACTCAAGATGGGGA  710
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CAAATGTCAGAAGGATCAGAAGCTGCTGTGATCCCATTGGATCTGGGCTGCACACAAGTGACTCAAGATGGGGA  814

Query  711  CATTCCTAACATACCTGCCGAAGAAAATGCATCCACCTCAACTCCCAGTTCAACCCTGGTGCGTCCTATCAGAA  784
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  CATTCCTAACATACCTGCCGAAGAAAATGCATCCACCTCAACTCCCAGTTCAACCCTGGTGCGTCCTATCAGAA  888

Query  785  GCCGGAGAGCCCTCCCACCCTTGAGGACCAGGTCGAAGAGTGACCCTGTGCTCCATCCTTCTGAGGAGAGAGCT  858
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct  889  GCCGGAGAGCCCTCCCACCCTTGAGGACCAGGTCGAAGAGTGACCCTGTGCTCCATCCTTCTGAGGAGAGAGGT  962

Query  859  G--------CCCCAGTGCTC-------AGCTGTGAAGC-----TGCAACACAGACTGAAAGGAGAC--------  904
            |        ||||| .||||       .|||||| .||     |||        || |||||||.|        
Sbjct  963  GATGTCATTCCCCA-AGCTCTTCGCAGGGCTGTG-TGCTTATTTGC--------CT-AAAGGAGCCAGGTGAAG  1025

Query  905  -----TGGATCTGG-------------CTGCAGT-------GAC-TCTG-AGGAGAGGCT--TGAGATCTAGAG  949
                 |||.|||||             |||||||       |.| |.|| ||||   |||  ||||.|||.|.|
Sbjct 1026  GCAGGTGGCTCTGGCCAGCTCAGGACCCTGCAGTTTAAGTGGTCATTTGAAGGA---GCTTATGAGGTCTTGGG  1096

Query  950  -------------CTTCG-CGATG-CAG------------ACCGCGGTCTTTGATAGAT--TA-----------  983
                         ||.|| |.||| .||            ||| ..||||||.|..|||  ||           
Sbjct 1097  AAAGTAAAATATTCTACGTCCATGTTAGGAATATATATCTACC-ATGTCTTTTAAGGATGGTAGGGTTTTTTTG  1169

Query  984  -----------------------CAAA-------------------------------TCCTAC----------  993
                                   ||||                               |.||||          
Sbjct 1170  TTTTTTTTTAAAGTCATTGTCATCAAAAGAATTTGGTTGTACATGATACTATGCTAGGTACTACATGAAGACAA  1243

Query  994  --ATGGACACCAAGCTGCTGGTGGCGAGGT-------TCCT---GGA----GCAGT------------------  1033
              |||.|||||.|| |.|||.|..|.||.|       ||||   |||    |||.|                  
Sbjct 1244  TTATGCACACCTAG-TTCTGATTTCTAGATGCTGCAATCCTATAGGAATATGCATTGTCTTAAAAAAAGTCAAA  1316

Query 1034  -----------------CCTCTTGTACCA---------------------------------------------  1045
                             ||||||.||..|                                             
Sbjct 1317  AGGATTTTTGTATACTCCCTCTTTTATAATTTGTTATATTTTTACTATGTATGAGTAGATGATTGAATTATTGA  1390

Query 1046  ----TGAC--------------------------------------CCCAGACATCCATGAAC-----------  1066
                ||||                                      ||||.|||   ||..||           
Sbjct 1391  AATCTGACCTTGTTTTTAGAACTTTGGATAGAATGAAGTACACGCACCCACACA---ATTCACCTCTCTCTCTG  1461

Query 1067  --TTG--------TAGA----------------AAACATTAAA--------TCTG---TTTTGAAATCTG----  1099
              |||        ||||                |||.||||||        .|||   ||||    ||||    
Sbjct 1462  TGTTGTTTGTGTATAGATGTTACCTGAATAATTAAAAATTAAAATAATAACACTGACTTTTT----TCTGAATA  1531

Query 1100  -ATGA-----GGAGCA----------------CATGG-----------------------------AGGAAG--  1120
             ||||     .||.||                |||.|                             ||||||  
Sbjct 1532  TATGAATACCTGAACATCTCTAAATATCTCTTCATTGTAGAAAATTATAAAAAATAAAGAAACTAAAGGAAGAA  1605

Query 1121  -----------------------CCATCAC---------------AAGT------GC-CAGTT-----------  1138
                                   |||.|||               ||||      || .||||           
Sbjct 1606  AATTAAAATCTCCTGTAACTCCACCAGCACCAGCTTCTTCTTGTGAAGTAGTCTAGCAGAGTTGACCTCTGCTG  1679

Query 1139  TTCTAGAACA-------------------GATAAT---------------------GGCC----------CCAT  1162
            |||||.||||                   ||||||                     ||.|          ||.|
Sbjct 1680  TTCTAAAACACCTATGCAAATAAAACTTTGATAATCCTCCACCCTGCTCTCTCTAAGGTCCTGTCTTGAGCCCT  1753

Query 1163  TGCAG-CCCAG-------------------------------CACATC-CAGGGCCCACAAGCTGC--------  1195
            ||||| |.|||                               ||||.| |.||.|..||.|..|||        
Sbjct 1754  TGCAGTCTCAGTTCTGGCTCTCTGACAGTGTGTGTTATTTGCCACAGCTCTGGACTGACCATGTGCGAGCCAGA  1827

Query 1196  ---------CCTC----------------------GCGGAGA--------------------------------  1206
                     ||||                      |.|||||                                
Sbjct 1828  GAGAACATTCCTCTTGTCTCTACAGCAGCTTCTAAGTGGAGAGGAAGTCCTGCCGCCTGGTACTGAGCGTGTCT  1901

Query 1207  -------------------CAGCCTGGC---------------------------------CTGCTGCAC----  1224
                               |||||||||                                 ||.||.|||    
Sbjct 1902  CTGAAACACAGTGGCCAGGCAGCCTGGCTTCTGATTCCCAAGACCTGCCTTCACTGTGGGTCTCCTACACCCTA  1975

Query 1225  ----------------CTCCAG---------------AGCTG------CGGC-----GA---------------  1241
                            ||||||               |||||      |.||     ||               
Sbjct 1976  CCTGGCAAGTTGAGGACTCCAGCCTCAACGGGAACTTAGCTGTTTGCACAGCTTAGGGAAATCTTTCCAGAACC  2049

Query 1242  CCTTCACA-CCTTCACACCAGCGGGG---AG----GC-----CCCGAGCC-------GAGAGGAGGCCCC----  1291
            |||||.|| .||.||.|||.||||||   ||    ||     |..|||||       |.| |.||||.||    
Sbjct 2050  CCTTCTCATTCTGCAGACCTGCGGGGGCAAGAACAGCAGCTGCTGGAGCCCTCCATTGTG-GAAGGCGCCAGGT  2122

Query 1292  ------------GGCGAGTGGAG--GCTGAGC---GGCCACAC---AGCCTCATTGGGGTCATCCGAG------  1339
                        |..||||||||  .|||| |   |.||.|||   ||..||.||||       ||||      
Sbjct 2123  TGCCTTCAAGTGGAAGAGTGGAGACCCTGA-CTCTGTCCTCACACGAGTGTCTTTGG-------CGAGTGCTTC  2188

Query 1340  ----AGA------CTGTCCTG-----------------------------------------------------  1350
                |||      |||| |||                                                     
Sbjct 2189  TGGAAGACTCTTGCTGT-CTGTGACGTGCATATGGCTGCCTGAGAGGACAGTCTCGAATCCTGGTTTAGAGCTC  2261

Query 1351  --------------------------------------------------------------------------  1350
                                                                                      
Sbjct 2262  CCCACACCTGCCTTTCTCCAGAAGAAAGGGGGTGCTCCCCTTCTTCCACCTGCTCTCTCGCCCCCTGCTTCTTG  2335

Query 1351  --------------------------------------------------------------------------  1350
                                                                                      
Sbjct 2336  TCTTCTTTGAATTTCTAAATTGCTGCTTATCAGGCCTTCATAGACTGAAGATGCCAATGTTGTGTATGCTGAAG  2409

Query 1351  --------------------------------------------------------------------------  1350
                                                                                      
Sbjct 2410  GCTGCTGGCTGACTTCTGGACACATAATGACCAGATCTGAGTTTTGCTTCACACACTTCACAGTGCAGAAGCAT  2483

Query 1351  --------------------------------------------------------------------------  1350
                                                                                      
Sbjct 2484  TGCTGGTCTTTACACCCTTGCTGATATAGGCAGCCATGGAAATTAGAGCCTGCAGTGGATTTCCCAGGCTCTCT  2557

Query 1351  --------------------------------------------------------------------------  1350
                                                                                      
Sbjct 2558  GTTGACTTCCAGAATGATGTGTACTTTTTCTGCACCTAAATTTCTCTTTTGGTAATAGCTATAGATCTACCTCA  2631

Query 1351  --------------------------------------------------------------------------  1350
                                                                                      
Sbjct 2632  TATCCATGGTGTGAGCATCGATAACACAAGTCAGTACAACGTCCTTGAGGACGTTTGGGACAAAGCTGCCCCAG  2705

Query 1351  --------------------------------------------------------------------------  1350
                                                                                      
Sbjct 2706  TGCTCAGCTGTGAAGCTGCAACACAGACTGAAAGGAGACTGGATCTGGCTGCAGTGACTCTGAGGAGAGGCTTG  2779

Query 1351  --------------------------------------------------------------------------  1350
                                                                                      
Sbjct 2780  AGATCTAGAGCTTCGCGATGCAGACCGCGGTCTTTGATAGATTACAAATCCTACATGGACACCAAGCTGCTGGT  2853

Query 1351  ---------------------------------------------------  1350
                                                               
Sbjct 2854  GGCGAGGTTCCTGGAGCAGTCCTCTTGTACCATGACCCCAGACATCCATGA  2904

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