Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_02211
- Subject:
- XR_001746423.2
- Aligned Length:
- 3150
- Identities:
- 1362
- Gaps:
- 1788
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATTGGCATTGAGGAGGTAGGGAGCCAGCCCCTGGGCGCGGCCTGCAGGGTACCGGCAACCGCCCGGGTAAGCGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGGCAGGACAAGGCCGGAGCCTGTGTCCGCCCGGCAGCCGCCCGCAGCTGCAGAGAGTCCCGCTGCGTCTCCGC 148
Query 1 --------------------------------------------------ATGTGTGCCGCTCAGATGCCGCCC 24
||||||||||||||||||||||||
Sbjct 149 CGCGTGCGCCCTCCTCGACCAGCAGACCCGCGCTGCGCTCCGCCGCTGACATGTGTGCCGCTCAGATGCCGCCC 222
Query 25 CTGGCGCACATCTTCCGAGGGACGTTCGTCCACTCCACCTGGACCTGCCCCATGGAGGTGCTGCGGGATCACCT 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CTGGCGCACATCTTCCGAGGGACGTTCGTCCACTCCACCTGGACCTGCCCCATGGAGGTGCTGCGGGATCACCT 296
Query 99 CCTCGGCGTGAGCGACAGCGGCAAAATAGTGTTTTTAGAAGAAGCATCTCAACAGGAAAAACTGGCCAAAGAAT 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CCTCGGCGTGAGCGACAGCGGCAAAATAGTGTTTTTAGAAGAAGCATCTCAACAGGAAAAACTGGCCAAAGAAT 370
Query 173 GGTGCTTCAAGCCGTGTGAAATAAGAGAACTGAGCCACCATGAGTTCTTCATGCCTGGGCTGGTTGATACACAC 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGTGCTTCAAGCCGTGTGAAATAAGAGAACTGAGCCACCATGAGTTCTTCATGCCTGGGCTGGTTGATACACAC 444
Query 247 ATCCATGCCTCTCAGTATTCCTTTGCTGGAAGTAGCATAGACCTGCCACTCTTGGAGTGGCTGACCAAGTACAC 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ATCCATGCCTCTCAGTATTCCTTTGCTGGAAGTAGCATAGACCTGCCACTCTTGGAGTGGCTGACCAAGTACAC 518
Query 321 ATTTCCTGCAGAACACAGATTCCAGAACATCGACTTTGCAGAAGAAGTATATACCAGAGTTGT----------- 383
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ATTTCCTGCAGAACACAGATTCCAGAACATCGACTTTGCAGAAGAAGTATATACCAGAGTTGTCACACTTGAGC 592
Query 384 -------------------------------------------------------------------------- 383
Sbjct 593 TTCTGATGTCTGTACTAGTCAAGAAAACCCTGTTTTTTCACAAAGGAGGAAACATGGAATGTAAGCAACCTTCT 666
Query 384 -----------------------------CAGGAGAACACTAAAGAATGGAACAACCACAGCTTGTTACTTTGC 428
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CAAGGTCACGTAGCTAATAACAGGCAAAACAGGAGAACACTAAAGAATGGAACAACCACAGCTTGTTACTTTGC 740
Query 429 AACAATTCACACTGACTCATCTCTGCTCCTTGCCGACATTACAGATAAATTTGGACAGCGGGCATTTGTGGGCA 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AACAATTCACACTGACTCATCTCTGCTCCTTGCCGACATTACAGATAAATTTGGACAGCGGGCATTTGTGGGCA 814
Query 503 AAGTTTGCATGGATTTGAATGACACTTTTCCAGAATACAAGGAGACCACTGAGGAATCGATCAAGGAAACTGAG 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AAGTTTGCATGGATTTGAATGACACTTTTCCAGAATACAAGGAGACCACTGAGGAATCGATCAAGGAAACTGAG 888
Query 577 AGATTTGTGTCAGAAATGCTCCAAAAGAACTATTCTAGAGTGAAGCCCATAGTGACACCACGTTTTTCCCTCTC 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AGATTTGTGTCAGAAATGCTCCAAAAGAACTATTCTAGAGTGAAGCCCATAGTGACACCACGTTTTTCCCTCTC 962
Query 651 CTGCTCTGAGACTTTGATGGGTGAACTGGGCAACATTGCTAAAACCCGTGATTTGCACATTCAGAGCCATATAA 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CTGCTCTGAGACTTTGATGGGTGAACTGGGCAACATTGCTAAAACCCGTGATTTGCACATTCAGAGCCATATAA 1036
Query 725 GTGAAAATCGTGATGAAGTTGAAGCTGTGAAAAACTTATACCCCAGTTATAAAAACTACACATCTGTGTATGAT 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GTGAAAATCGTGATGAAGTTGAAGCTGTGAAAAACTTATACCCCAGTTATAAAAACTACACATCTGTGTATGAT 1110
Query 799 AAAAACAATCTTTTGACAAATAAGACAGTGATGGCACACGGCTGCTACCTCTCTGCAGAAGAACTGAACGTATT 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AAAAACAATCTTTTGACAAATAAGACAGTGATGGCACACGGCTGCTACCTCTCTGCAGAAGAACTGAACGTATT 1184
Query 873 CCATGAACGAGGAGCATCCATCGCACACTGTCCCAATTCTAATTTATCGCTCAGCAGTGGATTTCTAAATGTGC 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CCATGAACGAGGAGCATCCATCGCACACTGTCCCAATTCTAATTTATCGCTCAGCAGTGGATTTCTAAATGTGC 1258
Query 947 TAGAAGTCCTGAAACATGAAGTCAAGATAGGGCTGGGTACAGACGTGGCTGGTGGCTATTCATATTCCATGCTT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TAGAAGTCCTGAAACATGAAGTCAAGATAGGGCTGGGTACAGACGTGGCTGGTGGCTATTCATATTCCATGCTT 1332
Query 1021 GATGCAATCAGAAGAGCAGTGATGGTTTCCAATATCCTTTTAATTAATAAGGTAAATGAGAAAAGCCTCACCCT 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GATGCAATCAGAAGAGCAGTGATGGTTTCCAATATCCTTTTAATTAATAAGGTAAATGAGAAAAGCCTCACCCT 1406
Query 1095 CAAAGAAGTCTTCAGACTAGCTACTCTTGGAGGAAGCCAAGCCCTGGGGCTGGATGGTGAGATTGGAAACTTTG 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 CAAAGAAGTCTTCAGACTAGCTACTCTTGGAGGAAGCCAAGCCCTGGGGCTGGATGGTGAGATTGGAAACTTTG 1480
Query 1169 AAGTGGGCAAGGAATTTGATGCCATCCTGATCAACCCCAAAGCATCCGACTCTCCCATTGACCTGTTTTATGGG 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AAGTGGGCAAGGAATTTGATGCCATCCTGATCAACCCCAAAGCATCCGACTCTCCCATTGACCTGTTTTATGGG 1554
Query 1243 GACTTTTTTGGTGATATTTCTGAGGCTGTTATCCAGAAGTTCCTCTATCTAGGAGATGATCGAAATATTGAAGA 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GACTTTTTTGGTGATATTTCTGAGGCTGTTATCCAGAAGTTCCTCTATCTAGGAGATGATCGAAATATTGAAGA 1628
Query 1317 GGTTTATGTGGGCGGAAAGCAGGTGGTTCCGTTTTCCAGCTCAGTG---------------------------- 1362
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 GGTTTATGTGGGCGGAAAGCAGGTGGTTCCGTTTTCCAGCTCAGTGAAAGAAACAATTCACTTACCAGCCTCCT 1702
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 1703 CACCCCATCCTCCACCATTTCCTTAATGTTCCATGGTATTTTCAACGGAATACACTTTGAAAGTTCTCAGAATA 1776
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 1777 ACTGTAGAATGTGCTGGAAATGGAACATTCTCAGATAAGGAGGAACTGGCCAGATCAAACTAAGCTGTGTTCCC 1850
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 1851 ATCCCTCCTGAAACAGGATCTTATGGTGCTTTAGCCCAGGACGTCAAGTATCCCCTAGATTTCTAAATTTGGTG 1924
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 1925 CCCTGGAACACTTGAGAGACTTCAAATGGCCTTGGTGATTTTTGTTTTTGTTTTTCTTCCACAAAAGTTGGTTT 1998
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 1999 CATCCACACCTGAGTTAAGGAACAAGTGAAGGATGGCTTTGTGTTTGTAAAGCGCTTTGAAAACCTTGACTGAA 2072
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2073 GCACAGCAACAGATAAAGGCAAGAAAGGCTTAATTTATCAAAGTATTGCAGAACAGATGAGCCCTCAAATTGGA 2146
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2147 GCTTTGCCCAGGAAGGTTATCCGGGAAAGAATTCAGTGTTAGACAGCATCTTTTGTTGAATAGTACTGCTCCCT 2220
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2221 ACAGAGCAGGGCTAACTCATAGGCAGTGCAGCTAAAGTTGACAACATATGAGTTCTTGGCAGCTGTATTTATAC 2294
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2295 TCACTTAAACCTGCTTTCAATTACATGCAAATTAACGGGTGGGTGGATGCAAATTGAGGGGCAGTTTGTTTAGA 2368
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2369 ATTTTCTAGCAAAGGGGTAGTAACTTCCAGGTCATCCTCATAGCTTTTGTAAATTGTCATGGTGCTGGTGGGAG 2442
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2443 TGTCTTATGCTAATGAGCAATGAGGGCATCTATGGATTGCTTTGGTAGCCATCTGCTGGTTCCTACCAGTTTCT 2516
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2517 TCACTTTATCCTGTTTAGACCAGATCCTGTTTTGGTCAGCAAGGTTGTGACCAGAAAACAAGGTTTAGACCAGA 2590
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2591 TCCTGTTTTGGTCAGCAAGGTTGTGCCTGTCTCCTACCTCAAAAGGTTACTCAAAAAGATAAATTAAGGGGCTC 2664
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2665 AGAAATACAAGTGCACACACTTCTTTCAATTCATGAACTTTCTTAGTGGAACTATGAAAGATGAATTGGCAACT 2738
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2739 TACGTATTTTGGACTAATTTATATAACCACAACAAACCCTCCAGCATCATAAACGTGTCCTGGCATAATGCAAT 2812
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2813 GGCATGCTATCCATCCCGTAAAATCTCATGGTAGTGACTCAGAAACGTGGGGGTAAAAGAGAAGCTATGGAGTT 2886
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2887 TAGGTTGTTTGTTTATTTATTAAAGCTGGGTAATAGGCTTTTTATGTCATCCAGGACAATTTTGCAATCTCTTA 2960
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2961 TGGATGTATTATTTATTGTAACTTATGGGGGAAACTCATGATGAGACTCACATTCCCTAGAAAATTTTCACATT 3034
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 3035 CCCTAGAAAATTATTGCCCAGACTAAATAAGAAGTCAGTATAAATGCATATAAAAACTCATTTAATGTTGTTTG 3108
Query 1363 ------------------------------------------ 1362
Sbjct 3109 TAGTACTGTAGACCATTTAACATGGCATAATTTAATCCAAAA 3150
