Nucleotide Global Alignment

Description

Query:
ccsbBroadEn_03523
Subject:
XM_017312931.1
Aligned Length:
1771
Identities:
1101
Gaps:
521

Alignment

Query    1  ATGGACCTAATGAACGGGCAGGCAAGCAGTGTCAATATTGCAGCTACTGCTTCTGAGAAAAGTAGCAGCTCTGA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  ATCCTTAAGTGACAAAGGCTCTGAATTGAAGAAAAGCTTTGATGCTGTGGTATTCGATGTTCTTAAGGTTACAC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CAGAAGAATATGCGGGTCAGATAACATTAATGGATGTTCCAGTATTTAAAGCTATTCAACCAGATGAGCTTTCA  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  AGTTGTGGATGGAATAAAAAAGAAAAATATAGTTCTGCACCAAATGCAGTTGCCTTCACAAGAAGATTCAATCA  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  TGTAAGCTTTTGGGTTGTTAGAGAGATTCTTCATGCTCAAACATTAAAAATTAGAGCAGAAGTTTTGAGCCACT  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  ATATTAAAACTGCTAAGAAACTGTATGAGCTGAATAACCTTCATGCACTTATGGCAGTGGTTTCTGGCCTACAG  444
                                                              |||||.||||||||||||.|||||
Sbjct    1  --------------------------------------------------ATGGCTGTGGTTTCTGGCTTACAG  24

Query  445  AGTGCCCCAATTTTCAGGTTGACTAAAACATGGGCGTTATTAAGTCGAAAAGACAAAACTACCTTTGAAAAATT  518
            |||||.||.||||||.||||||||||.||.||||||||||||||||||||||||||||||||||||||||||.|
Sbjct   25  AGTGCGCCGATTTTCCGGTTGACTAAGACGTGGGCGTTATTAAGTCGAAAAGACAAAACTACCTTTGAAAAACT  98

Query  519  AGAATATGTAATGAGTAAAGAAGATAACTACAAAAGACTCAGAGACTATATAAGTAGCTTAAAGATGACACCTT  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||.||||
Sbjct   99  AGAATATGTAATGAGTAAAGAAGATAACTACAAAAGACTCAGAGACTATATAAGCAGCTTAAAGATGACTCCTT  172

Query  593  GCATTCCCTATTTAGGTATCTATTTGTCAGATTTAACATACATCGATTCAGCATACCCATCAACTGGCAGCATT  666
            ||||||||||||||||.|||||||||||.||.||.||.|||||.||.||.||.||||||||.||.|||||||||
Sbjct  173  GCATTCCCTATTTAGGCATCTATTTGTCTGACTTGACCTACATTGACTCCGCGTACCCATCCACCGGCAGCATT  246

Query  667  CTAGAAAATGAGCAAAGATCAAATTTAATGAATAATATCCTTCGAATAATTTCTGATTTACAGCAGTCTTGTGA  740
            ||||||||||||||||||||||||.|.|||||.||.||.||||||||||||||||||||.||||||||.|||||
Sbjct  247  CTAGAAAATGAGCAAAGATCAAATCTGATGAACAACATTCTTCGAATAATTTCTGATTTGCAGCAGTCCTGTGA  320

Query  741  ATATGATATTCCCATGTTGCCTCATGTCCAAAAATATCTCAACTCTGTTCAGTATATAGAAGAACTACAAAAAT  814
            |||||||||||||||.||||||||||||||||||||.||.||||||||||||||||||||||||||||||||.|
Sbjct  321  ATATGATATTCCCATATTGCCTCATGTCCAAAAATACCTGAACTCTGTTCAGTATATAGAAGAACTACAAAAGT  394

Query  815  TTGTGGAAGACGATAATTACAAGCTTTCATTAAAGATAGAACCAGGGACAAGCACCCCACGTTCTGCTGCTTCC  888
            |||||||||||||||||||||||||.||.|||||||||||||||||..||||.||.|||||.||.|||||.|||
Sbjct  395  TTGTGGAAGACGATAATTACAAGCTCTCCTTAAAGATAGAACCAGGAGCAAGTACTCCACGCTCGGCTGCCTCC  468

Query  889  AGAGAAGATTTAGTAGGTCCTGAAGTAGGAGCGTCTCCACA--GAGTGGACGAAAA--AGT-------------  945
            ||.||.||..|||.|||||||||..||||.||.||.||.||  ||| |||.|||.|  |||             
Sbjct  469  AGGGAGGACCTAGCAGGTCCTGACATAGGCGCCTCACCCCAGGGAG-GGAGGAAGAGTAGTGCTGCTGCTGCTG  541

Query  946  -----GTGGCAGCTGAAGGAGCCTTGCTCCCACAGACACCGCCATCCCCTCGGAATCTGATTCCACATGGACAT  1014
                 |.|||.||.||.||||||||.||.||||||||.||.||.|||||||||||.||.||||||||.|||||.
Sbjct  542  CCGCCGCGGCTGCCGAGGGAGCCTTACTGCCACAGACGCCACCTTCCCCTCGGAACCTCATTCCACACGGACAC  615

Query 1015  AGGAAGTGCCATAGTTTGGGTTATAATTTCATTCATAAAATGAACACAGCAGAATTTAAGAGTGCAACGTTTCC  1088
            |||||||||||.||..|||||||.||||||||||||||.||||||||||||||.||||||||.||||||||.||
Sbjct  616  AGGAAGTGCCACAGCCTGGGTTACAATTTCATTCATAAGATGAACACAGCAGAGTTTAAGAGCGCAACGTTCCC  689

Query 1089  AAATGCAGGACCAAGACATCTGTTAGATGATAGCGTCATGGAGCCCCATGCGCCATCTCGAGGCCAAGCTGAAA  1162
            |||.|||||.|||.|.||.|||.|.||||||||.|||||||||||.||.||.||.||.||||||||.|||||.|
Sbjct  690  AAACGCAGGGCCACGGCACCTGCTGGATGATAGTGTCATGGAGCCGCACGCACCGTCGCGAGGCCAGGCTGAGA  763

Query 1163  GTTCTACTCTTTCTAGTGGAATATCAATAGGTAGCAGCGATGGTTCTGAACTAAGTGAAGAGACCTCATGGCCT  1236
            |.|||||.|||||.|||||||||||.|||||.|||||.|||||||||||||||||.|||||||||||||||||.
Sbjct  764  GCTCTACACTTTCCAGTGGAATATCCATAGGGAGCAGTGATGGTTCTGAACTAAGCGAAGAGACCTCATGGCCG  837

Query 1237  GCTTTTGAAAGGAACAGATTATACCATTCTCTCGGCCCGGTGACAAGAGTGGCACGAAATGGCTATCGAAGTCA  1310
            |||||||||                                                                 
Sbjct  838  GCTTTTGAA-----------------------------------------------------------------  846

Query 1311  CATGAAGGCCAGCAGTTCTGCAGAATCAGAAGATTTGGCAGTACATTTATATCCAGGAGCTGTTACTATTCAAG  1384
                         ||.|||||.||.||.|||||||||||.||.|||.|.||.||.|||||||||||||||||||
Sbjct  847  -------------AGCTCTGCGGAGTCGGAAGATTTGGCGGTGCATCTGTACCCCGGAGCTGTTACTATTCAAG  907

Query 1385  GTGTTCTCAGGAGAAAAACTTTGTTAAAAGAAGGCAAAAAGCCTACAGTAGCATCTTGGACAAAATATTGGGCA  1458
            ||||.|||.||||.|||||.|||.|||||||||||||.||.||.||||||||||||||||||||.|||||||||
Sbjct  908  GTGTGCTCCGGAGGAAAACCTTGCTAAAAGAAGGCAAGAAACCCACAGTAGCATCTTGGACAAAGTATTGGGCA  981

Query 1459  GCTTTGTGTGGGACACAGCTTTTTTACTATGCTGCCAAATCTCTAAAGGCTACCGAAAGAAAACATTTCAAATC  1532
            ||.||||||||.||||||||||||||||||||.|||||||||||.||||||||.||||||||.|||||||||||
Sbjct  982  GCCTTGTGTGGAACACAGCTTTTTTACTATGCCGCCAAATCTCTGAAGGCTACAGAAAGAAAGCATTTCAAATC  1055

Query 1533  AACATCCAATAAGAACGTATCTGTGATAGGATGGATGGTGATGATGGCTGATGACCCTGAACATCCTGATCTCT  1606
            |||.||.||||||||.||.||||||.|.||.||||||||||||||||||||.|||||.||.|||||.||.||||
Sbjct 1056  AACGTCAAATAAGAATGTGTCTGTGGTGGGCTGGATGGTGATGATGGCTGACGACCCAGAGCATCCAGACCTCT  1129

Query 1607  TCCTGCTGACTGACTCTGAGAAAGGAAATTCGTACAAGTTTCAAGCTGGCAATAGAATGAATGCAATGTTATGG  1680
            |.||||||||||||||.||||||||||||||.|||||||||||||||||||..||.||||||||||||.|.|||
Sbjct 1130  TTCTGCTGACTGACTCCGAGAAAGGAAATTCATACAAGTTTCAAGCTGGCAGCAGGATGAATGCAATGCTGTGG  1203

Query 1681  TTTAAGCATTTGAGTGCAGCCTGCCAAAGTAACAAACAACAGGTTCCTACAAACTTGATGACTTTTGAG  1749
            |||||.||.|||||.||.||||||||.||||||||.|||||||||||||||||||||||||||||||||
Sbjct 1204  TTTAAACACTTGAGCGCGGCCTGCCAGAGTAACAAGCAACAGGTTCCTACAAACTTGATGACTTTTGAG  1272

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