Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_02802
Subject:
NR_045999.2
Aligned Length:
3515
Identities:
843
Gaps:
2672

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTTGACGCTGTGGCCCGGAAGTGGAGCGGCTGTCGCAGTGCGGCTCCGGCAGTGGCAGCGGAGGCCTGTGTTTG  74

Query    1  ----------------------ATGGCGAGCGCAACTGCACCTGCAGCCGCAGTCCCCACCCTGGCTTCGCCTT  52
                                  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  CGGCCTTCGGCAAGCGACTGAGATGGCGAGCGCAACTGCACCTGCAGCCGCAGTCCCCACCCTGGCTTCGCCTT  148

Query   53  TGGAGCAGCTCCGGCACTTGGCGGAGGAGCTGCGGTTGCTCCTGCCTCGAGTGCGGGTCGGCGAAGCCCAGGAG  126
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  
Sbjct  149  TGGAGCAGCTCCGGCACTTGGCGGAGGAGCTGCGGTTGCTCCTGCCTCGAGTGCGG------------------  204

Query  127  ACCACCGAGGAGTTTAATCGAGAGATGTTCTGGAGAAGACTCAATGAGGCAGCTGTGACTGTGTCAAGGGAAGC  200
                                                                                      
Sbjct  205  --------------------------------------------------------------------------  204

Query  201  CACGACTCTGACCATAGTCTTCTCTCAGCTTCCACTGCCGTCTCCACAGGAAACCCAGAAGTTCTGTGAACAAG  274
                                                            ||||||||||||||||||||||||||
Sbjct  205  ------------------------------------------------GGAAACCCAGAAGTTCTGTGAACAAG  230

Query  275  TCCATGCTGCCATCAAGGCATTTATTGCAGTGTACTATTTGCTTCCAAAGGATCAGGGGATCACCCTGAGAAAG  348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  
Sbjct  231  TCCATGCTGCCATCAAGGCATTTATTGCAGTGTACTATTTGCTTCCAAAGGATCAG------------------  286

Query  349  CTGGTACGGGGCGCCACCCTGGACATCGTGGATGGCATGGCTCAGCTCATGGAAGTACTTTCCGTCACTCCAAC  422
                                                                                      
Sbjct  287  --------------------------------------------------------------------------  286

Query  423  TCAGAGCCCTGAGAACAATGACCTTATTTCCTACAACAGTGTCTGGGTTGCGTGCCAGCAGATGCCTCAGATAC  496
                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  287  -----GCCCTGAGAACAATGACCTTATTTCCTACAACAGTGTCTGGGTTGCGTGCCAGCAGATGCCTCAGATAC  355

Query  497  CAAGAGATAACAAAGCTGCAGCTCTTTTGATGCTGACCAAGAATGTGGATTTTGTGAAGGATGCACATGAAGAA  570
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  356  CAAGAGATAACAAAGCTGCAGCTCTTTTGATGCTGACCAAGAATGTGGATTTTGTGAAGGATGCACATGAAGAA  429

Query  571  ATGGAGCAGGCTGTGGAAGAATGTGACCCTTACTCTGGCCTCTTGAATGATACTGAGGAGAACAACTCTGACAA  644
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  430  ATGGAGCAGGCTGTGGAAGAATGTGACCCTTACTCTGGCCTCTTGAATGATACTGAGGAGAACAACTCTGACAA  503

Query  645  CCACAATCATGAGGATGATGTGTTGGGGTTTCCCAGCAATCAGGACTTGTATTGGTCAGAGGACGATCAAGAGC  718
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  504  CCACAATCATGAGGATGATGTGTTGGGGTTTCCCAGCAATCAGGACTTGTATTGGTCAGAGGACGATCAAGAGC  577

Query  719  TCATAATCCCATGCCTTGCGCTGGTGAGAGCATCCAAAGCCTGCCTGAAGAAAATTCGGATGTTAGTGGCAGAG  792
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  578  TCATAATCCCATGCCTTGCGCTGGTGAGAGCATCCAAAGCCTGCCTGAAGAAAATTCGGATGTTAGTGGCAGAG  651

Query  793  AATGGGAAGAAGGATCAGGTGGCACAGCTGGATGACATTGTGGATATTTCTGATGAAATCAGCCCTAGTGTGGA  866
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  652  AATGGGAAGAAGGATCAGGTGGCACAGCTGGATGACATTGTGGATATTTCTGATGAAATCAGCCCTAGTGTGGA  725

Query  867  TGATTTGGCTCTGAGCATATATCCACCTATGTGTCACCTGACCGTGCGAATCAATTCTGCGAAACTTGTATCTG  940
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  726  TGATTTGGCTCTGAGCATATATCCACCTATGTGTCACCTGACCGTGCGAATCAATTCTGCGAAACTTGTATCTG  799

Query  941  TTTTAAAGAAGGCACTTGAAATTACAAAAGCAAGTCATGTGACCCCTCAGCCAGAAGATAGTTGGATCCCTTTA  1014
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  800  TTTTAAAGAAGGCACTTGAAATTACAAAAGCAAGTCATGTGACCCCTCAGCCAGAAGATAGTTGGATCCCTTTA  873

Query 1015  CTTATTAATGCCATTGATCATTGCATGAATAGAATCAAGGAGCTCACTCAGAGTGAACTTGAATTA--------  1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct  874  CTTATTAATGCCATTGATCATTGCATGAATAGAATCAAGGAGCTCACTCAGAGTGAACTTGAATTATGACTTTT  947

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct  948  CAGGCTCATTTGTACTCTCTTCCCCTCTCATCGTCATGGTCAGGCTCTGATACCTGCTTTTAAAATGGAGCTAG  1021

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 1022  AATGCTTGCTGGATTGAAAGGGAGTGCCTATCTATATTTAGCAAGAGACACTATTACCAAAGATTGTTGGTTAG  1095

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 1096  GCCAGATTGACACCTATTTATAAACCATATGCGTATATTTTTCTGTGCTATATATGAAAAATAATTGCATGATT  1169

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 1170  TCTCATTCCTGAGTCATTTCTCAGAGATTCCTAGGAAAGCTGCCTTATTCTCTTTTTGCAGTAAAGTATGTTGT  1243

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 1244  TTTCATTGTAAAGATGTTGATGGTCTCAATAAAATGCTAACTTGCCAGTGATTAAATGAGTGCCCTTCCAAAGT  1317

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 1318  TTCTTTTTACCAGAAATACAGTGGATTGAGACTAGAACATTGCTTTCATTTGGGTTTGTAGGTTTAAAAATCTG  1391

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 1392  ATTCTAATCAGAAGTATATTTAGAACAAAACACTTTATTTATAAAAGATGACTCCAAAATTCATCTTAGTATTT  1465

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 1466  CACCATGTTATATATTATTATCAGCAAGTCCTTCTGAATATTATCACAGATTACTCCATGTCTCTAAAATATAT  1539

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 1540  TGGCATTGAGCTCATTTGTTAGGTTTGCCCACCTTATTGAACAGATTTATTTTCCTTATACATACTTGTGTTGT  1613

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 1614  CCTTGGTTACGTGTGTCCCCAAATGTAAATACCAAATTTTTATAAATCAAAAATTTTTTAGTGTGTAAGAGATT  1687

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 1688  TTATGTAATTTTAAGGGCCTTTTCAGTTCATCCTTTTGCAAAACCATCACCACTTAATTATACTTTTGCATCAG  1761

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 1762  TCTAGAAGACTGCATATTGGAAAGCAGTGTAAATCTATAATGATGTATATTCTGGTGAGCTGAATAGGGCATTA  1835

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 1836  TGCATGTCCTACAGGTCTCCGCCACCTCTCATGCCCATCATCTTCCTTTTGTAGGTGTAATTCATAACATATGC  1909

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 1910  CTTTCTGCTGTCTTTAGGTATAATCAGCAACAGCAGTCATTCTTTGAGTGACTAATGTATACTTGGGGTTGGGG  1983

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 1984  TTGAAATTCCTTAAGCCAAATGAGTTTTAGCTTACTGTTTTGAAGTGCCATTTTGTATTGTTAACAAGTGTCAT  2057

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 2058  GAAGGGAAGGAACTAAAATCAAACTGACAGAGTGTCAAGGCAACAAAATAACATAAACAAAATAATAACATTGT  2131

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 2132  ACAACAGTCTAGTTCTTTTATCCTTTCATATAGAGCCTATTTTTTATATACTTTTATATTTCTCTACTGGACCA  2205

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 2206  AATTCATGTTATTAACATCAGACTTTAATTGTGGGATACTTAATGAATATAGAACTCTAATATAAAGACTTACC  2279

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 2280  TCTAGCTGAATTATTCTCTCAGGTCCTGTATTGTATAACTTCGTTCAGTCATGTTTGGATCTTTAAGGATAATG  2353

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 2354  ATCAGGGAAAGCACTGATCAATGTAATTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCCC  2427

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 2428  CCAAGCTGGAGTGCAGTGGCACACTCTCGGCTCACTGCAACCTCCGCCTCCCAGGTTCTCAAGCAATTCTCTGG  2501

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 2502  CTTCAGCCTCTCAAGTAGCTGGGACTACAGATGCACACCACCATGTCCAGCTAATTTTTGTATTTTTAGTAGAG  2575

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 2576  ATGGGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCCACGTCAGCCTCCCA  2649

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 2650  AAGTGCTGGGATTACAGATGTGAGCCACCGAGCCCAGCTTGATCAATGTAATTTTAAGATTACCTAAAAATTCC  2723

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 2724  ATTTTGGGATAATATCCCACTTCATCAGAAATATTAGAATGATTTAAGTGTTAGGTCCTTTCCCTTATCTGTAA  2797

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 2798  GTTAATGAATGTATTAATGAGCAGTAAAATGGTTGCAAAAAACCTGAACCTGAACAATCTGAATGTACTCCTTA  2871

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 2872  AAGGTATCTGAGCACCTTTTCAACCTGAATGACTACTCATTTATCTGATAAAGTGATGTAGTTTGGATATTCAA  2945

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 2946  CCCTGCAAACCTCATGCTGAAATTGGATTCCCAGTGTTGGAGGTGGGGCCTAATGGGAGGTGTTTGGATCCCTC  3019

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 3020  ATGAATGGCTTCGTTCCATTGGTGGGGTAATGAGTAAGTTCTCGCTCTATATGTCCCTCCCCCACCCCAGAGCT  3093

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 3094  GGCTGTTAAAACGAGGCTGGCACCTGGCACTTACCCCTACCCCTCAACCCATTCTTGCCCTGTGATCTCTGCTC  3167

Query 1081  --------------------------------------------------------------------------  1080
                                                                                      
Sbjct 3168  ACGTTGCCTCCCTTCATCTTCCTGCATAAGTGGAAGCAGCCTGAAGCCCTCACTGTTTCTTGTACAGCCTGCAG  3241

Query 1081  -------------------------------------  1080
                                                 
Sbjct 3242  AGCCGTGAGCCAAATAAAGCTCTTTTCTTTTAAACTA  3278

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