Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_02211
- Subject:
- XR_002956834.1
- Aligned Length:
- 5242
- Identities:
- 1336
- Gaps:
- 3892
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGAAAAATCCTATTGGCATTGAGGAGGTAGGGAGCCAGCCCCTGGGCGCGGCCTGCAGGGTACCGGCAACCGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGGGTAAGCGGGGGCAGGACAAGGCCGGAGCCTGTGTCCGCCCGGCAGCCGCCCGCAGCTGCAGAGAGTCCCGC 148
Query 1 -------------------------------------------------------------ATGTGTGCCGCTC 13
|||||||||||||
Sbjct 149 TGCGTCTCCGCCGCGTGCGCCCTCCTCGACCAGCAGACCCGCGCTGCGCTCCGCCGCTGACATGTGTGCCGCTC 222
Query 14 AGATGCCGCCCCTGGCGCACATCTTCCGAGGGACGTTCGTCCACTCCACCTGGACCTGCCCCATGGAGGTGCTG 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AGATGCCGCCCCTGGCGCACATCTTCCGAGGGACGTTCGTCCACTCCACCTGGACCTGCCCCATGGAGGTGCTG 296
Query 88 CGGGATCACCTCCTCGGCGTGAGCGACAGCGGCAAAATAGTGTTTTTAGAAGAAGCATCTCAACAGGAAAAACT 161
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 297 CGGGATCACCTCCTCGGCGTGAGCGACAGCGGCAAA----TGTTTTTAGAAGAAGCATCTCAACAGGAAAAACT 366
Query 162 GGCCAAAGAATGGTGCTTCAAGCCGTGTGAAATAAGAGAACTGAGCCACCATGAGTTCTTCATGCCTGGGCTGG 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 GGCCAAAGAATGGTGCTTCAAGCCGTGTGAAATAAGAGAACTGAGCCACCATGAGTTCTTCATGCCTGGGCTGG 440
Query 236 TTGATACACACATCCATGCCTCTCAGTATTCCTTTGCTGGAAGTAGCATAGACCTGCCACTCTTGGAGTGGCTG 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 TTGATACACACATCCATGCCTCTCAGTATTCCTTTGCTGGAAGTAGCATAGACCTGCCACTCTTGGAGTGGCTG 514
Query 310 ACCAAGTACACATTTCCTGCAGAACACAGATTCCAGAACATCGACTTTGCAGAAGAAGTATATACCAGAGTTGT 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 515 ACCAAGTACACATTTCCTGCAGAACACAGATTCCAGAACATCGACTTTGCAGAAGAAGTATATACCAGAGTTGT 588
Query 384 CAGGAGAACACTAAAGAATGGAACAACCACAGCTTGTTACTTTGCAACAATTCACACTGACTCATCTCTGCTCC 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 CAGGAGAACACTAAAGAATGGAACAACCACAGCTTGTTACTTTGCAACAATTCACACTGACTCATCTCTGCTCC 662
Query 458 TTGCCGACATTACAGATAAATTTGGACAGCGGGCATTTGTGGGCAAAGTTTGCATGGATTTGAATGACACTTTT 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 663 TTGCCGACATTACAGATAAATTTGGACAGCGGGCATTTGTGGGCAAAGTTTGCATGGATTTGAATGACACTTTT 736
Query 532 CCAGAATACAAGGAGACCACTGAGGAATCGATCAAGGAAACTGAGAGATTTGTGTCAGAAATGCTCCAAAAGAA 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 737 CCAGAATACAAGGAGACCACTGAGGAATCGATCAAGGAAACTGAGAGATTTGTGTCAGAAATGCTCCAAAAGAA 810
Query 606 CTATTCTAGAGTGAAGCCCATAGTGACACCACGTTTTTCCCTCTCCTGCTCTGAGACTTTGATGGGTGAACTGG 679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 CTATTCTAGAGTGAAGCCCATAGTGACACCACGTTTTTCCCTCTCCTGCTCTGAGACTTTGATGGGTGAACTGG 884
Query 680 GCAACATTGCTAAAACCCGTGATTTGCACATTCAGAGCCATATAAGTGAAAATCGTGATGAAGTTGAAGCTGTG 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 GCAACATTGCTAAAACCCGTGATTTGCACATTCAGAGCCATATAAGTGAAAATCGTGATGAAGTTGAAGCTGTG 958
Query 754 AAAAACTTATACCCCAGTTATAAAAACTACACATCTGTGTATGATAAAAACAATCTTTTGACAAATAAGACAGT 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 AAAAACTTATACCCCAGTTATAAAAACTACACATCTGTGTATGATAAAAACAATCTTTTGACAAATAAGACAGT 1032
Query 828 GATGGCACACGGCTGCTACCTCTCTGCAGAAGAACTGAACGTATTCCATGAACGAGGAGCATCCATCGCACACT 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 GATGGCACACGGCTGCTACCTCTCTGCAGAAGAACTGAACGTATTCCATGAACGAGGAGCATCCATCGCACACT 1106
Query 902 GTCCCAATTCTAATTTATCGCTCAGCAGTGGATTTCTAAATGTGCTAGAAGTCCTGAAACATGAAGTCAAGATA 975
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 GTCCCAATTCTAATTTATCGCTCAGCAGTGGATTTCTAAATGTGCTAGAAGTCCTGAAACATGAAGTCAAGATA 1180
Query 976 GGGCTGGGTACAGACGTGGCTGGTGGCTATTCATATTCCATGCTTGATGCAATCAGAAGAGCAGTGATGGTTTC 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 GGGCTGGGTACAGACGTGGCTGGTGGCTATTCATATTCCATGCTTGATGCAATCAGAAGAGCAGTGATGGTTTC 1254
Query 1050 CAATATCCTTTTAATTAATAAGGTAAATGAGAAAAGCCTCACCCTCAAAGAAGTCTTCAGACTAGCTACTCTTG 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 CAATATCCTTTTAATTAATAAGGTAAATGAGAAAAGCCTCACCCTCAAAGAAGTCTTCAGACTAGCTACTCTTG 1328
Query 1124 GAGGAAGCCAAGCCCTGGGGCTGGATGGTGAGATTGGAAACTTTGAAGTGGGCAAGGAATTTGATGCCATCCTG 1197
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 GAGGAAGCCAAGCCCTGGGGCTGGATGGTGAGATTGGAAACTTTGAAGTGGGCAAGGAATTTGATGCCATCCTG 1402
Query 1198 ATCAACCCCAAAGCATCCGACTCTCCCATTGACCTGTTTTATGGGGACTTTTTTGGTGATATTTCTGAGGCTGT 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 ATCAACCCCAAAGCATCCGACTCTCCCATTGACCTGTTTTATGGGGACTTTTTTGGTGATATTTCTGAGGCTGT 1476
Query 1272 TATCCAGAAGTTCCTCTATCTAGG-----AGATG-AT---------CGAAATATTGAAGAG------------- 1317
|||||||||||||||||||||||| ||||| || |.|||||||.||.||
Sbjct 1477 TATCCAGAAGTTCCTCTATCTAGGTAGGTAGATGCATGTCTCTATGCTAAATATTAAATAGAACCTTTCCCTGT 1550
Query 1318 GTTTATGTGGGCGGAAAGCAGGTGGTTC-----CGTTTTCC------------AGCTCAGTG------------ 1362
.|||.|.|.|| |.| |||.|| ..||.||| |.|||.|||
Sbjct 1551 CTTTTTCTTGG-GTA-------TGGCTCTATGTATTTATCCTACCATATATTAAACTCTGTGGATGATAATTTG 1616
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 1617 CTTTGATTCATTATTTTTTTAACAGTCTGAAGCATCAAGCCCATTGGTGGCACATTATTTAAAGGTTCTATTTG 1690
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 1691 AAATGCACATGACTCCCTCTAGTCATAAATTCTAAGCTGAGGAATGGAAGGCCAAAGGTGAAGAGATCTTCATG 1764
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 1765 TTCAACCCTCTTGTACTCATTCGGTATCTGACATACTGCCCTGCCATGTTTTTGTGACAAATGTATAGTAGAGT 1838
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 1839 CTCACCACACGTGCTGGTGATGTACTCACATTCAATTCCATTCACTGAGAGAGAGAGAAACAGTAATGCAGAAT 1912
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 1913 ATTCTACACTGCCTCCCATTCTGTTCAGTGAGCCCAGGACTGAGTGAACTCAAGATGGAAAGATGCATGTGTTA 1986
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 1987 CTTCTTGTGGAGCTGATTCTGGAGCGTAAAGAGTAGTATTTCTTTCTCAGTGGGGGCAAAATGTAAACCAACCA 2060
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2061 CTTCAGCTGAGAAAGGACAGCTATAGGGGGTTGATTCAACTTTATGTGATTTCTGCCTCTGGTGCAGAATTCAG 2134
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2135 ACCCTAATCATCAAATTAGCTATGGCATTTTCTACTAGTCATATCTTCCTGTTCAGATTATAAACAATCTGAGG 2208
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2209 GTTGGGGGAAAGCAGCTTTTAGTATTTCCTCTCCTAGAAGTATCTTTAAAAAAAATCTCTCCCAATGGCAAGGA 2282
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2283 AGATACTTATTGACACAAAAGGATTTTATACATGATTCCTTGATTTTTCTTTCAGGAGATGATCGAAATATTGA 2356
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2357 AGAGGTTTATGTGGGCGGAAAGCAGGTGGTTCCGTTTTCCAGCTCAGTGTAAGACCCTCGGGCGTCTACAAAGT 2430
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2431 TCTCCTGGGATTAGCGTGGTTCTGCATCTCCCTTGTGCCCAGGTGGAGTTAGAAAGTCAAAAAATAGTACCTTG 2504
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2505 TTCTTGGGATGACTATCCCTTTCTGTGTCTAGTTACAGTATTCACTTGACAAATAGTTCGAAGGAAGTTGCACT 2578
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2579 AATTCTCAACTCTGGTTGAGAGGGTTCATAAATTTCATGAAAATATCTCCCTTTGGAGCTGCTCAGACTTACTT 2652
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2653 TAAGCTCAAACAGAAGGGAATGCTATTACTGGTGGTGTTCCTACGGTAAGACTTAAGCAAAGCCTTTTTCATAT 2726
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2727 TTGAAAATGTGGAAAGAAAAGATGTTCCTAAAAGGTTAGATATTTTGAGCTAATAATTGCAAAAATTAGAAGAC 2800
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2801 TGAAAATGGACCCATGAGAGTATATTTTTATGAGGGAGCAAAAGTTAGACTGAGAACAAACGTTAGAAAATCAC 2874
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2875 TTCAGATTGTGTTTGAAAATTATATACTGAGCATACTAATTTAAAAAGAGAACTTGTTGAAATTTAAAACGTGT 2948
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 2949 TTCTAGGTTGACCTTGTGTTTTAGAAATTTGCACTTAATGGAATTTGCATTTCAGAGATGTGTTAGTGTTGTGC 3022
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 3023 TTTGCCTTCTTTGGCGATGAATGTCAGAAATTGAATGCCACATGCTTTCATAATATAGTTTTGTGCTTCAAAGT 3096
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 3097 GTTTGACAGAAGTTGGGTATTAAAGATTTAAAGTCTCTTAGGAATATTATTCATGTAACTCCATGGCATAAATA 3170
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 3171 GTTGTATTTTTGTGTACTTTAAAATCAACTTATAACTGTGAGATGTTATTGCTTCCATTTTATTAGAAGAGAAA 3244
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 3245 CAAATTCCATGCTTTATGGAATTTATGTAGACTGGAGTCTTCGTGAACTGGGGCAAATGCTGGCATCCAGGAGC 3318
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 3319 CGCCAATACTAACAGGACAGGTTCCATTGCCATGGCCTATTCCACCCAAACAATATGTTGTAGTTTCTGGAAAT 3392
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 3393 TCCATACTCAGATATCAGTCTGCTAGAACTTTAAAATGAAGGACAAATCCTGTTAAAGAAATATTGTTAAAAAT 3466
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 3467 CTTTAAACCCTGTGTATTGAAAGCACTCTATTTTCTAATTTTATCCAGTTTTCTGTTTAACTCCTTATAATGTT 3540
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 3541 TAGGATATTAAAATTTTAGGATAATGAAGAGTACATAATGTCCTACTTAATATTTATGTTAATAGGACTTAATT 3614
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 3615 CTTACTAGACATCTAGGAACATTACAAAGCAAAGACTATTTTTATGCTTCCATAACCTAGAATTAAAACCAAAT 3688
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 3689 TATGACCTTATGATAAATCTTTAAGTATTGGTGTGAATGTTATTTAAATTCTATATTTTTCTTATTTAATTACA 3762
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 3763 AATACTATAAATGAGCAAGGAAAAGGAATAGACTTTCTTAATATATTATAACACTCATTCCTAGAGCTTAGGGG 3836
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 3837 TGACTCTTTAATATTACCTTATAGTAGAAACTTTATGTAATATAGCTAACTCCGTATTTACAGAACAAAAAAAC 3910
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 3911 ACAGTTCCCCCTCCTGTAGTATAAATTTTATTTTCACATACTTAGCTAATTTAGCAGTAATTGGCCCAGTTTTT 3984
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 3985 TCCCTAATAGAAATACTTTTAGATTTGATTATGTATACATGACACCTAAAGAGGGAACAAAAGTTAGTTTTATT 4058
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 4059 TTTTTAATAAACAACAGAGTTTGTTTTGTGAGATAAGTATCTTAGTAAACCCAATTTCCAGTCTTAGTCTGTAT 4132
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 4133 TTCCAATATTTCTAATTCCTGAGCCACGTCAAAGATGCCTTGCCAAATTTCTCCCCATTTCTCTACGGGGCTAG 4206
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 4207 CAAAAATCTTCAGCTTTATCACTCAACCCCTGCCAAAGGAACTTGATTACATGGTGTCTAACCAAATGAGCAGG 4280
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 4281 CTTAGGAATTTAGATGAGATGTGTAAGATTCACTTACAGGCAGTAGCTGCTTCTAGCATTTGCAAGATCCTACA 4354
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 4355 CTTTTACCTTCTTTAAGGGTGTACATTTTGATGTTGAACATCAGTTTTCATGTAGACTTAGGACTCATGTGCAG 4428
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 4429 TAAATATAAATAAGTGTAGCATCAGAAGCAGTAGGAATGGCCGTATACAACCATCCTGTTAAACATTTAAATTT 4502
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 4503 AGCTCTGATAGTGTGTTAAGACCTGAATATCTTTCCTAGTAAAAATAGGATGTGTTGAAATATTTATATGTACT 4576
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 4577 TTGATCTCTCCACATCACTTATAACTTATGTGTTTTATTTCTCCAAGTGCGGTGTTCCTGAATGTTATGTATGC 4650
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 4651 TTTTTTTTCTGTACCACAGGCATTATCTATACCTGGGGCCAGATTTTCTGCACTTTGAAATGTTGCCTTTGCCT 4724
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 4725 AATGTAGGTTGACTTTCTGAATTGTGGAGAGGCACTTTTCCAAGCCAATCTTATTTGTCACTTTTTGTTTTAAT 4798
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 4799 ATCTTGCTCTCTGACAGGAAAGAAACAATTCACTTACCAGCCTCCTCACCCCATCCTCCACCATTTCCTTAATG 4872
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 4873 TTCCATGGTATTTTCAACGGAATACACTTTGAAAGTTCTCAGAATAACTGTAGAATGTGCTGGAAATGGAACAT 4946
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 4947 TCTCAGATAAGGAGGAACTGGCCAGATCAAACTAAGCTGTGTTCCCATCCCTCCTGAAACAGGATCTTATGGTG 5020
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 5021 CTTTAGCCCAGGACGTCAAGTATCCCCTAGGTATGAAACCCAGAGTGGAGCATGCTTTGAAGGTCCCTCAGCTA 5094
Query 1363 -------------------------------------------------------------------------- 1362
Sbjct 5095 CATGCAGACTAGACTGCATGTAGCTGACTCTAACTGCCCTGGGAAACTATCCTGAGCTTTGACAGACCTGCCAT 5168
Query 1363 -------------------------------------------------------------- 1362
Sbjct 5169 GAATCTTAAGCTTTTATTGTCCCTTGCTGCCTATCTGTGAGGAATAAAGTTGCTTCACTTAC 5230
