Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_02397
- Subject:
- NM_001265589.2
- Aligned Length:
- 3116
- Identities:
- 654
- Gaps:
- 2428
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCGGAGCCGTCGGCGGCCACTCAGTCCCATTCCATCTCCTCGTCGTCCTTCGGAGCCGAGCCGTCCGCGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CGGCGGCGGCGGGAGCCCAGGAGCCTGCCCCGCCCTGGGGACGAAGAGCTGCAGCTCCTCCTGTGCGGATTCCT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTGTTTCTTCCTCTTCCTCTCAGCCTGTATCTCTATTTTCGACCTCACAAGAGGGATTGAGCTCTCTTTGCTCT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GATGAGCCATCTTCAGAAATTATGACTTCTTCCTTTCTTTCATCTTCTGAAATACATAACACTGGCCTTACAAT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ACTACATGGAGAAAAAAGCCATGTGTTAGGGAGCCAGCCTATTTTAGCCAAAGAAGGAAAAGACCACTTGGATC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTCTAGATATGAAAAAGATGGAAAAGCCTCAGGGGACCAGCAACAACGTATCAGACTCTTCAGTTTCTCTTGCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCAGGAGTTCATTGTGACCGTCCTTCTATTCCAGCCAGTTTCCCAGAGCATCCTGCTTTTCTCTCAAAGAAAAT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TGGTCAAGTGGAAGAGCAAATAGATAAAGAGACCAAGAACCCAAATGGGGTATCAAGTAGGGAGGCTAAAACTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CATTGGATGCTGATGACAGATTCACTTTGCTGACAGCCCAGAAACCACCTACTGAGTACTCTAAGGTAGAAGGC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATTTATACATATTCTTTGTCTCCATCCAAAGTTTCAGGAGATGATGTTATTGAAAAGGATTCCCCTGAATCACC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ATTTGAAGTAATTATTGACAAAGCAGCATTTGACAAAGAATTTAAAGACTCATATAAGGAGAGCACAGATGATT 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TTGGTAGCTGGTCTGTGCACACTGATAAAGAATCATCCGAAGACATTTCAGAGACTAATGACAAGCTTTTTCCA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTGAGAAATAAAGAGGCAGGACGTTACCCAATGTCTGCATTGCTCAGTAGGCAGTTTTCACACACAAATGCAGC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 ACTGGAAGAGGTGTCCAGATGCGTGAATGATATGCATAACTTTACTAACGAAATACTGACTTGGGATCTGGTTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CCCAAGTGAAACAACAGACCGATAAATCTTCTGACTGCATCACAAAAACTACAGGACTTGACATGAGTGAATAT 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AATTCAGAAATTCCAGTTGTAAATCTTAAAACTAGCACTCATCAGAAAACTCCTGTATGTTCTATTGATGGGAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CACTCCCATCACTAAATCAACAGGTGATTGGGCAGAAGCATCTCTCCAGCAAGAAAATGCTATTACTGGAAAAC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 CTGTACCTGACTCTTTGAATTCCACAAAAGAATTCAGTATCAAAGGTGTGCAAGGCAATATGCAGAAACAGGAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GACACACTTGCAGAATTACCTGGATCTCCACCTGAGAAATGTGACTCTTTGGGTTCTGGAGTGGCCACAGTGAA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGTGGTTTTACCTGATGACCACCTGAAAGATGAAATGGACTGGCAGAGCTCTGCATTGGGAGAAATCACAGAAG 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CTGATAGTTCTGGTGAGTCTGATGACACAGTAATAGAGGACATCACAGCAGATACATCATTTGAAAATAACAAA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 ATTCAGGCTGAAAAACCTGTTTCCATTCCAAGTGCTGTTGTAAAAACAGGTGAAAGAGAAATCAAAGAGATTCC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CAGTTGTGAGAGAGAAGAAAAAACATCTAAAAACTTTGAAGAATTGGTCAGTGACTCTGAGCTGCATCAAGATC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 AGCCTGATATTCTTGGAAGGAGTCCAGCTAGTGAGGCAGCATGTTCAAAAGTACCCGATACGAATGTCTCCTTA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GAAGATGTGAGTGAAGTTGCTCCTGAAAAGCCTATTACTACTGAGAACCCCAAACTTCCTTCAACAGTGTCTCC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AAATGTTTTTAATGAGACAGAATTCTCATTAAATGTGACAACATCTGCCTATTTGGAGTCATTACATGGGAAAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 ATGTTAAACATATAGATGATTCCTCCCCAGAGGACCTGATAGCAGCCTTTACAGAAACCAGAGATAAAGGAATA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GTAGATAGTGAAAGAAATGCTTTTAAAGCAATATCAGAGAAGATGACAGACTTTAAAACAACTCCTCCTGTAGA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 AGTCTTACATGAAAATGAGTCCGGTGGTTCTGAAATTAAAGACATTGGAAGCAAATACAGTGAACAAAGCAAAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 AAACAAATGGAAGTGAGCCTCTAGGTGTTTTCCCTACCCAAGGTACTCCAGTAGCATCTCTTGACTTAGAACAA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GAACAGCTCACAATTAAGGCTCTTAAAGAATTAGGTGAAAGACAGGTTGAGAAGTCAACTTCTGCACAGCGTGA 2294
Query 1 ------ATGGC----------------GGAGC---------CGTCGGC-----------GGCCACTCAG-TCCC 31
||.|| |.||| |.|..|| ||||||..|| ||..
Sbjct 2295 CGCAGAATTGCCTTCTGAAGAAGTACTGAAGCAAACTTTCACATTTGCTCCAGAATCTTGGCCACAGAGATCAT 2368
Query 32 ATTCCATCTCCTCG-TCGTCCT-TC------GGAGCCGAGCCGTCCGCGCCCGGCGGCGGCGGGA--GCCCAGG 95
||..|| ||||.| .|||..| || |||.|.||.| ..|||| .|||||.
Sbjct 2369 ATGACA--TCCTAGAACGTAATGTCAAGAATGGATCTGATC------------------TTGGGATTTCCCAGA 2422
Query 96 AGCC------------------------------TGC-----CCCGCCCTGG--GGAC-GAAGAGCT------G 125
|||| ||| ||.|||.|.| .||| |||..|.| |
Sbjct 2423 AGCCCATCACTATCAGAGAAACTACTAGGGTAGATGCTGTTTCCAGCCTTAGCAAGACTGAATTGGTAAAAAAG 2496
Query 126 CAGCTCCT-------CCTGTG----------CGGTGCACGATCTGATTTTCTGGAGAGATGTGAAGAAGACTGG 182
||..|||| |.|.|| |.|||||||||||||||||||||||||||||||||||||||||
Sbjct 2497 CATGTCCTAGCAAGACTTCTGACAGACTTCTCAGTGCACGATCTGATTTTCTGGAGAGATGTGAAGAAGACTGG 2570
Query 183 GTTTGTCTTTGGCACCACGCTGATCATGCTGCTTTCCCTGGCAGCTTTCAGTGTCATCAGTGTGGTTTCTTACC 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2571 GTTTGTCTTTGGCACCACGCTGATCATGCTGCTTTCCCTGGCAGCTTTCAGTGTCATCAGTGTGGTTTCTTACC 2644
Query 257 TCATCCTGGCTCTTCTCTCTGTCACCATCAGCTTCAGGATCTACAAGTCCGTCATCCAAGCTGTACAGAAGTCA 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2645 TCATCCTGGCTCTTCTCTCTGTCACCATCAGCTTCAGGATCTACAAGTCCGTCATCCAAGCTGTACAGAAGTCA 2718
Query 331 GAAGAAGGCCATCCATTCAAAGCCTACCTGGACGTAGACATTACTCTGTCCTCAGAAGCTTTCCATAATTACAT 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2719 GAAGAAGGCCATCCATTCAAAGCCTACCTGGACGTAGACATTACTCTGTCCTCAGAAGCTTTCCATAATTACAT 2792
Query 405 GAATGCTGCCATGGTGCACATCAACAGGGCCCTGAAACTCATTATTCGTCTCTTTCTGGTAGAAGATCTGGTTG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2793 GAATGCTGCCATGGTGCACATCAACAGGGCCCTGAAACTCATTATTCGTCTCTTTCTGGTAGAAGATCTGGTTG 2866
Query 479 ACTCCTTGAAGCTGGCTGTCTTCATGTGGCTGATGACCTATGTTGGTGCTGTTTTTAACGGAATCACCCTTCTA 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2867 ACTCCTTGAAGCTGGCTGTCTTCATGTGGCTGATGACCTATGTTGGTGCTGTTTTTAACGGAATCACCCTTCTA 2940
Query 553 ATTCTTGCTGAACTGCTCATTTTCAGTGTCCCGATTGTCTATGAGAAGTACAAGACCCAGATTGATCACTATGT 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2941 ATTCTTGCTGAACTGCTCATTTTCAGTGTCCCGATTGTCTATGAGAAGTACAAGACCCAGATTGATCACTATGT 3014
Query 627 TGGCATCGCCCGAGATCAGACCAAGTCAATTGTTGAAAAGATCCAAGCAAAACTCCCTGGAATCGCCAAAAAAA 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3015 TGGCATCGCCCGAGATCAGACCAAGTCAATTGTTGAAAAGATCCAAGCAAAACTCCCTGGAATCGCCAAAAAAA 3088
Query 701 AGGCAGAA 708
||||||||
Sbjct 3089 AGGCAGAA 3096
