Nucleotide Global Alignment
Description
- Query:
- ccsbBroadEn_03543
- Subject:
- XR_374514.1
- Aligned Length:
- 2261
- Identities:
- 1132
- Gaps:
- 944
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TCGTGCGTCATCTCCACGCGCGTCTCACCGTGCGCGGAGCAGGTGGCGCGGATTAAGGACGTCAAAATCATTGA 74
Query 1 -------------------------------------------------------ATGTCTAGACTGGGAGCCC 19
||||||||||||||.||||
Sbjct 75 CAGAGTGAAAGCGCGGTGCCTGCTGCTGCCATGGTGGCTGGTGGCTGGGTACACTATGTCTAGACTGGGGGCCC 148
Query 20 TGGGTGGTGCCCGTGCCGGGCTGGGACTGTTGCTGGGTACCGCCGCCGGCCTTGGATTCCTGTGCCTCCTTTAC 93
||||.||..||||.||||||.||||||||||.||.|||||.||||||||||||||||||||||||.||||||||
Sbjct 149 TGGGCGGCTCCCGCGCCGGGTTGGGACTGTTACTTGGTACTGCCGCCGGCCTTGGATTCCTGTGCGTCCTTTAC 222
Query 94 AGCCAGCGATGGAAACGGACCCAGCGTCATGGCCGCAGCCAGAGCCTGCCCAACTCCCTGGACTATACGCAGAC 167
||||||||||||||||||||||||||.||||||||.||.||.||.|||||||||||||||||||||.|||||.|
Sbjct 223 AGCCAGCGATGGAAACGGACCCAGCGCCATGGCCGGAGTCACAGTCTGCCCAACTCCCTGGACTATGCGCAGGC 296
Query 168 TTCAGATCCCGGACGCCACGTGATGCTCCTGCGGGCTGTCCCAGGTGGGGCTGGAGATGCCTCAGTGCTGCCCA 241
||||||.|..||||||||.||||..|...|.||||||.|||||||||..|||||||||||..|..|.|||||||
Sbjct 297 TTCAGAGCGTGGACGCCAGGTGACACAGTTTCGGGCTATCCCAGGTGAAGCTGGAGATGCTGCCATACTGCCCA 370
Query 242 GCCTTCCACGGGAAGGACAGGAGAAGGTGCTGGACCGCCTGGACTTTGTGCTGACCAGCCTTGTGGCGCTGCGG 315
||||..|||.||||||.|||||||||||||||||||||||||||||||||||||||||.|||.|||||||||||
Sbjct 371 GCCTCTCACAGGAAGGGCAGGAGAAGGTGCTGGACCGCCTGGACTTTGTGCTGACCAGTCTTATGGCGCTGCGG 444
Query 316 CGGGAGGTGGAGGAGCT---GAGAAGCAGCCTGCGAGGGCTTGCGGGGGAGATTGTTGGGGAGGTCCGATGCCA 386
||.|||||||||||||| |||| |||||||.|||.||.||.|||||||||||||||||||||||.|..||
Sbjct 445 CGCGAGGTGGAGGAGCTTCAGAGA---AGCCTGCAAGGACTAGCTGGGGAGATTGTTGGGGAGGTCCGCTCTCA 515
Query 387 CATGGAAGAGAACCAGAGAGTGGCTCGGCGGCGAAGGTTTCCGTTTGTCCGGGAGAGGAGTGACTCCACTGGCT 460
.||.||||||||||||||||||||.||||||||.|||||.||.||||.|.|.|||||||||||||||||.||||
Sbjct 516 TATAGAAGAGAACCAGAGAGTGGCCCGGCGGCGCAGGTTCCCTTTTGCCAGAGAGAGGAGTGACTCCACGGGCT 589
Query 461 CCAGCTCTGTCTACTTCACGGCCTCCTCGGGAGC--CACGTTCACAGATGCTGAGAGTGAAGGGGGTTACACAA 532
|||||||||||||||||||.||||||||.||.|| ||| |||||||.||.|||||.||.||.|||||.||||
Sbjct 590 CCAGCTCTGTCTACTTCACCGCCTCCTCAGGGGCTGCAC--TCACAGACGCCGAGAGCGAGGGAGGTTATACAA 661
Query 533 CAGCCAATGCGGAGTCTGACAATGAGCGGGACTCTGACAAAGAAAGTGAGGACGGGGAAGATGAAGTGAGCTGT 606
|||||||.|||||||||||..|.|||||||||||.|||||.||.||||..||.|..||.||.|||||||||||.
Sbjct 662 CAGCCAACGCGGAGTCTGATTACGAGCGGGACTCCGACAAGGAGAGTGGAGATGCTGAGGACGAAGTGAGCTGC 735
Query 607 GAGACTGTGAAGATGGGGAGAAAGGATTCTCTTGACTTGGAGGAAGAGGCAGCTTCAGGTGCCTCCAGT----- 675
|||||.||||.|||||||||.|||||.|||||.|||.||||.|..||||| .||.||||||
Sbjct 736 GAGACCGTGAGGATGGGGAGGAAGGACTCTCTGGACCTGGATGTGGAGGC---------GGCGTCCAGTCCGGC 800
Query 676 -------GCCCTGGAGGCTGGA-GGTTCCTCAGGCTTGGAGGATGTGCTGCCCCTCCTGCAGCAGGCCGACGAG 741
|||.|||||| .||| |..|||||||||...||||||||||.||...||||||.|||||||||.|||
Sbjct 801 GGCGGCCGCCTTGGAGG-AGGATGACTCCTCAGGCCGAGAGGATGTGCAGCTGGTCCTGCTGCAGGCCGATGAG 873
Query 742 CTGCA-CAGGGGTG-ATGAGCAAGGCAAGCGGGAGGGCTTCCAGCTGCTGCTCAACAACAAGCTGGTGTATGGA 813
||||| |||||..| | ||||.|.|||||||||.|||||||||||||||||||||||.|||||||.|||||||
Sbjct 874 CTGCACCAGGGCAGCA--AGCAGGACAAGCGGGAAGGCTTCCAGCTGCTGCTCAACAATAAGCTGGCGTATGGA 945
Query 814 AGCCGGCAGGACTTTCTCTGGCGCCTGGCCCGAGCCTACAGTGACATGTGTGAGCTCACTGAGGAGGTGAGCGA 887
|||||.||.||||||||.||||||||||||||.||||||||||||||||..||.||.||||||||||.|||||.
Sbjct 946 AGCCGACAAGACTTTCTGTGGCGCCTGGCCCGGGCCTACAGTGACATGTCAGACCTTACTGAGGAGGAGAGCGG 1019
Query 888 GAAGAAGTCATATGCCCTAGATGGAAAAGAAGAAGCAGAGGCTGCTCTGGAGAAGGGGGATGAGAGTGCTGACT 961
|||||||||.|||||||||.|||||||||||||||||||||||||||||.||||.||.|||||||||||||..|
Sbjct 1020 GAAGAAGTCCTATGCCCTAAATGGAAAAGAAGAAGCAGAGGCTGCTCTGAAGAAAGGAGATGAGAGTGCTGCGT 1093
Query 962 GTCACCTGTGGTATGCGGTGCTTTGTGGTCAGCTGGCTGAGCATGAGAGCATCCAGAGGCGCATCCAGAGTGGC 1035
|.|||||||
Sbjct 1094 GCCACCTGT----------------------------------------------------------------- 1102
Query 1036 TTTAGCTTCAAGGAGCATGTGGACAAAGCCATTGCTCTCCAGCCAGAAAACCCCATGGCTCACTTTCTTCTTGG 1109
|||.|||||||||||||||||||..||.|||||||||.||||||.||.|||||||||||||||
Sbjct 1103 -----------GGAACATGTGGACAAAGCCATTGAACTTCAGCCAGAAGACCCCAGGGGTCACTTTCTTCTTGG 1165
Query 1110 CAGGTGGTGCTATCAGGTCTCTCACCTGAGCTGGCTAGAAAAAAAAACTGCTACAGCCTTGCTTGAAAGCCCTC 1183
||||||||||||.|||||.||||||.|||.||||.|.|||||||||||.|||||.||||||.||||||||||.|
Sbjct 1166 CAGGTGGTGCTACCAGGTTTCTCACTTGAACTGGTTGGAAAAAAAAACGGCTACCGCCTTGTTTGAAAGCCCCC 1239
Query 1184 TCAGTGCCACTGTGGAAGATGCCCTCCAGAGCTTCCTAAAGGCTGAAGAACTACAGCCAGGATTTTCCAAAGCA 1257
|.|||||.||||||.|.||.||.||.|||||.|||||.||||||||.||||||||||||||||||||.|||||.
Sbjct 1240 TTAGTGCTACTGTGCAGGACGCTCTGCAGAGTTTCCTTAAGGCTGAGGAACTACAGCCAGGATTTTCAAAAGCT 1313
Query 1258 GGAAGGGTATATATTTCCAAGTGCTACAGAGAACTAGGGAAAAACTCTGAAGCTAGATGGTGGATGAAGTTGGC 1331
|||.|||||||||||||.||||||||.||||||.||||.||||||||||||||||||..||||||||||.||||
Sbjct 1314 GGACGGGTATATATTTCTAAGTGCTATAGAGAATTAGGAAAAAACTCTGAAGCTAGAAAGTGGATGAAGCTGGC 1387
Query 1332 CCTGGAGCTGCCAGATGTCACGAAGGAGGATTTGGCTATCCAGAAGGACCTGGAAGAACTGGAAGTCATTTTAC 1405
.|.|||.||||||||.|||||.||.|||||||..|||.||||.||.||||||||||||||.|||||.||||||.
Sbjct 1388 TCAGGAACTGCCAGACGTCACTAATGAGGATTCAGCTTTCCAAAAAGACCTGGAAGAACTAGAAGTAATTTTAG 1461
Query 1406 GAGAC--------------------------------------------------------------------- 1410
||.|.
Sbjct 1462 GATAATAATCACACTTCAATGACGTGGGGGCTACTCCTTAAATGTGGAAAAGAAATCAAGTTGCTTTTTTCCTC 1535
Query 1411 -------------------------------------------------------------------------- 1410
Sbjct 1536 TGTGACTCCCCCATGGAGTTCAGGAAGCCAAGCAAGGTGTCCTGGCCCCTGGAGATCTGACTGCTAACACCACC 1609
Query 1411 -------------------------------------------------------------------------- 1410
Sbjct 1610 ATCCCTCAGCTTTTTATGTTATCAGTTAATTTATTCTAATCTCCTACCTTAATTTAAATTGGGGGAATTTAAAT 1683
Query 1411 -------------------------------------------------------------------------- 1410
Sbjct 1684 TACTTGCAGCTAAGGTTTCTGCTTTCTTCCTCTTAAGTGAATTCTTGAAAAATCAAGACAGTATAGCCATAGGG 1757
Query 1411 -------------------------------------------------------------------------- 1410
Sbjct 1758 TTTAGTGTGGACCCAGCCCAGAAGGCCAAGAGCTGAGAATGAAGTAGCAGAACTGTCTTCCAGCTGCCAGTGAG 1831
Query 1411 -------------------------------------------------------------------------- 1410
Sbjct 1832 GTGGATGGACTTCAGAGCCACACAACAGAGCATAGGACTTGTAATCTTTTTTGCTAATATTCAACATGTATTTA 1905
Query 1411 -------------------------------------------------------------------------- 1410
Sbjct 1906 TTGTCCTTTAATGTCACACCCTACCTACGAGGACAAAAGGAGCCAGCACAGCCCAGGTACTGCCCTCCTACCAC 1979
Query 1411 -------------------------------------------------------------------------- 1410
Sbjct 1980 CCATCATGTATATAATACGCTCCCTGTATTCCTGGGTGAGGGCTGGACCATGGACTGGAGACCTGGCAGCTTTT 2053
Query 1411 -------------------------------------------------------------------------- 1410
Sbjct 2054 GGGATGACAACGCTGGCAAAGGGTCTATGAATCTATTTTGAAAGTGACTTATCTGGAGAGGTGCCTGGAGTATT 2127
Query 1411 ----------------------------------------- 1410
Sbjct 2128 TTTGGTACAAATCTGAAATAAACTAAAGTTGATTACAAGGA 2168
