Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_02185
- Subject:
- XR_002958190.1
- Aligned Length:
- 4584
- Identities:
- 1234
- Gaps:
- 3325
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATTGCGGAAGTTTGGTGGGGAGGGTCGGAGCTCTGGTGGAGAGAGTGTTGTCTAAAACAAGTTCCGGAAGGGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCTGCCCTTCGCGGTCCGAGAACCACCGGCCTCCCCAGTTTGAGGGCTGTTACCCCGTGCGCGCTTCGACGTTG 148
Query 1 --------------------------------------------------------ATGTCATCCACTTCGCCC 18
||||||||||||||||||
Sbjct 149 CTGCTGTTGGCTCTCCTCGCCCCTCGTTCCCTTGGGAACCGCCTGGGAACTCCGCCATGTCATCCACTTCGCCC 222
Query 19 AACCTCCAGAAAGCGATAGATCTGGCTAGCAAAGCAGCGCAAGAAGACAAGGCTGGGAACTACGAAGAAGCCCT 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AACCTCCAGAAAGCGATAGATCTGGCTAGCAAAGCAGCGCAAGAAGACAAGGCTGGGAACTACGAAGAAGCCCT 296
Query 93 TCAGCTCTATCAGCATGCTGTGCAGTATTTTCTTCATGTCGTTAAATATGAAGCACAGGGTGATAAAGCCAAGC 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCAGCTCTATCAGCATGCTGTGCAGTATTTTCTTCATGTCGTTAAATATGAAGCACAGGGTGATAAAGCCAAGC 370
Query 167 AAAGTATCAGGGCAAAGTGTACAGAATATCTTGATAGAGCAGAAAAACTAAAGGAGTACCTGAAAAATAAAGAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AAAGTATCAGGGCAAAGTGTACAGAATATCTTGATAGAGCAGAAAAACTAAAGGAGTACCTGAAAAATAAAGAG 444
Query 241 AAAAAAGCACAGAAGCCAGTGAAAGAAGGACAGCCGAGTCCAGCAGATGAGAAGGGGAATGACAGTGATGGGGA 314
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AAAAAAGCACAGAAGCCAGTGAAAGAAGGACAGCCGAGTCCAGCAGATGAGAAGG------------------- 499
Query 315 AGGAGAATCTGATGATCCTGAAAAAAAGAAACTACAGAATCAACTTCAAGGTGCCATTGTTATAGAACGACCAA 388
|||||||||||||||||||||||||
Sbjct 500 -------------------------------------------------GGTGCCATTGTTATAGAACGACCAA 524
Query 389 ATGTGAAATGGAGTGACGTTGCTGGACTTGAAGGAGCCAAAGAAGCACTGAAAGAGGCTGTGATACTGCCTATT 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 ATGTGAAATGGAGTGACGTTGCTGGACTTGAAGGAGCCAAAGAAGCACTGAAAGAGGCTGTGATACTGCCTATT 598
Query 463 AAATTTCCTCATCTTTTTACAGGCAAGAGAACACCTTGGAGGGGAATCCTATTATTTGGGCCGCCTGGAACAGG 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AAATTTCCTCATCTTTTTACAGGCAAGAGAACACCTTGGAGGGGAATCCTATTATTTGGGCCGCCTGGAACAGG 672
Query 537 AAAGTCCTACTTAGCCAAAGCTGTAGCAACAGAAGCCAACAACTCAACATTTTTTTCAATATCTTCCTCTGATC 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 AAAGTCCTACTTAGCCAAAGCTGTAGCAACAGAAGCCAACAACTCAACATTTTTTTCAATATCTTCCTCTGATC 746
Query 611 TTGTTTCTAAGTGGCTAGGTGAAAGTGAAAAACTGGTTAAGAATTTATTCCAACTTGCCAGAGAGAACAAGCCC 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 TTGTTTCTAAGTGGCTAGGTGAAAGTGAAAAACTGGTTAAGAATTTATTCCAACTTGCCAGAGAGAACAAGCCC 820
Query 685 TCCATTATCTTCATTGATGAAATTGATTCTCTCTGTGGTTCAAGAAGTGAAAATGAAAGTGAAGCCGCACGTAG 758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 TCCATTATCTTCATTGATGAAATTGATTCTCTCTGTGGTTCAAGAAGTGAAAATGAAAGTGAAGCCGCACGTAG 894
Query 759 AATTAAGACGGAGTTCCTAGTGCAAATGCAAGGGGTTGGTGTAGACAATGATGGAATTTTGGTTCTGGGAGCTA 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 AATTAAGACGGAGTTCCTAGTGCAAATGCAAGGGGTTGGTGTAGACAATGATGGAATTTTGGTTCTGGGAGCTA 968
Query 833 CAAATATACCCTGGGTTCTGGATTCTGCCATTAGGCGAAGATTTGAGAAACGAATTTATATTCCCTTGCCGGAA 906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 CAAATATACCCTGGGTTCTGGATTCTGCCATTAGGCGAAGATTTGAGAAACGAATTTATATTCCCTTGCCGGAA 1042
Query 907 CCCCATGCCCGAGCAGCAATGTTTAAACTGCACCTAGGGACCACTCAGAACAGTCTCACGGAAGCAGACTTTCG 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 CCCCATGCCCGAGCAGCAATGTTTAAACTGCACCTAGGGACCACTCAGAACAGTCTCACGGAAGCAGACTTTCG 1116
Query 981 GGAACTTGGGAGGAAAACAGATGGTTATTCAGGGGCAGATATAAGTATCATTGTACGTGATGCCCTTATGCAGC 1054
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 GGAACTTGGGAGGAAAACAGATGGTTATTCAGGGGCAGATATAAGTATCATTGTACGTGATGCCCTTATGCAGC 1190
Query 1055 CTGTTAGGAAAGTACAGTCAGCTACTCATTTTAAAAAGGTTCGCGGACCTTCCCGAGCTGATCCTAACCATCTT 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1191 CTGTTAGGAAAGTACAGTCAGCTACTCATTTTAAAAAGGTTCGCGGACCTTCCCGAGCTGATCCTAACCATCTT 1264
Query 1129 GTAGATGATCTGCTAACACCTTGCTCTCCAGGTGACCCTGGTGCCATTGAAATGACATGGATGGATGTCCCTGG 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 GTAGATGATCTGCTAACACCTTGCTCTCCAGGTGACCCTGGTGCCATTGAAATGACATGGATGGATGTCCCTGG 1338
Query 1203 AGATAAACTTTTGGAGCCAGTTGTTTCCAT-GTCGGATATGTTG---------CGGTCACTATCT---AACA-- 1261
|||||||||||||||||||||||||||||| ||..||.||.||| ..|..|.|||.| ||||
Sbjct 1339 AGATAAACTTTTGGAGCCAGTTGTTTCCATGGTTTGAAATTTTGTTTGTTTTTAAGAAAATATTTTAAAACATT 1412
Query 1262 ------CAAAACCTACAGTCA--------------------------ATGAACA--------TGAC------TT 1289
||.||..|.||||.| ||.|||| |.|| ||
Sbjct 1413 ATACTTCATAATTTTCAGTTATATAAGATTTGCTGGAAAATCTTAGTATAAACAGGTGTATTTTACTTAATATT 1486
Query 1290 GTTGA--AATTAAA------GAAGTT-----TACAGAAGATTTTGGTCAAGAAGGC------------------ 1332
||||| .|||||| |||||| .||..||.||.| ||.|||.|
Sbjct 1487 GTTGACTCATTAAAAATTATGAAGTTAATTGAACTTAAAATAT-----AAAAAGTCATTATTTTTAAACTATTT 1555
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 1556 TCTTGGGTTTAGAGGAACCTTTAAGTGAAAAAGCTATTTTTTAAAGCACAAGATTCTGACTTTACAGGTCTTAT 1629
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 1630 AGCTAGAATATCTCCAAAATGCTCATATATAGTATAATTATTGTAAAGACCTAACTAAAAAATAGGGTTGGTGA 1703
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 1704 AATATTTTTTTTCCCCTGCATCTCAGATTTTTTAAAATAACCAGAAGTCACCTGTAATCCCAGCACTTTGGGAG 1777
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 1778 GCCAAGGCGGGCAGACCACTTGAGGCCAGGAGTTTGAAACTGGCCTGGCCAACATGGTGAAATGCCATCTCTCC 1851
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 1852 TAAAAATACAAAAATTAGCCAGGCAGTGTGGTGCACACCTGCAATCCAGCTACTCAGCTGAGGCAGGAGAATCA 1925
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 1926 CGTGAACCAGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCACAACCGCACCCCAGCCTGGGCAACAGAGCGAG 1999
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2000 ACTCTGTCTCCAAAAAAAAAACAAAAAATAGGGCCAGGTACGGTGGCTCATGCCTGTAATCCCAACACTTTGGG 2073
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2074 AGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCCAACACGGTGAAACCCCATCTCTAC 2147
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2148 TAAAAATACAAAAAGTTAGCCAGACGTGGTGGCACGTGCGTGTAGTCCCAGCTACTTGGGAGGCTGAGGCAGGA 2221
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2222 GAATAGCTTGAACCCAGGAGGCGGAGGTTGCAGTGAGCCGAGATCATACCACTGCACTCCAGCCTGGGCAACAG 2295
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2296 AGCGAGACTCTGTCTCAAAAAACAACAACAACAAAAACAAAAACCAGAAATACTAATGCTTGTATCATTGTTTT 2369
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2370 TATAGTGTTTTCTATTTCACTTCTCAAAGCTCCATAGAAAGTTTAAATATTGTAGTTCTATTTTTATTTTTAAA 2443
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2444 AATTACAGTTAATATAGTTTATATTGGAAGAATTAAAATAATCTACAAGACTTACTTTGCAAGGCATGTTATTT 2517
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2518 TTAGGGAACTTAGGGTGATTGAAAAGTTGTTTACTTACAGAAGAACATTCTCAGTTTTCAAAATTTTCTGTCAG 2591
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2592 TTTCAGATCTTCAAAGACCTTTAATGGCAGGTTTAATAGTAACTTCCAGAGGAGAAACTTTTACACGTCGGATA 2665
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2666 TGTTGCGGTCACTATCTAACACAAAACCTACAGTCAATGAACATGACTTGTTGAAATTAAAGAAGTTTACAGAA 2739
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2740 GATTTTGGTCAAGAAGGCTAAGCCAAAGACAAGGAAGATGCTTACCATATGTATTCTTTCTTTCATAGATATTT 2813
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2814 TTGTCTATTTGGATCGCATTAATTGTTTCCAGTAAAACTCTTTTACCACAGGGAAATACACATCTCACTTCAGA 2887
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2888 GTTCCATTAGGTTTTATATTGTACTTTTCCTCCATTACTTATTAAATACTCCTATTAACAAAAGGTACAAAATA 2961
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 2962 ACAGGTTATGAGGAAATGAGCGATATATGAACGGCATAAAAACAGAAATTACCCAGTAAAAAGGATGTCAGAAA 3035
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3036 TTGACATACAAATATTTACAATTTTTATGAATGGTGGTCTTTGCAAAGAGCATTTATATTTTCTTTTTTTTTTA 3109
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3110 CTAAAATGATATAGGGTTTATTTTATATTTTCAAAAAAATTGTTAAACATCATTCTTATCAATGTAAAATTTAC 3183
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3184 GTTATTAAAAAATTACAAATGATAGAATCTTTACTCAGGGATGGGCAATAAAACAGCAAAGAGCTTTGTGATTG 3257
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3258 GGTTTGAAAGATTTTGAATTATAGACAGTGCTCTTAATAGTTTTTAATAAGTTGATATTTTTTTCTGTGTAGAT 3331
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3332 TTAAATAATTTCTTTAAAAGCGTAAGCTTTGGCTGGGCATGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGA 3405
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3406 GGCTACGATGGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGTCTGGCCAACATGGTGAAATGCCGTCTCTA 3479
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3480 CTAAAAATACAAAAATTAGCTGGGCATGATGGCGAGTGTCTGTAATCCCAGCTACTCAGGAGGCTGAGGCGGGA 3553
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3554 GAATCACTTGAACCTGGGAGGCAGAGGTTGCAGTGAGCTGAGATCGCGCTACTGCATTCCAGCCTGGGCGCCGA 3627
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3628 GATAGCGCCATTGCACTCCAGCCTGGGCGACTGAATAAAACTCTGTCTCAAAAAAAAACAAAAACGGTAAGCTT 3701
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3702 TTATATTTAATTAACTGATACCTTTCACTGTGCAATCTCAAGAGGAAGATTTTCTAAATTAGACATTGTCTTTA 3775
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3776 CCTTAAAGAAGAAAATTGTCTATTTCAGTGTCTTTTTTAGCAAGATTGACCAAAACAGGTGGTAGGTGTGTAAT 3849
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3850 TTTTAACTGTCATGAAATACTGTAATGCGCACCTTTGCTAATAAGGAAATGGTCTCCCTTTGAATTATGGGAAG 3923
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3924 TTTCTTGTCTGTGATATGGGGTGTCTGTGTACATATATGTATATTTCCTTTTTTAATACAGGATAATAATATGG 3997
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 3998 GGTCTTGTCCTTCACCTTTTAAGTTCAGGGAACAGTTTGTCCTGACCACACATATGTTATCAGTGTAATGCTTT 4071
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 4072 ATGAAGCTTTAGAAATGAGCTCATGACTCATTAAAAAATAATAAACGATGCTATTTTAATATTTTCAAATAAAT 4145
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 4146 AATCTGAGGATGTGTTTCATACTTTAGCATCAACGCTGAGTTGTGCCTTGTAGAATTGCATTGTCTATACATGC 4219
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 4220 AAAAGACTATTAAGTTAGGATGAACTAGATTCCCTAATTACAGTGAAATTCTATCTTGCAAATGCTATAGAATA 4293
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 4294 ACTTGCATTTTAAAGTGTATTTGCACATTTTACATATGCTATGTGGTTGCCTTTGGGTTTTCTGTACAGATTGT 4367
Query 1333 -------------------------------------------------------------------------- 1332
Sbjct 4368 TTTTGTTATTAAATGGAAAAGGCCTGAATTATGCTCTTATGTGAAGTAAATTGATATAACCTATTGACTGTATT 4441
Query 1333 ---------------------------------------------------------------------- 1332
Sbjct 4442 CTGTGTATTATTCTTTATTTTGGGACCTTCTGTGTAAAAGAAAATATTACCTAAATTGGTTAGATACAAA 4511
