Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_02211
- Subject:
- XR_002956833.1
- Aligned Length:
- 3093
- Identities:
- 1343
- Gaps:
- 1741
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATTGGCATTGAGGAGGTAGGGAGCCAGCCCCTGGGCGCGGCCTGCAGGGTACCGGCAACCGCCCGGGTAAGCGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGGCAGGACAAGGCCGGAGCCTGTGTCCGCCCGGCAGCCGCCCGCAGCTGCAGAGAGTCCCGCTGCGTCTCCGC 148
Query 1 --------------------------------------------------ATGTGTGCCGCTCAGATGCCGCCC 24
||||||||||||||||||||||||
Sbjct 149 CGCGTGCGCCCTCCTCGACCAGCAGACCCGCGCTGCGCTCCGCCGCTGACATGTGTGCCGCTCAGATGCCGCCC 222
Query 25 CTGGCGCACATCTTCCGAGGGACGTTCGTCCACTCCACCTGGACCTGCCCCATGGAGGTGCTGCGGGATCACCT 98
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CTGGCGCACATCTTCCGAGGGACGTTCGTCCACTCCACCTGGACCTGCCCCATGGAGGTGCTGCGGGATCACCT 296
Query 99 CCTCGGCGTGAGCGACAGCGGCAAAATAGTGTTTTTAGAAGAAGCATCTCAACAGGAAAAACTGGCCAAAGAAT 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CCTCGGCGTGAGCGACAGCGGCAAAATAGTGTTTTTAGAAGAAGCATCTCAACAGGAAAAACTGGCCAAAGAAT 370
Query 173 GGTGCTTCAAGCCGTGTGAAATAAGAGAACTGAGCCACCATGAGTTCTTCATGCCTGGGCTGGTTGATACACAC 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGTGCTTCAAGCCGTGTGAAATAAGAGAACTGAGCCACCATGAGTTCTTCATGCCTGGGCTGGTTGATACACAC 444
Query 247 ATCCATGCCTCTCAGTATTCCTTTGCTGGAAGTAGCATAGACCTGCCACTCTTGGAGTGGCTGACCAAGTACAC 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ATCCATGCCTCTCAGTATTCCTTTGCTGGAAGTAGCATAGACCTGCCACTCTTGGAGTGGCTGACCAAGTACAC 518
Query 321 ATTTCCTGCAGAACACAGATTCCAGAACATCGACTTTGCAGAAGAAGTATATACCAGAGTTGT----------- 383
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ATTTCCTGCAGAACACAGATTCCAGAACATCGACTTTGCAGAAGAAGTATATACCAGAGTTGTCACACTTGAGC 592
Query 384 -------------------------------------------------------------------------- 383
Sbjct 593 TTCTGATGTCTGTACTAGTCAAGAAAACCCTGTTTTTTCACAAAGGAGGAAACATGGAATGTAAGCAACCTTCT 666
Query 384 -----------------------------CAGGAGAACACTAAAGAATGGAACAACCACAGCTTGTTACTTTGC 428
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CAAGGTCACGTAGCTAATAACAGGCAAAACAGGAGAACACTAAAGAATGGAACAACCACAGCTTGTTACTTTGC 740
Query 429 AACAATTCACACTGACTCATCTCTGCTCCTTGCCGACATTACAGATAAATTTGGACAGCGGGCATTTGTGGGCA 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AACAATTCACACTGACTCATCTCTGCTCCTTGCCGACATTACAGATAAATTTGGACAGCGGGCATTTGTGGGCA 814
Query 503 AAGTTTGCATGGATTTGAATGACACTTTTCCAGAATACAAGGAGACCACTGAGGAATCGATCAAGGAAACTGAG 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 AAGTTTGCATGGATTTGAATGACACTTTTCCAGAATACAAGGAGACCACTGAGGAATCGATCAAGGAAACTGAG 888
Query 577 AGATTTGTGTCAGAAATGCTCCAAAAGAACTATTCTAGAGTGAAGCCCATAGTGACACCACGTTTTTCCCTCTC 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 AGATTTGTGTCAGAAATGCTCCAAAAGAACTATTCTAGAGTGAAGCCCATAGTGACACCACGTTTTTCCCTCTC 962
Query 651 CTGCTCTGAGACTTTGATGGGTGAACTGGGCAACATTGCTAAAACCCGTGATTTGCACATTCAGAGCCATATAA 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CTGCTCTGAGACTTTGATGGGTGAACTGGGCAACATTGCTAAAACCCGTGATTTGCACATTCAGAGCCATATAA 1036
Query 725 GTGAAAATCGTGATGAAGTTGAAGCTGTGAAAAACTTATACCCCAGTTATAAAAACTACACATCTGTGTATGAT 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GTGAAAATCGTGATGAAGTTGAAGCTGTGAAAAACTTATACCCCAGTTATAAAAACTACACATCTGTGTATGAT 1110
Query 799 AAAAACAATCTTTTGACAAATAAGACAGTGATGGCACACGGCTGCTACCTCTCTGCAGAAGAACTGAACGTATT 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 AAAAACAATCTTTTGACAAATAAGACAGTGATGGCACACGGCTGCTACCTCTCTGCAGAAGAACTGAACGTATT 1184
Query 873 CCATGAACGAGGAGCATCCATCGCACACTGTCCCAATTCTAATTTATCGCTCAGCAGTGGATTTCTAAATGTGC 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CCATGAACGAGGAGCATCCATCGCACACTGTCCCAATTCTAATTTATCGCTCAGCAGTGGATTTCTAAATGTGC 1258
Query 947 TAGAAGTCCTGAAACATGAAGTCAAGATAGGGCTGGGTACAGACGTGGCTGGTGGCTATTCATATTCCATGCTT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TAGAAGTCCTGAAACATGAAGTCAAGATAGGGCTGGGTACAGACGTGGCTGGTGGCTATTCATATTCCATGCTT 1332
Query 1021 GATGCAATCAGAAGAGCAGTGATGGTTTCCAATATCCTTTTAATTAATAAGGTAAATGAGAAAAGCCTCACCCT 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 GATGCAATCAGAAGAGCAGTGATGGTTTCCAATATCCTTTTAATTAATAAGGTAAATGAGAAAAGCCTCACCCT 1406
Query 1095 CAAAGAAGTCTTCAGACTAGCTACTCTTGGAGGAAGCCAAGCCCTGGGGCTGGATGGTGAGATTGGAAACTTTG 1168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 CAAAGAAGTCTTCAGACTAGCTACTCTTGGAGGAAGCCAAGCCCTGGGGCTGGATGGTGAGATTGGAAACTTTG 1480
Query 1169 AAGTGGGCAAGGAATTTGATGCCATCCTGATCAACCCCAAAGCATCCGACTCTCCCATTGACCTGTTTTATGGG 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AAGTGGGCAAGGAATTTGATGCCATCCTGATCAACCCCAAAGCATCCGACTCTCCCATTGACCTGTTTTATGGG 1554
Query 1243 GACTTTTTTGGTGATATTTCTGAGGCTGTTATCCAGAAGTTCCTCTATCTAGGAGA------------------ 1298
||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 1555 GACTTTTTTGGTGATATTTCTGAGGCTGTTATCCAGAAGTTCCTCTATCTAGGAAAGAAACAATTCACTTACCA 1628
Query 1299 ------------------------------------------------TGATCGAAATA----TTGAAGAGGTT 1320
|.|.||.|||| ||||| ||.|.
Sbjct 1629 GCCTCCTCACCCCATCCTCCACCATTTCCTTAATGTTCCATGGTATTTTCAACGGAATACACTTTGAA-AGTTC 1701
Query 1321 T---------------ATGTG--GG---CGGA------------AAGCAGG---TGGTTCCGTTTTCCAGCTCA 1359
| ||||| || .||| |||.||| ||| ||||.|||
Sbjct 1702 TCAGAATAACTGTAGAATGTGCTGGAAATGGAACATTCTCAGATAAGGAGGAACTGG---------CCAGATCA 1766
Query 1360 ---------GTG-------------------------------------------------------------- 1362
|||
Sbjct 1767 AACTAAGCTGTGTTCCCATCCCTCCTGAAACAGGATCTTATGGTGCTTTAGCCCAGGACGTCAAGTATCCCCTA 1840
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 1841 GATTTCTAAATTTGGTGCCCTGGAACACTTGAGAGACTTCAAATGGCCTTGGTGATTTTTGTTTTTGTTTTTCT 1914
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 1915 TCCACAAAAGTTGGTTTCATCCACACCTGAGTTAAGGAACAAGTGAAGGATGGCTTTGTGTTTGTAAAGCGCTT 1988
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 1989 TGAAAACCTTGACTGAAGCACAGCAACAGATAAAGGCAAGAAAGGCTTAATTTATCAAAGTATTGCAGAACAGA 2062
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2063 TGAGCCCTCAAATTGGAGCTTTGCCCAGGAAGGTTATCCGGGAAAGAATTCAGTGTTAGACAGCATCTTTTGTT 2136
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2137 GAATAGTACTGCTCCCTACAGAGCAGGGCTAACTCATAGGCAGTGCAGCTAAAGTTGACAACATATGAGTTCTT 2210
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2211 GGCAGCTGTATTTATACTCACTTAAACCTGCTTTCAATTACATGCAAATTAACGGGTGGGTGGATGCAAATTGA 2284
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2285 GGGGCAGTTTGTTTAGAATTTTCTAGCAAAGGGGTAGTAACTTCCAGGTCATCCTCATAGCTTTTGTAAATTGT 2358
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2359 CATGGTGCTGGTGGGAGTGTCTTATGCTAATGAGCAATGAGGGCATCTATGGATTGCTTTGGTAGCCATCTGCT 2432
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2433 GGTTCCTACCAGTTTCTTCACTTTATCCTGTTTAGACCAGATCCTGTTTTGGTCAGCAAGGTTGTGACCAGAAA 2506
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2507 ACAAGGTTTAGACCAGATCCTGTTTTGGTCAGCAAGGTTGTGCCTGTCTCCTACCTCAAAAGGTTACTCAAAAA 2580
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2581 GATAAATTAAGGGGCTCAGAAATACAAGTGCACACACTTCTTTCAATTCATGAACTTTCTTAGTGGAACTATGA 2654
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2655 AAGATGAATTGGCAACTTACGTATTTTGGACTAATTTATATAACCACAACAAACCCTCCAGCATCATAAACGTG 2728
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2729 TCCTGGCATAATGCAATGGCATGCTATCCATCCCGTAAAATCTCATGGTAGTGACTCAGAAACGTGGGGGTAAA 2802
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2803 AGAGAAGCTATGGAGTTTAGGTTGTTTGTTTATTTATTAAAGCTGGGTAATAGGCTTTTTATGTCATCCAGGAC 2876
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2877 AATTTTGCAATCTCTTATGGATGTATTATTTATTGTAACTTATGGGGGAAACTCATGATGAGACTCACATTCCC 2950
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2951 TAGAAAATTTTCACATTCCCTAGAAAATTATTGCCCAGACTAAATAAGAAGTCAGTATAAATGCATATAAAAAC 3024
Query 1363 ----------------------------------------------------------- 1362
Sbjct 3025 TCATTTAATGTTGTTTGTAGTACTGTAGACCATTTAACATGGCATAATTTAATCCAAAA 3083
