Nucleotide Global Alignment

Description

• Query: ccsbBroadEn_02749
• Subject: NM_001113211.1
• Aligned Length: 1341
• Identities: 943
• Gaps: 258

Alignment

Query    1  ATGGCGGGAGGAATGAAAGTGGCGGTCTCGCCGGCAGTTGGTCCCGGGCCCTGGGGCTCGGGAGTCGGGGGCGG  74
            ||||||||||||||.||||||.||||.|.|.||||.||||||||.||||||.||.|||.|||.|.|||||||||
Sbjct    1  ATGGCGGGAGGAATCAAAGTGTCGGTGTGGTCGGCGGTTGGTCCAGGGCCCCGGTGCTGGGGGGCCGGGGGCGG  74

Query   75  TGGGACAGTGC-----GGCTACTCTTGATCCTCTCCGGCTGCTTGGTCTACGGCACAGCTGAAACTGATGTAAA  143
            .||  |.|.||     ||||.||||||.||.||.||||||||.||||||.||||.|||      ||||||||||
Sbjct   75  CGG--CGGCGCCACATGGCTGCTCTTGGTCGTCGCCGGCTGCGTGGTCTGCGGCTCAG------CTGATGTAAA  140

Query  144  TGTGGTCATGCTTCAGGAATCCCAAGTT--TGTGAAAAGCGTGCCAGCCAACAATTCTGTTACACAAATGTGCT  215
            ||||||||||||||||||||||||||||  |.||||     |.||||.||||||||||||||.|.|||||||||
Sbjct  141  TGTGGTCATGCTTCAGGAATCCCAAGTTGATATGAA-----TTCCAGTCAACAATTCTGTTATAAAAATGTGCT  209

Query  216  TATCCCAAAATGGCATGATATATGGACACGGATACAGATCCGAGTAAATAGTTCCAGATTGGTTCGAGTCACCC  289
            |||||||||.|||||||||||||||||||||||||||.|.||.|||||||||||||..|||||.|||||.||||
Sbjct  210  TATCCCAAAGTGGCATGATATATGGACACGGATACAGGTTCGGGTAAATAGTTCCAAGTTGGTCCGAGTTACCC  283

Query  290  AGGTGGAGAATGAGGAGAAACTGAAGGAGCTAGAGCA-------------------------------------  326
            |||||||.|||||||||||.|||||||||||||||||                                     
Sbjct  284  AGGTGGACAATGAGGAGAAGCTGAAGGAGCTAGAGCAGTTTAGTATCTGGAACTTTTTTTCTTCTTTTTTAAAA  357

Query  327  --------------------------------------------------------------------------  326
                                                                                      
Sbjct  358  GAGAAATTGAATGACACCTATGTTAACGTGGGTCTGTACAGCACTAAAACCTGCCTCAAGGTTGAGATGATAGA  431

Query  327  --------------------------------------------------------------------------  326
                                                                                      
Sbjct  432  GAAGGACACCACGTACAGTGTCACTGTGACCCGGAGATTTGACCCCAAACTCTTCCTTGTTTTCCTCCTCGGAC  505

Query  327  ----------------------------------AAGTCAAATTTTCTACTACTCTACTGGGATGACTGTGGGA  366
                                              .|||||||||||||||||.||.||||||||||.|||||||
Sbjct  506  TGACACTGTTTTTTTGTGGAGACTTGTTGAGCAGGAGTCAAATTTTCTACTATTCCACTGGGATGAGTGTGGGA  579

Query  367  ATTGTGGCCTCTCTGCTAATCATCATTTTTATACTATCTAAGTTTATGCCTAAGAAAAGTCCCATTTACGTCAT  440
            ||.|||||||||||..|||||.||||||||||..|.||||||||||||||.||||.|||.||||||||||||||
Sbjct  580  ATCGTGGCCTCTCTCTTAATCGTCATTTTTATGATCTCTAAGTTTATGCCCAAGAGAAGCCCCATTTACGTCAT  653

Query  441  CCTGGTGGGAGGCTGGTCTTTTTCTCTGTACCTCATTCAACTAGTTTTTAAAAATTTACAAGAGATCTGGAGGT  514
            ||||||.|||||||||||.||.|||||||||||||||||.|||||||||||.||||||||.|||||.||||||.
Sbjct  654  CCTGGTAGGAGGCTGGTCCTTCTCTCTGTACCTCATTCAGCTAGTTTTTAAGAATTTACAGGAGATATGGAGGA  727

Query  515  GTTACTGGCAGTATCTTTTAAGTTATGTCCTCACAGTTGGATTCATGAGTTTTGCAGTATGTTACAAGTATGGG  588
            ||||||||||.||||||.||||.||..|||||||||||||||||||||||||||||||.||.|||||.||||||
Sbjct  728  GTTACTGGCATTATCTTCTAAGCTACATCCTCACAGTTGGATTCATGAGTTTTGCAGTGTGCTACAAATATGGG  801

Query  589  CCCTTGGAGAATGAACGAAGTATCAACCTGCTGACCTGGACCTTGCAGCTGATGGGCCTGTGTTTCATGTATTC  662
            |||.||||.|||||||||||.||.|||||||||||||||||..||||||||.||||||||.|..||||||||||
Sbjct  802  CCCCTGGAAAATGAACGAAGCATTAACCTGCTGACCTGGACGCTGCAGCTGCTGGGCCTGGGACTCATGTATTC  875

Query  663  TGGCATCCAGATACCACATATTGCCCTTGCCATTATCATCATTGCTCTTTGTACTAAGAACCTGGAACACCCTA  736
            ..|.||||||||.||.||..|||||.||||..|.|||.|||||||.||.||.|||||||||||||||.||||||
Sbjct  876  CAGTATCCAGATCCCGCACGTTGCCTTTGCTCTCATCGTCATTGCACTGTGCACTAAGAACCTGGAATACCCTA  949

Query  737  TTCAGTGGCTGTACATCACCTGCAGAAAGGTGTGTAAGGGAGCAGAAAAGCCTGTTCCCCCTCGTCTCCTGACA  810
            |.||.|||||||.||.|||||.|||||.|.|||||||||.|.|||.|||||||||.||||||||.|||||||||
Sbjct  950  TCCACTGGCTGTGCAGCACCTACAGAAGGATGTGTAAGGCATCAGGAAAGCCTGTCCCCCCTCGCCTCCTGACA  1023

Query  811  GAAGAAGAATATCGGATACAAGGAGAGGTAGAAACCCGAAAGGCTTTAGAGGAGCTCCGAGAATTTTGTAACAG  884
            ||||||||.||||||||||||||||||||.||.||||.||||||||||.||||.||||||||||||||||||||
Sbjct 1024  GAAGAAGAGTATCGGATACAAGGAGAGGTGGAGACCCAAAAGGCTTTACAGGAACTCCGAGAATTTTGTAACAG  1097

Query  885  TCCAGACTGCTCTGCTTGGAAGACTGTTTCTCGAATCCAGTCTCCAAAAAGATTTGCTGACTTTGTGGAAGGCT  958
            |||.||.||||||||.||||||||..|.||||||||.|||||||||||||||||||||||||||||||||||.|
Sbjct 1098  TCCGGAGTGCTCTGCCTGGAAGACCATATCTCGAATTCAGTCTCCAAAAAGATTTGCTGACTTTGTGGAAGGTT  1171

Query  959  CTTCCCACCTCACGCCAAATGAAGTTTCTGTCCATGAGCAGGAGTATGGATTAGGGAGCATTATTGCCCAGGAT  1032
            |||.|||||||||||||||||||||||||||.||.||.|||||||||||||||||||||||..||.||||||||
Sbjct 1172  CTTTCCACCTCACGCCAAATGAAGTTTCTGTTCACGAACAGGAGTATGGATTAGGGAGCATCTTTACCCAGGAT  1245

Query 1033  GAAATCTATGAGGAAGC-ATCCTCTGAGGAGGAGGACTCATATTCTCGGTGTCCTGCTATCACACAGAACAACT  1105
            ||          |.||| .|||||.||.|||||||.||||.|      ||..||..||.||||||||||||| |
Sbjct 1246  GA----------GGAGCTGTCCTCAGAAGAGGAGGGCTCAGA------GTACCCCACTTTCACACAGAACAA-T  1302

Query 1106  TTCTAACC-  1113
            ||||...| 
Sbjct 1303  TTCTTGACT  1311