Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_03523
Subject:
NM_001159967.1
Aligned Length:
1771
Identities:
1486
Gaps:
101

Alignment

Query    1  ATGGACCTAATGAACGGGCAGGCAAGCAGTGTCAATATTGCAGCTACTGCTTCTGAGAAAAGTAGCAGCTCTGA  74
            ||||||||||||||||||||||||||||||||.|.|||.|||||.||||.|||.|||||.||||||||||||||
Sbjct    1  ATGGACCTAATGAACGGGCAGGCAAGCAGTGTTACTATCGCAGCCACTGTTTCCGAGAAGAGTAGCAGCTCTGA  74

Query   75  ATCCTTAAGTGACAAAGGCTCTGAATTGAAGAAAAGCTTTGATGCTGTGGTATTCGATGTTCTTAAGGTTACAC  148
            .||..||||.||.||.|||||||||||||||||||||||||||||||||||.||.|||||||||||||||||.|
Sbjct   75  GTCACTAAGCGAGAAGGGCTCTGAATTGAAGAAAAGCTTTGATGCTGTGGTGTTTGATGTTCTTAAGGTTACGC  148

Query  149  CAGAAGAATATGCGGGTCAGATAACATTAATGGATGTTCCAGTATTTAAAGCTATTCAACCAGATGAGCTTTCA  222
            ||||||||||.|||||||||||||||.||||||||||||||||.||||||||||||||.||||||||.||||||
Sbjct  149  CAGAAGAATACGCGGGTCAGATAACACTAATGGATGTTCCAGTGTTTAAAGCTATTCAGCCAGATGAACTTTCA  222

Query  223  AGTTGTGGATGGAATAAAAAAGAAAAATATAGTTCTGCACCAAATGCAGTTGCCTTCACAAGAAGATTCAATCA  296
            |||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||.|||||
Sbjct  223  AGTTGTGGATGGAATAAAAAAGAAAAATATAGTTCTGCACCAAATGCAGTTGCTTTCACAAGAAGATTTAATCA  296

Query  297  TGTAAGCTTTTGGGTTGTTAGAGAGATTCTTCATGCTCAAACATTAAAAATTAGAGCAGAAGTTTTGAGCCACT  370
            .|||||||||||||||||.|||||||||||.||||||||||||.|.|||||.||||||||||||||||||||||
Sbjct  297  CGTAAGCTTTTGGGTTGTAAGAGAGATTCTCCATGCTCAAACACTGAAAATAAGAGCAGAAGTTTTGAGCCACT  370

Query  371  ATATTAAAACTGCTAAGAAACTGTATGAGCTGAATAACCTTCATGCACTTATGGCAGTGGTTTCTGGCCTACAG  444
            |||||||.||||||||||||||.|||||.||.||.||||||||.|||||||||||.||||||||||||.|||||
Sbjct  371  ATATTAAGACTGCTAAGAAACTATATGAACTTAACAACCTTCACGCACTTATGGCTGTGGTTTCTGGCTTACAG  444

Query  445  AGTGCCCCAATTTTCAGGTTGACTAAAACATGGGCGTTATTAAGTCGAAAAGACAAAACTACCTTTGAAAAATT  518
            |||||.||.||||||.||||||||||.||.||||||||||||||||||||||||||||||||||||||||||.|
Sbjct  445  AGTGCGCCGATTTTCCGGTTGACTAAGACGTGGGCGTTATTAAGTCGAAAAGACAAAACTACCTTTGAAAAACT  518

Query  519  AGAATATGTAATGAGTAAAGAAGATAACTACAAAAGACTCAGAGACTATATAAGTAGCTTAAAGATGACACCTT  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||.||||
Sbjct  519  AGAATATGTAATGAGTAAAGAAGATAACTACAAAAGACTCAGAGACTATATAAGCAGCTTAAAGATGACTCCTT  592

Query  593  GCATTCCCTATTTAGGTATCTATTTGTCAGATTTAACATACATCGATTCAGCATACCCATCAACTGGCAGCATT  666
            ||||||||||||||||.|||||||||||.||.||.||.|||||.||.||.||.||||||||.||.|||||||||
Sbjct  593  GCATTCCCTATTTAGGCATCTATTTGTCTGACTTGACCTACATTGACTCCGCGTACCCATCCACCGGCAGCATT  666

Query  667  CTAGAAAATGAGCAAAGATCAAATTTAATGAATAATATCCTTCGAATAATTTCTGATTTACAGCAGTCTTGTGA  740
            ||||||||||||||||||||||||.|.|||||.||.||.||||||||||||||||||||.||||||||.|||||
Sbjct  667  CTAGAAAATGAGCAAAGATCAAATCTGATGAACAACATTCTTCGAATAATTTCTGATTTGCAGCAGTCCTGTGA  740

Query  741  ATATGATATTCCCATGTTGCCTCATGTCCAAAAATATCTCAACTCTGTTCAGTATATAGAAGAACTACAAAAAT  814
            |||||||||||||||.||||||||||||||||||||.||.||||||||||||||||||||||||||||||||.|
Sbjct  741  ATATGATATTCCCATATTGCCTCATGTCCAAAAATACCTGAACTCTGTTCAGTATATAGAAGAACTACAAAAGT  814

Query  815  TTGTGGAAGACGATAATTACAAGCTTTCATTAAAGATAGAACCAGGGACAAGCACCCCACGTTCTGCTGCTTCC  888
            |||||||||||||||||||||||||.||.|||||||||||||||||..||||.||.|||||.||.|||||.|||
Sbjct  815  TTGTGGAAGACGATAATTACAAGCTCTCCTTAAAGATAGAACCAGGAGCAAGTACTCCACGCTCGGCTGCCTCC  888

Query  889  AGAGAAGATTTAGTAGGTCCTGAAGTAGGAGCGTCTCCACA--GAGTGGACGAAAA--AGT-------------  945
            ||.||.||..|||.|||||||||..||||.||.||.||.||  ||| |||.|||.|  |||             
Sbjct  889  AGGGAGGACCTAGCAGGTCCTGACATAGGCGCCTCACCCCAGGGAG-GGAGGAAGAGTAGTGCTGCTGCTGCTG  961

Query  946  -----GTGGCAGCTGAAGGAGCCTTGCTCCCACAGACACCGCCATCCCCTCGGAATCTGATTCCACATGGACAT  1014
                 |.|||.||.||.||||||||.||.||||||||.||.||.|||||||||||.||.||||||||.|||||.
Sbjct  962  CCGCCGCGGCTGCCGAGGGAGCCTTACTGCCACAGACGCCACCTTCCCCTCGGAACCTCATTCCACACGGACAC  1035

Query 1015  AGGAAGTGCCATAGTTTGGGTTATAATTTCATTCATAAAATGAACACAGCAGAATTTAAGAGTGCAACGTTTCC  1088
            |||||||||||.||..|||||||.||||||||||||||.||||||||||||||.||||||||.||||||||.||
Sbjct 1036  AGGAAGTGCCACAGCCTGGGTTACAATTTCATTCATAAGATGAACACAGCAGAGTTTAAGAGCGCAACGTTCCC  1109

Query 1089  AAATGCAGGACCAAGACATCTGTTAGATGATAGCGTCATGGAGCCCCATGCGCCATCTCGAGGCCAAGCTGAAA  1162
            |||.|||||.|||.|.||.|||.|.||||||||.|||||||||||.||.||.||.||.||||||||.|||||.|
Sbjct 1110  AAACGCAGGGCCACGGCACCTGCTGGATGATAGTGTCATGGAGCCGCACGCACCGTCGCGAGGCCAGGCTGAGA  1183

Query 1163  GTTCTACTCTTTCTAGTGGAATATCAATAGGTAGCAGCGATGGTTCTGAACTAAGTGAAGAGACCTCATGGCCT  1236
            |.|||||.|||||.|||||||||||.|||||.|||||.|||||||||||||||||.|||||||||||||||||.
Sbjct 1184  GCTCTACACTTTCCAGTGGAATATCCATAGGGAGCAGTGATGGTTCTGAACTAAGCGAAGAGACCTCATGGCCG  1257

Query 1237  GCTTTTGAAAGGAACAGATTATACCATTCTCTCGGCCCGGTGACAAGAGTGGCACGAAATGGCTATCGAAGTCA  1310
            |||||||||                                                                 
Sbjct 1258  GCTTTTGAA-----------------------------------------------------------------  1266

Query 1311  CATGAAGGCCAGCAGTTCTGCAGAATCAGAAGATTTGGCAGTACATTTATATCCAGGAGCTGTTACTATTCAAG  1384
                         ||.|||||.||.||.|||||||||||.||.|||.|.||.||.|||||||||||||||||||
Sbjct 1267  -------------AGCTCTGCGGAGTCGGAAGATTTGGCGGTGCATCTGTACCCCGGAGCTGTTACTATTCAAG  1327

Query 1385  GTGTTCTCAGGAGAAAAACTTTGTTAAAAGAAGGCAAAAAGCCTACAGTAGCATCTTGGACAAAATATTGGGCA  1458
            ||||.|||.||||.|||||.|||.|||||||||||||.||.||.||||||||||||||||||||.|||||||||
Sbjct 1328  GTGTGCTCCGGAGGAAAACCTTGCTAAAAGAAGGCAAGAAACCCACAGTAGCATCTTGGACAAAGTATTGGGCA  1401

Query 1459  GCTTTGTGTGGGACACAGCTTTTTTACTATGCTGCCAAATCTCTAAAGGCTACCGAAAGAAAACATTTCAAATC  1532
            ||.||||||||.||||||||||||||||||||.|||||||||||.||||||||.||||||||.|||||||||||
Sbjct 1402  GCCTTGTGTGGAACACAGCTTTTTTACTATGCCGCCAAATCTCTGAAGGCTACAGAAAGAAAGCATTTCAAATC  1475

Query 1533  AACATCCAATAAGAACGTATCTGTGATAGGATGGATGGTGATGATGGCTGATGACCCTGAACATCCTGATCTCT  1606
            |||.||.||||||||.||.||||||.|.||.||||||||||||||||||||.|||||.||.|||||.||.||||
Sbjct 1476  AACGTCAAATAAGAATGTGTCTGTGGTGGGCTGGATGGTGATGATGGCTGACGACCCAGAGCATCCAGACCTCT  1549

Query 1607  TCCTGCTGACTGACTCTGAGAAAGGAAATTCGTACAAGTTTCAAGCTGGCAATAGAATGAATGCAATGTTATGG  1680
            |.||||||||||||||.||||||||||||||.|||||||||||||||||||..||.||||||||||||.|.|||
Sbjct 1550  TTCTGCTGACTGACTCCGAGAAAGGAAATTCATACAAGTTTCAAGCTGGCAGCAGGATGAATGCAATGCTGTGG  1623

Query 1681  TTTAAGCATTTGAGTGCAGCCTGCCAAAGTAACAAACAACAGGTTCCTACAAACTTGATGACTTTTGAG  1749
            |||||.||.|||||.||.||||||||.||||||||.|||||||||||||||||||||||||||||||||
Sbjct 1624  TTTAAACACTTGAGCGCGGCCTGCCAGAGTAACAAGCAACAGGTTCCTACAAACTTGATGACTTTTGAG  1692

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