Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_03477
- Subject:
- XR_926267.2
- Aligned Length:
- 3723
- Identities:
- 1726
- Gaps:
- 1987
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAATAAACGTGGCGGGACGTATGTGTCATGGCGCTCTCCATCTAAAGTCTGTGCAGCTTCCGGAGAGTGGCGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TTGATTTTCTCACTTTGGACTGGTTTTTACTTCCCGACTTCTGGACTCATCTTTCAAGAGGACTTTAGACTAAT 148
Query 1 -------------------ATGCCTTCTGCATCCTGTGATACACTACTGGATGACATCGAAGATATCGTGTCTC 55
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 TGCAGATAATTAAGAGAATATGCCTTCTGCATCCTGTGATACACTACTGGATGACATCGAAGATATCGTGTCTC 222
Query 56 AGGAAGATTCAAAACCACAAGATAGGCATTTTGTAAGAAAGGATGTTGTCCCGAAGGTACGAAGGCGAAATACC 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AGGAAGATTCAAAACCACAAGATAGGCATTTTGTAAGAAAGGATGTTGTCCCGAAGGTACGAAGGCGAAATACC 296
Query 130 CAAAAATATTTGCAAGAGGAAGAAAACAGTCCACCAAGTGACAGCACTATTCCAGGCATACAGAAAATTTGGAT 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CAAAAATATTTGCAAGAGGAAGAAAACAGTCCACCAAGTGACAGCACTATTCCAGGCATACAGAAAATTTGGAT 370
Query 204 ACGAACATGGGGTTGTTCTCATAATAATTCAGATGGAGAATATATGGCTGGACAGCTAGCTGCTTATGGCTATA 277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ACGAACATGGGGTTGTTCTCATAATAATTCAGATGGAGAATATATGGCTGGACAGCTAGCTGCTTATGGCTATA 444
Query 278 AAATTACAGAAAATGCATCCGATGCAGATTTATGGCTCCTGAACAGTTGCACTGTAAAAAACCCAGCTGAAGAC 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 AAATTACAGAAAATGCATCCGATGCAGATTTATGGCTCCTGAACAGTTGCACTGTAAAAAACCCAGCTGAAGAC 518
Query 352 CACTTTAGAAACTCAATTAAAAAAGCTCAAGAGGAGAACAAGAAAATCGTACTGGCTGGATGCGTTCCTCAAGC 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CACTTTAGAAACTCAATTAAAAAAGCTCAAGAGGAGAACAAGAAAATCGTACTGGCTGGATGCGTTCCTCAAGC 592
Query 426 CCAGCCTCGCCAGGACTACCTTAAGGGACTGAGTATCATTGGGGTTCAGCAGATAGATCGTGTGGTAGAAGTTG 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CCAGCCTCGCCAGGACTACCTTAAGGGACTGAGTATCATTGGGGTTCAGCAGATAGATCGTGTGGTAGAAGTTG 666
Query 500 TGGAGGAGACAATTAAAGGTCACTCTGTGAGACTGCTGGGTCAGAAAAAGGATAATGGAAGGCGGCTTGGGGGA 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TGGAGGAGACAATTAAAGGTCACTCTGTGAGACTGCTGGGTCAGAAAAAGGATAATGGAAGGCGGCTTGGGGGA 740
Query 574 GCACGATTGGATTTGCCGAAGATTAGGAAGAATCCACTGATAGAAATCATTTCCATCAATACCGGGTGTCTCAA 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GCACGATTGGATTTGCCGAAGATTAGGAAGAATCCACTGATAGAAATCATTTCCATCAATACCGGGTGTCTCAA 814
Query 648 TGCTTGTACCTACTGCAAAACTAAACACGCCAGAGGAAATTTGGCCAGTTATCCAATTGATGAACTAGTAGATA 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TGCTTGTACCTACTGCAAAACTAAACACGCCAGAGGAAATTTGGCCAGTTATCCAATTGATGAACTAGTAGATA 888
Query 722 GAGCCAAACAATCTTTTCAAGAGGGTGTTTGTGAGATATGGTTGACCAGTGAAGACACGGGGGCTTATGGCAGA 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAGCCAAACAATCTTTTCAAGAGGGTGTTTGTGAGATATGGTTGACCAGTGAAGACACGGGGGCTTATGGCAGA 962
Query 796 GATATTGGCACCAATCTCCCCACACTCCTGTGGAAACTGGTTGAAGTGATTCCTGAGGGAGCAATGCTGAGGCT 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GATATTGGCACCAATCTCCCCACACTCCTGTGGAAACTGGTTGAAGTGATTCCTGAGGGAGCAATGCTGAGGCT 1036
Query 870 TGGCATGACAAATCCGCCCTATATTTTAGAGCATCTGGAGGAAATGGCAAAAATCCTTAATCACCCCAGAGTCT 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TGGCATGACAAATCCGCCCTATATTTTAGAGCATCTGGAGGAAATGGCAAAAATCCTTAATCACCCCAGAGTCT 1110
Query 944 ACGCTTTTCTGCACATACCAGTCCAGTCTGCCTCCGACAGCGTACTCATGGAAATGAAAAGAGAATACTGTGTG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 ACGCTTTTCTGCACATACCAGTCCAGTCTGCCTCCGACAGCGTACTCATGGAAATGAAAAGAGAATACTGTGTG 1184
Query 1018 GCTGACTTCAAAAGAGTAGTGGATTTTCTGAAAGAGAAAGTTCCTGGAATAACTATTGCTACAGATATTATCTG 1091
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GCTGACTTCAAAAGAGTAGTGGATTTTCTGAAAGAGAAAGTTCCTGGAATAACTATTGCTACAGATATTATCTG 1258
Query 1092 TGGTTTTCCTGGAGAAACAGATCAGGATTTTCAAGAAACAGTGAAACTTGTTGAAGAGTACAAATTCCCAAGCC 1165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGGTTTTCCTGGAGAAACAGATCAGGATTTTCAAGAAACAGTGAAACTTGTTGAAGAGTACAAATTCCCAAGCC 1332
Query 1166 TGTTTATTAACCAATTTTACCCAAGACCAGGAACTCCTGCTGCAAAAATGGAACAAGTTCCAGCACAAGTGA-- 1237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 TGTTTATTAACCAATTTTACCCAAGACCAGGAACTCCTGCTGCAAAAATGGAACAAGTTCCAGCACAAGTGATT 1406
Query 1238 -------------------------------------------------------------------------- 1237
Sbjct 1407 GGTGAAAGACAACAAGTGTTAGTAACAGAAGAATCTTTTGATTCCAAGTTTTATGTTGCACACAATCAATTCTA 1480
Query 1238 -----------------AAAA----------------------------------------------------- 1241
||||
Sbjct 1481 TGAGCAGATAAGAGGTGAAAATGTTTGCTATGGATCATGGCTGGAATTAGAGCTTGAGAAGATGCTGAAGGCCA 1554
Query 1242 --------------------------GCAAAGGA----------------CAAAAG------------------ 1255
|||.|||| ||.|||
Sbjct 1555 AGGTGGACAAGTCGGATGAGGGATGGGCAGAGGAAGCAGGCTGCCTGTGTCAGAAGGCAGGAAAGCAGGAGCTG 1628
Query 1256 -----------------------------------ATCT----------------------------------- 1259
||||
Sbjct 1629 AAGAGGCCCCCAGCATTGACATTCCCCAGGGAATCATCTCAGACTGGGCAGTGCGTCCCCAGGAAACAGGGGAG 1702
Query 1260 -------------------------------------------------------------------------- 1259
Sbjct 1703 CTTTTCAAAGCCCAGACTAAACGTGCTCTGTTCAGTACCGGTGGAGACTGCAGTTGAGGAAGGGCTCCCAGCAC 1776
Query 1260 -------------------------------------------------------------------------- 1259
Sbjct 1777 TCCATGTCTGGCCTGCATCGCTTCCCCATTTCCCCATCTCATTAATATACCCCAGAGGGCCATTTTCCTATTCA 1850
Query 1260 ------------------------------------------------------TTCTC--------------- 1264
|||||
Sbjct 1851 GGCCAACCTTCTGCTCAGCCCTGGGGAGGAGCTTGATTGCATTTTGGTTGCCTCTTCTCTCTCCTTTCTCTTGC 1924
Query 1265 -----GGGTGT-------------------------TTCATTCTTACAG------------------------- 1283
||||.| |||||| |||.||
Sbjct 1925 CATCTGGGTTTTGCCTCAGCAGGGAACTTTTTTCCCTTCATT-TTAAAGGCAGTGGCATGCCTCGTTAGCTGCT 1997
Query 1284 ---TCCA---------------------------TAT------------------------------------- 1290
|||| |||
Sbjct 1998 TCCTCCAATTTAAAGCAGTCGGGCTTTTTCCAATTATTAAAACTGGAGGAGGGGAAAACACTGAGCCCTTCATT 2071
Query 1291 --GATCA-----------CAAG-------ATT------------------------------------------ 1302
||||| |||| |||
Sbjct 2072 CAGATCAAGGCAGCAGATCAAGGAGGGTTATTTTTCCCCAGAATAGTACCAAATCTCCCAGGGTTAGTTTGGTC 2145
Query 1303 -------------------------------------------------------------------------- 1302
Sbjct 2146 TAGAGATTTTCTTATTTTATAAAAACTGATTTAAATGGGCTTTTTATATCCTAACACTAAAGCTCTTTTAGTTC 2219
Query 1303 -------------------------------GGTGA-------------------------------------- 1307
|||||
Sbjct 2220 TTTTTGCCTGCCCTAAGTAATTCACCACCCAGGTGACCTTTTTCTTCTACTTTGATGAAGCAGTGTACTCAGTG 2293
Query 1308 -----------------------AAGA--CAA------------------------------------------ 1314
|||| |||
Sbjct 2294 GTCATAAAAATCAAACTCAGACCAAGATTCAATTTTGCCTTTCAGAGAGATTGGCTGTGGAACTCCTGGCTCTC 2367
Query 1315 -------------------------------------------------------------------------- 1314
Sbjct 2368 ATCTGACTTTTCTGTCTCTATAACTAAGCATATCAAAGATTTTCTAGGAATTATTTTTCTAAATAAGATGAGTT 2441
Query 1315 ----------------------------CAAGTGTTAGT----------------------------------- 1325
|||||.|||.|
Sbjct 2442 CCAGAGATGAAGATTGTATCTAGATATCCAAGTATTACTGGATTAGAACTGGTCTATTTATTTTGGATTCTAAC 2515
Query 1326 --------------------------------AACAGAA----------------------------------- 1332
||.||||
Sbjct 2516 TTGAAAAGACTGGCAAGTCGCTGCAGTGCTAAAATAGAAGTGTAAGGGAGACATCACACACACAAGCTACCTGT 2589
Query 1333 -----------------------------------------------------GAATCT--------------- 1338
||||||
Sbjct 2590 GGGTCCCAAAGGAAGGGAAACGTTTGCTTGAAGTAAACAAGTACTTTTATCAGGAATCTCTAGTGGAAAGAGAC 2663
Query 1339 ----------TTT---------------------------------------------------GATTCCAAG- 1350
||| ||||||.||
Sbjct 2664 CACCTGACAGTTTCCTGTGAACAAGCCAAAGTACCCTTCAGAGGACTGGTTCTAGATGGAGGTAGATTCCCAGG 2737
Query 1351 -----------------TTTT----------------------------------------------------- 1354
||||
Sbjct 2738 ACTGACAAACACATGCCTTTTCTAACAGAGCAAGGGAAATGAACGGCAGCTGTTAGTTTCAGGAGTCATTTAGC 2811
Query 1355 -----------------------------------------ATGT----------------------TGCACAC 1365
|||| .||||||
Sbjct 2812 TCCAAACAGCAGTGTACAGTGTTATTGGAAGGTTCTTTTAAATGTACCTCCTTCTCCCTCAAAACACAGCACAC 2885
Query 1366 A------------------------------------------------------------------------- 1366
|
Sbjct 2886 ACATGCACGGACACAAACACGCAGGCCTGTTTGAAGTGTCTTTTCAAACCATTACTCTGACAGCTCACTTGGAA 2959
Query 1367 -------------------------------------------------------------------------- 1366
Sbjct 2960 AGTATTAAAAGTATAAGGCTTTCATCAGTATTGTCTCGGTTTTCCTCATTGCATGGAATAGCCAAAAGCAAGAT 3033
Query 1367 ATCAA----------------------------------------------------TTCTA------------ 1376
||||| |||.|
Sbjct 3034 ATCAAAGGCCTGTCCAGAAGTGGCTGGCTGATTGCTGGGGGATTTCCCAGGTCTGCCTTCCACGTGCCTCAGGA 3107
Query 1377 -------------------------------------------------------------------------- 1376
Sbjct 3108 CATCAGGCACATCCTGCACTGGAAAAGCACTGCCCAGGGGCCCAGGAGCCCCTCCCAGGAGTGCCTTTCCTTCC 3181
Query 1377 -------------------TGAGC-------------------------------------------------- 1381
|||||
Sbjct 3182 TGCAGGCTCTGCAGACCCTTGAGCAGCTAGAAGATAGAGTCCACTTTGTAGGGGATCCCAGAACAGAAAAATGA 3255
Query 1382 --------------------------------AGGTTTTAGTGCCAAAGAACCCTGCGTTCATGGGGAAGATGG 1423
||||||||||||||||||||||||||||||||||||||||||
Sbjct 3256 CATTGAGGGACAATGAGGAAACCTGGATAATTAGGTTTTAGTGCCAAAGAACCCTGCGTTCATGGGGAAGATGG 3329
Query 1424 TTGAAGTGGACATCTATGAATCAGGCAAACATTTTATGAAAGGGCAGCCAGTATCTGATGCCAAAGTGTACACG 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3330 TTGAAGTGGACATCTATGAATCAGGCAAACATTTTATGAAAGGGCAGCCAGTATCTGATGCCAAAGTGTACACG 3403
Query 1498 CCCTCCATCAGCAAACCGCTAGCAAAGGGAGAAGTCTCGGGTTTGACAAAGGACTTCAGAAATGGGCTTGGGAA 1571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3404 CCCTCCATCAGCAAACCGCTAGCAAAGGGAGAAGTCTCGGGTTTGACAAAGGACTTCAGAAATGGGCTTGGGAA 3477
Query 1572 CCAGCTGAGTTCAGGATCCCACACCTCTGCTGCATCTCAGTGTGACTCAGCGAGTTCCAGAATGGTGCTGCCCA 1645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3478 CCAGCTGAGTTCAGGATCCCACACCTCTGCTGCATCTCAGTGTGACTCAGCGAGTTCCAGAATGGTGCTGCCCA 3551
Query 1646 TGCCAAGGCTACATCAAGACTGTGCGCTGAGGATGTCCGTGGGCTTGGCTCTGCTGGGTCTTCTTTTTGCTTTT 1719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3552 TGCCAAGGCTACATCAAGACTGTGCGCTGAGGATGTCCGTGGGCTTGGCTCTGCTGGGTCTTCTTTTTGCTTTT 3625
Query 1720 TTTGTCAAGGTCTATAAT-------------------------------------------------------- 1737
||||||||||||||||||
Sbjct 3626 TTTGTCAAGGTCTATAATTAGAATACAACTAATGGAAACATCTATAAAGAAGAATACATTTCTAATTAAAATCT 3699
Query 1738 ----------------------- 1737
Sbjct 3700 TCAATGAACAGGAAAGCGACATC 3722