Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_03477
- Subject:
- XR_001743499.2
- Aligned Length:
- 3654
- Identities:
- 1147
- Gaps:
- 2460
Alignment
Query 1 ATGCCTTCTGCATCCTGTGATACACTACTGGATGACATCGAAGATATCGTGTCTCAGGAAGATTCAAAACCACA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 AGATAGGCATTTTGTAAGAAAGGATGTTGTCCCGAAGGTACGAAGGCGAAATACCCAAAAATATTTGCAAGAGG 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 AAGAAAACAGTCCACCAAGTGACAGCACTATTCCAGGCATACAGAAAATTTGGATACGAACATGGGGTTGTTCT 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 CATAATAATTCAGATGGAGAATATATGGCTGGACAGCTAGCTGCTTATGGCTATAAAATTACAGAAAATGCATC 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 CGATGCAGATTTATGGCTCCTGAACAGTTGCACTGTAAAAAACCCAGCTGAAGACCACTTTAGAAACTCAATT- 369
|.||||.|.||||
Sbjct 1 ------------------------------------------------------------TTGAAATTGAATTT 14
Query 370 ----AAAAAAGCTCAAGAGGAGAACAAGAAAATCGTACTGGCTGGATGCGTTCCTCAAGCCCAGCCTCGCCAGG 439
||| |.|.|| ||..|||| || |||
Sbjct 15 TGGCAAA---------------------------------GTTTGA----TTTTTCAA----AG-------AGG 40
Query 440 ACTACCTTAAGGGACTGAG----TATCATTGGGGTTCAGCAGATA-GAT-CGTGTGGTAGAAGTTGTGGAGGAG 507
|.|..|||...|| |||| |.|.||||.| |||| .|| |.|.|..|| ||.|
Sbjct 41 ATTTTCTTTGTGG--TGAGACTATTTTATTGAG--------GATATTATCCTTCTTTTA----TTAT------- 93
Query 508 ACAA--TTAAAGGTC----ACT--------CTG-----TGAGACTGC--TGGGTCAGAAAAAGGA---TAATGG 557
||| ||..||||| ||| ||| |.|||.||| |||..||||.|..||| ||
Sbjct 94 -CAAACTTTTAGGTCTTCTACTTCCGTCTCCTGTCATCTCAGATTGCTATGGCGCAGAGATGGGAATCTA---- 162
Query 558 AAGGCGGCTTGGGGGAGCACGATTGGATTTGCCGAAGATT-AGGAAGAATCCACTGATAGAAATCATTTCCATC 630
||.| |||||| ||||.|...||| ||| ||||
Sbjct 163 ---GCTG-TTGGGG--------------TTGCTGTTTATTCAGG---------------GAAA----------- 192
Query 631 AATACCGGGTGTCTCAATGCTTGTACCTACTGCAAAACTAAACACGCCAGAGGAAATTTGGCCAGTTATCCAAT 704
|||..|..||||.||| |..|||.|| |||.|.|| |||
Sbjct 193 AATGGCTTGTGTTTCA----------------------TCTACAGGC-----------TGGTCTGT-----AAT 228
Query 705 TGATGAACTAGTAGATAGAGCCAAACAATCTTTTCAAGAGGGTGTTTGTGAGATATGGTTGACCAGTGAAGACA 778
|| ||| .|||||||||||||||||||||||||||||||||||||
Sbjct 229 TG---------------------------CTT----GGAGGGTGTTTGTGAGATATGGTTGACCAGTGAAGACA 271
Query 779 CGGGGGCTTATGGCAGAGATATTGGCACCAATCTCCCCACACTCCTGTGGAAACTGGTTGAAGTGATTCCTGAG 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 272 CGGGGGCTTATGGCAGAGATATTGGCACCAATCTCCCCACACTCCTGTGGAAACTGGTTGAAGTGATTCCTGAG 345
Query 853 GGAGCAATGCTGAGGCTTGGCATGACAAATCCGCCCTATATTTTAGAGCATCTGGAGGAAATGGCAAAAATCCT 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 GGAGCAATGCTGAGGCTTGGCATGACAAATCCGCCCTATATTTTAGAGCATCTGGAGGAAATGGCAAAAATCCT 419
Query 927 TAATCACCCCAGAGTCTACGCTTTTCTGCACATACCAGTCCAGTCTGCCTCCGACAGCGTACTCATGGAAATGA 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TAATCACCCCAGAGTCTACGCTTTTCTGCACATACCAGTCCAGTCTGCCTCCGACAGCGTACTCATGGAAATGA 493
Query 1001 AAAGAGAATACTGTGTGGCTGACTTCAAAAGAGTAGTGGATTTTCTGAAAGAGAAAGTTCCTGGAATAACTATT 1074
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 AAAGAGAATACTGTGTGGCTGACTTCAAAAGAGTAGTGGATTTTCTGAAAGAGAAAGTTCCTGGAATAACTATT 567
Query 1075 GCTACAGATATTATCTGTGGTTTTCCTGGAGAAACAGATCAGGATTTTCAAGAAACAGTGAAACTTGTTGAAGA 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 GCTACAGATATTATCTGTGGTTTTCCTGGAGAAACAGATCAGGATTTTCAAGAAACAGTGAAACTTGTTGAAGA 641
Query 1149 GTACAAATTCCCAAGCCTGTTTATTAACCAATTTTACCCAAGACCAGGAACTCCTGCTGCAAAAATGGAACAAG 1222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 GTACAAATTCCCAAGCCTGTTTATTAACCAATTTTACCCAAGACCAGGAACTCCTGCTGCAAAAATGGAACAAG 715
Query 1223 TTCCAGCACAAGTGAAAAAGCAAAGGACAAAAGATCTTTCTCGGGTGTTTCATTCTTACAGTCCATATGATCAC 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 TTCCAGCACAAGTGAAAAAGCAAAGGACAAAAGATCTTTCTCGGGTGTTTCATTCTTACAGTCCATATGATCAC 789
Query 1297 AAGATTGGTGAAAGACAACAAGTGTTAGTAACAGAAGAATCTTTTGATTCCAAGTTTTATGTTGCACACAATCA 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 AAGATTGGTGAAAGACAACAAGTGTTAGTAACAGAAGAATCTTTTGATTCCAAGTTTTATGTTGCACACAATCA 863
Query 1371 ATTCTATGAGC--------------------------------------------------------------- 1381
|||||||||||
Sbjct 864 ATTCTATGAGCAGATAAGAGGTGAAAATGTTTGCTATGGATCATGGCTGGAATTAGAGCTTGAGAAGATGCTGA 937
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 938 AGGCCAAGGTGGACAAGTCGGATGAGGGATGGGCAGAGGAAGCAGGCTGCCTGTGTCAGAAGGCAGGAAAGCAG 1011
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 1012 GAGCTGAAGAGGCCCCCAGCATTGACATTCCCCAGGGAATCATCTCAGACTGGGCAGTGCGTCCCCAGGAAACA 1085
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 1086 GGGGAGCTTTTCAAAGCCCAGACTAAACGTGCTCTGTTCAGTACCGGTGGAGACTGCAGTTGAGGAAGGGCTCC 1159
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 1160 CAGCACTCCATGTCTGGCCTGCATCGCTTCCCCATTTCCCCATCTCATTAATATACCCCAGAGGGCCATTTTCC 1233
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 1234 TATTCAGGCCAACCTTCTGCTCAGCCCTGGGGAGGAGCTTGATTGCATTTTGGTTGCCTCTTCTCTCTCCTTTC 1307
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 1308 TCTTGCCATCTGGGTTTTGCCTCAGCAGGGAACTTTTTTCCCTTCATTTTAAAGGCAGTGGCATGCCTCGTTAG 1381
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 1382 CTGCTTCCTCCAATTTAAAGCAGTCGGGCTTTTTCCAATTATTAAAACTGGAGGAGGGGAAAACACTGAGCCCT 1455
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 1456 TCATTCAGATCAAGGCAGCAGATCAAGGAGGGTTATTTTTCCCCAGAATAGTACCAAATCTCCCAGGGTTAGTT 1529
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 1530 TGGTCTAGAGATTTTCTTATTTTATAAAAACTGATTTAAATGGGCTTTTTATATCCTAACACTAAAGCTCTTTT 1603
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 1604 AGTTCTTTTTGCCTGCCCTAAGTAATTCACCACCCAGGTGACCTTTTTCTTCTACTTTGATGAAGCAGTGTACT 1677
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 1678 CAGTGGTCATAAAAATCAAACTCAGACCAAGATTCAATTTTGCCTTTCAGAGAGATTGGCTGTGGAACTCCTGG 1751
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 1752 CTCTCATCTGACTTTTCTGTCTCTATAACTAAGCATATCAAAGATTTTCTAGGAATTATTTTTCTAAATAAGAT 1825
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 1826 GAGTTCCAGAGATGAAGATTGTATCTAGATATCCAAGTATTACTGGATTAGAACTGGTCTATTTATTTTGGATT 1899
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 1900 CTAACTTGAAAAGACTGGCAAGTCGCTGCAGTGCTAAAATAGAAGTGTAAGGGAGACATCACACACACAAGCTA 1973
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 1974 CCTGTGGGTCCCAAAGGAAGGGAAACGTTTGCTTGAAGTAAACAAGTACTTTTATCAGGAATCTCTAGTGGAAA 2047
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 2048 GAGACCACCTGACAGTTTCCTGTGAACAAGCCAAAGTACCCTTCAGAGGACTGGTTCTAGATGGAGGTAGATTC 2121
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 2122 CCAGGACTGACAAACACATGCCTTTTCTAACAGAGCAAGGGAAATGAACGGCAGCTGTTAGTTTCAGGAGTCAT 2195
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 2196 TTAGCTCCAAACAGCAGTGTACAGTGTTATTGGAAGGTTCTTTTAAATGTACCTCCTTCTCCCTCAAAACACAG 2269
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 2270 CACACACATGCACGGACACAAACACGCAGGCCTGTTTGAAGTGTCTTTTCAAACCATTACTCTGACAGCTCACT 2343
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 2344 TGGAAAGTATTAAAAGTATAAGGCTTTCATCAGTATTGTCTCGGTTTTCCTCATTGCATGGAATAGCCAAAAGC 2417
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 2418 AAGATATCAAAGGCCTGTCCAGAAGTGGCTGGCTGATTGCTGGGGGATTTCCCAGGTCTGCCTTCCACGTGCCT 2491
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 2492 CAGGACATCAGGCACATCCTGCACTGGAAAAGCACTGCCCAGGGGCCCAGGAGCCCCTCCCAGGAGTGCCTTTC 2565
Query 1382 -------------------------------------------------------------------------- 1381
Sbjct 2566 CTTCCTGCAGGCTCTGCAGACCCTTGAGCAGCTAGAAGATAGAGTCCACTTTGTAGGGGATCCCAGAACAGAAA 2639
Query 1382 -------------------------------------AGGTTTTAGTGCCAAAGAACCCTGCGTTCATGGGGAA 1418
|||||||||||||||||||||||||||||||||||||
Sbjct 2640 AATGACATTGAGGGACAATGAGGAAACCTGGATAATTAGGTTTTAGTGCCAAAGAACCCTGCGTTCATGGGGAA 2713
Query 1419 GATGGTTGAAGTGGACATCTATGAATCAGGCAAACATTTTATGAAAGGGCAGCCAGTATCTGATGCCAAAGTGT 1492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2714 GATGGTTGAAGTGGACATCTATGAATCAGGCAAACATTTTATGAAAGGGCAGCCAGTATCTGATGCCAAAGTGT 2787
Query 1493 ACACGCCCTCCATCAGCAAACCGCTAGCAAAGGGAGAAGTCTCGGGTTTGACAAAGGACTTCAGAAATGGGCTT 1566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2788 ACACGCCCTCCATCAGCAAACCGCTAGCAAAGGGAGAAGTCTCGGGTTTGACAAAGGACTTCAGAAATGGGCTT 2861
Query 1567 GGGAACCAGCTGAGTTCAGGATCCCACACCTCTGCTGCATCTCAGTGTGACTCAGCGAGTTCCAGAATGGTGCT 1640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2862 GGGAACCAGCTGAGTTCAGGATCCCACACCTCTGCTGCATCTCAGTGTGACTCAGCGAGTTCCAGAATGGTGCT 2935
Query 1641 GCCCATGCCAAGGCTACATCAAGACTGTGCGCTGAGGATGTCCGTGGGCTTGGCTCTGCTGGGTCTTCTTTTTG 1714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2936 GCCCATGCCAAGGCTACATCAAGACTGTGCGCTGAGGATGTCCGTGGGCTTGGCTCTGCTGGGTCTTCTTTTTG 3009
Query 1715 CTTTTTTTGTCAAGGTCTATAAT--------------------------------------------------- 1737
|||||||||||||||||||||||
Sbjct 3010 CTTTTTTTGTCAAGGTCTATAATTAGAATACAACTAATGGAAACATCTATAAAGAAGAATACATTTCTAATTAA 3083
Query 1738 ---------------------------- 1737
Sbjct 3084 AATCTTCAATGAACAGGAAAGCGACATC 3111
