Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_02802
- Subject:
- NR_045999.2
- Aligned Length:
- 3515
- Identities:
- 843
- Gaps:
- 2672
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CTTGACGCTGTGGCCCGGAAGTGGAGCGGCTGTCGCAGTGCGGCTCCGGCAGTGGCAGCGGAGGCCTGTGTTTG 74
Query 1 ----------------------ATGGCGAGCGCAACTGCACCTGCAGCCGCAGTCCCCACCCTGGCTTCGCCTT 52
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 CGGCCTTCGGCAAGCGACTGAGATGGCGAGCGCAACTGCACCTGCAGCCGCAGTCCCCACCCTGGCTTCGCCTT 148
Query 53 TGGAGCAGCTCCGGCACTTGGCGGAGGAGCTGCGGTTGCTCCTGCCTCGAGTGCGGGTCGGCGAAGCCCAGGAG 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TGGAGCAGCTCCGGCACTTGGCGGAGGAGCTGCGGTTGCTCCTGCCTCGAGTGCGG------------------ 204
Query 127 ACCACCGAGGAGTTTAATCGAGAGATGTTCTGGAGAAGACTCAATGAGGCAGCTGTGACTGTGTCAAGGGAAGC 200
Sbjct 205 -------------------------------------------------------------------------- 204
Query 201 CACGACTCTGACCATAGTCTTCTCTCAGCTTCCACTGCCGTCTCCACAGGAAACCCAGAAGTTCTGTGAACAAG 274
||||||||||||||||||||||||||
Sbjct 205 ------------------------------------------------GGAAACCCAGAAGTTCTGTGAACAAG 230
Query 275 TCCATGCTGCCATCAAGGCATTTATTGCAGTGTACTATTTGCTTCCAAAGGATCAGGGGATCACCCTGAGAAAG 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TCCATGCTGCCATCAAGGCATTTATTGCAGTGTACTATTTGCTTCCAAAGGATCAG------------------ 286
Query 349 CTGGTACGGGGCGCCACCCTGGACATCGTGGATGGCATGGCTCAGCTCATGGAAGTACTTTCCGTCACTCCAAC 422
Sbjct 287 -------------------------------------------------------------------------- 286
Query 423 TCAGAGCCCTGAGAACAATGACCTTATTTCCTACAACAGTGTCTGGGTTGCGTGCCAGCAGATGCCTCAGATAC 496
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 287 -----GCCCTGAGAACAATGACCTTATTTCCTACAACAGTGTCTGGGTTGCGTGCCAGCAGATGCCTCAGATAC 355
Query 497 CAAGAGATAACAAAGCTGCAGCTCTTTTGATGCTGACCAAGAATGTGGATTTTGTGAAGGATGCACATGAAGAA 570
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 CAAGAGATAACAAAGCTGCAGCTCTTTTGATGCTGACCAAGAATGTGGATTTTGTGAAGGATGCACATGAAGAA 429
Query 571 ATGGAGCAGGCTGTGGAAGAATGTGACCCTTACTCTGGCCTCTTGAATGATACTGAGGAGAACAACTCTGACAA 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 ATGGAGCAGGCTGTGGAAGAATGTGACCCTTACTCTGGCCTCTTGAATGATACTGAGGAGAACAACTCTGACAA 503
Query 645 CCACAATCATGAGGATGATGTGTTGGGGTTTCCCAGCAATCAGGACTTGTATTGGTCAGAGGACGATCAAGAGC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 CCACAATCATGAGGATGATGTGTTGGGGTTTCCCAGCAATCAGGACTTGTATTGGTCAGAGGACGATCAAGAGC 577
Query 719 TCATAATCCCATGCCTTGCGCTGGTGAGAGCATCCAAAGCCTGCCTGAAGAAAATTCGGATGTTAGTGGCAGAG 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 TCATAATCCCATGCCTTGCGCTGGTGAGAGCATCCAAAGCCTGCCTGAAGAAAATTCGGATGTTAGTGGCAGAG 651
Query 793 AATGGGAAGAAGGATCAGGTGGCACAGCTGGATGACATTGTGGATATTTCTGATGAAATCAGCCCTAGTGTGGA 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 AATGGGAAGAAGGATCAGGTGGCACAGCTGGATGACATTGTGGATATTTCTGATGAAATCAGCCCTAGTGTGGA 725
Query 867 TGATTTGGCTCTGAGCATATATCCACCTATGTGTCACCTGACCGTGCGAATCAATTCTGCGAAACTTGTATCTG 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 726 TGATTTGGCTCTGAGCATATATCCACCTATGTGTCACCTGACCGTGCGAATCAATTCTGCGAAACTTGTATCTG 799
Query 941 TTTTAAAGAAGGCACTTGAAATTACAAAAGCAAGTCATGTGACCCCTCAGCCAGAAGATAGTTGGATCCCTTTA 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 TTTTAAAGAAGGCACTTGAAATTACAAAAGCAAGTCATGTGACCCCTCAGCCAGAAGATAGTTGGATCCCTTTA 873
Query 1015 CTTATTAATGCCATTGATCATTGCATGAATAGAATCAAGGAGCTCACTCAGAGTGAACTTGAATTA-------- 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 CTTATTAATGCCATTGATCATTGCATGAATAGAATCAAGGAGCTCACTCAGAGTGAACTTGAATTATGACTTTT 947
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 948 CAGGCTCATTTGTACTCTCTTCCCCTCTCATCGTCATGGTCAGGCTCTGATACCTGCTTTTAAAATGGAGCTAG 1021
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 1022 AATGCTTGCTGGATTGAAAGGGAGTGCCTATCTATATTTAGCAAGAGACACTATTACCAAAGATTGTTGGTTAG 1095
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 1096 GCCAGATTGACACCTATTTATAAACCATATGCGTATATTTTTCTGTGCTATATATGAAAAATAATTGCATGATT 1169
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 1170 TCTCATTCCTGAGTCATTTCTCAGAGATTCCTAGGAAAGCTGCCTTATTCTCTTTTTGCAGTAAAGTATGTTGT 1243
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 1244 TTTCATTGTAAAGATGTTGATGGTCTCAATAAAATGCTAACTTGCCAGTGATTAAATGAGTGCCCTTCCAAAGT 1317
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 1318 TTCTTTTTACCAGAAATACAGTGGATTGAGACTAGAACATTGCTTTCATTTGGGTTTGTAGGTTTAAAAATCTG 1391
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 1392 ATTCTAATCAGAAGTATATTTAGAACAAAACACTTTATTTATAAAAGATGACTCCAAAATTCATCTTAGTATTT 1465
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 1466 CACCATGTTATATATTATTATCAGCAAGTCCTTCTGAATATTATCACAGATTACTCCATGTCTCTAAAATATAT 1539
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 1540 TGGCATTGAGCTCATTTGTTAGGTTTGCCCACCTTATTGAACAGATTTATTTTCCTTATACATACTTGTGTTGT 1613
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 1614 CCTTGGTTACGTGTGTCCCCAAATGTAAATACCAAATTTTTATAAATCAAAAATTTTTTAGTGTGTAAGAGATT 1687
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 1688 TTATGTAATTTTAAGGGCCTTTTCAGTTCATCCTTTTGCAAAACCATCACCACTTAATTATACTTTTGCATCAG 1761
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 1762 TCTAGAAGACTGCATATTGGAAAGCAGTGTAAATCTATAATGATGTATATTCTGGTGAGCTGAATAGGGCATTA 1835
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 1836 TGCATGTCCTACAGGTCTCCGCCACCTCTCATGCCCATCATCTTCCTTTTGTAGGTGTAATTCATAACATATGC 1909
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 1910 CTTTCTGCTGTCTTTAGGTATAATCAGCAACAGCAGTCATTCTTTGAGTGACTAATGTATACTTGGGGTTGGGG 1983
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 1984 TTGAAATTCCTTAAGCCAAATGAGTTTTAGCTTACTGTTTTGAAGTGCCATTTTGTATTGTTAACAAGTGTCAT 2057
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 2058 GAAGGGAAGGAACTAAAATCAAACTGACAGAGTGTCAAGGCAACAAAATAACATAAACAAAATAATAACATTGT 2131
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 2132 ACAACAGTCTAGTTCTTTTATCCTTTCATATAGAGCCTATTTTTTATATACTTTTATATTTCTCTACTGGACCA 2205
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 2206 AATTCATGTTATTAACATCAGACTTTAATTGTGGGATACTTAATGAATATAGAACTCTAATATAAAGACTTACC 2279
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 2280 TCTAGCTGAATTATTCTCTCAGGTCCTGTATTGTATAACTTCGTTCAGTCATGTTTGGATCTTTAAGGATAATG 2353
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 2354 ATCAGGGAAAGCACTGATCAATGTAATTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCCC 2427
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 2428 CCAAGCTGGAGTGCAGTGGCACACTCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTCTCAAGCAATTCTCTGG 2501
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 2502 CTTCAGCCTCTCAAGTAGCTGGGACTACAGATGCACACCACCATGTCCAGCTAATTTTTGTATTTTTAGTAGAG 2575
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 2576 ATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCCACGTCAGCCTCCCA 2649
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 2650 AAGTGCTGGGATTACAGATGTGAGCCACCGAGCCCAGCTTGATCAATGTAATTTTAAGATTACCTAAAAATTCC 2723
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 2724 ATTTTGGGATAATATCCCACTTCATCAGAAATATTAGAATGATTTAAGTGTTAGGTCCTTTCCCTTATCTGTAA 2797
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 2798 GTTAATGAATGTATTAATGAGCAGTAAAATGGTTGCAAAAAACCTGAACCTGAACAATCTGAATGTACTCCTTA 2871
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 2872 AAGGTATCTGAGCACCTTTTCAACCTGAATGACTACTCATTTATCTGATAAAGTGATGTAGTTTGGATATTCAA 2945
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 2946 CCCTGCAAACCTCATGCTGAAATTGGATTCCCAGTGTTGGAGGTGGGGCCTAATGGGAGGTGTTTGGATCCCTC 3019
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 3020 ATGAATGGCTTCGTTCCATTGGTGGGGTAATGAGTAAGTTCTCGCTCTATATGTCCCTCCCCCACCCCAGAGCT 3093
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 3094 GGCTGTTAAAACGAGGCTGGCACCTGGCACTTACCCCTACCCCTCAACCCATTCTTGCCCTGTGATCTCTGCTC 3167
Query 1081 -------------------------------------------------------------------------- 1080
Sbjct 3168 ACGTTGCCTCCCTTCATCTTCCTGCATAAGTGGAAGCAGCCTGAAGCCCTCACTGTTTCTTGTACAGCCTGCAG 3241
Query 1081 ------------------------------------- 1080
Sbjct 3242 AGCCGTGAGCCAAATAAAGCTCTTTTCTTTTAAACTA 3278
